cluster # 7701

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Oryza sativa
cluster # 7701 cluster # 7701 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7701#0 length = 710 sequences # 1

consensus_7701#1 length = 675 sequences # 3
consensus_7701#2 length = 393 sequences # 1

consensusID : consensus_7701#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 710
fasta sequence

                              [TCTTTTTAAGAATGTAGCAGCAACTTTGTTAATCAAATTAATCCTTACTACTTTCAAAATTACCCTTCAAATTATCCCCCAGTATAAAAAAATGTAAAATAATAGCAGAGCCTTTCCAGCCATCAGTGTGAACGGCACCGGTTGCGATGGCAATGTACAAATGGGTACAGAAGGAAGCGAAACTGGCACTCGTCTCCATCTTGGCGTGCGTCAGGAGCCTCCAAGCGAAGCCTGAAACAATGGCCGACGCCGCCAAGATGAGGAACCACTCGGTGAAGCTGCAGACCGAACCGCTGCTTATGGCTGGTATCGACACGGCCAGGAAGGCAGGAACCCGGTGAACGTGACCTTGGTCCGCTCAACGACGCCGGCTCTGCACCCTCTCCTCCTCCACCTCCGCCGCCGTCCGCCGCGGCGACATCGAATGCGTGCACCAGCAATATGAGGACGAGCGGAGACAGCAACGACAGCAGCGCCCGCAATTTCACGAGCGCGAACATGATCGACGACATGACCGCGGCGATGGCGAGAGCCATGGACACGTCGCATATCCCGGTGAGATTTCCCACGACGCTGGCGCGGCCGCCCGTGTCGGTCCTGCTCTCGGTGCGGGAGGCGGGATCGTCTCGACGGGCATGAAGCAGACGCCGAACAAGCAAGCGAAGAAGCATATGACCATGGGCGCGGCGCGACAACGCTGGTCGCCGTTG]

[+] EMBL CB619086             [TCTTTTTAAGAATGTAGCAGCAACTTTGTTAATCAAATTAATCCTTACTACTTTCAAAATTACCCTTCAAATTATCCCCCAGTATAAAAAAATGTAAAATAATAGCAGAGCCTTTCCAGCCATCAGTGTGAACGGCACCGGTTGCGATGGCAATGTACAAATGGGTACAGAAGGAAGCGAAACTGGCACTCGTCTCCATCTTGGCGTGCGTCAGGAGCCTCCAAGCGAAGCCTGAAACAATGGCCGACGCCGCCAAGATGAGGAACCACTCGGTGAAGCTGCAGACCGAACCGCTGCTTATGGCTGGTATCGACACGGCCAGGAAGGCAGGAACCCGGTGAACGTGACCTTGGTCCGCTCAACGACGCCGGCTCTGCACCCTCTCCTCCTCCACCTCCGCCGCCGTCCGCCGCGGCGACATCGAATGCGTGCACCAGCAATATGAGGACGAGCGGAGACAGCAACGACAGCAGCGCCCGCAATTTCACGAGCGCGAACATGATCGACGACATGACCGCGGCGATGGCGAGAGCCATGGACACGTCGCATATCCCGGTGAGATTTCCCACGACGCTGGCGCGGCCGCCCGTGTCGGTCCTGCTCTCGGTGCGGGAGGCGGGATCGTCTCGACGGGCATGAAGCAGACGCCGAACAAGCAAGCGAAGAAGCATATGACCATGGGCGCGGCGCGACAACGCTGGTCGCCGTTG]




>consensus_7701#0
TCTTTTTAAGAATGTAGCAGCAACTTTGTTAATCAAATTAATCCTTACTACTTTCAAAAT
TACCCTTCAAATTATCCCCCAGTATAAAAAAATGTAAAATAATAGCAGAGCCTTTCCAGC
CATCAGTGTGAACGGCACCGGTTGCGATGGCAATGTACAAATGGGTACAGAAGGAAGCGA
AACTGGCACTCGTCTCCATCTTGGCGTGCGTCAGGAGCCTCCAAGCGAAGCCTGAAACAA
TGGCCGACGCCGCCAAGATGAGGAACCACTCGGTGAAGCTGCAGACCGAACCGCTGCTTA
TGGCTGGTATCGACACGGCCAGGAAGGCAGGAACCCGGTGAACGTGACCTTGGTCCGCTC
AACGACGCCGGCTCTGCACCCTCTCCTCCTCCACCTCCGCCGCCGTCCGCCGCGGCGACA
TCGAATGCGTGCACCAGCAATATGAGGACGAGCGGAGACAGCAACGACAGCAGCGCCCGC
AATTTCACGAGCGCGAACATGATCGACGACATGACCGCGGCGATGGCGAGAGCCATGGAC
ACGTCGCATATCCCGGTGAGATTTCCCACGACGCTGGCGCGGCCGCCCGTGTCGGTCCTG
CTCTCGGTGCGGGAGGCGGGATCGTCTCGACGGGCATGAAGCAGACGCCGAACAAGCAAG
CGAAGAAGCATATGACCATGGGCGCGGCGCGACAACGCTGGTCGCCGTTG

consensusID : consensus_7701#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 675
fasta sequence

                              [TTTTTTTTTTTTTTTTTGGACGGAAAGGGAATTGCAAATTTTACACTAAACCGCATAGCAGGTTATAATTATATCAGCTCTG-TTTTGCTTGTCAAAGTGATGCTCCAAGTTATCCCCCTTGTACCAAAAAAATAAAAATAAAAATCAGTGCAGAGCCTTTACGGCCATATCTGTGAATGGCACCGTTGCAATGGCAATGCAGAAATGTGTGCAGAAGGAAGCGAAATTGGCCGTCGTCCCCATCT-TGGCGTGCGTCAGGAGCCTCCAAGCGAAGCCTGAAACAATGGCGGATGCCGCAAAGATGAGGAACCAATCGGTGGAGCTGCAGAGTGAGCCAGTCCTGACAGCTGGTATCGACACGGCCAGAAACCCGGTGAACGTGACCTTGGTCAGCTCCATCGACGCCGGCTTTTCATCCTCTCCACCACCGACACCGCCACCGCCACCGCCACC-GGCGCTGATAACGACATCGTATGCACGCACCAGCAAGATGAGGAAGAGCGGTAACACCAACAGGAGCGCCCGCAGCTCCACGATCGCGTGCATGACGGACCACATGACCGCCNAGACAGCGAGAGCCATGACNATNTCAAATATCACGGTAAGGTTGGACACGATNACNACNTGGACGCCTACNTCGTTGCCATGGGCTTCTTCATCTGGGAGGGGCGGGAT]

[+] EMBL CA760306             [TTTTTTTTTTTTTTTTTGGACGGAAAGGGAATTGCAAATTTTACACTAAACCGCATAGCAGGTTATAATTATATCAGCTCTGCTTTTGCCTGTCAAAGGGATGCTCCAAGTTATCCCCCTTGTACCAAAAAAATAAAAATAAAAATCAGTGCAAAGCCTTTACGGCCATATCTGTGAATGGCACCGTTGCAATGGCAATGCAAAAATGTGTGCAGAAGGAAGCGAAATTGGCCGTCGTCCCCATCT TGGCGTGCGTCAGGAGCCTCCAAGCGAAGCCTGAAACAATGGCGGATGCCGCAAAGATGAGGAACCAATCGGTGGAGCTGCAAAGTGAGCCAGTCCTGACAGCTGGTATCGACACGGCCAGAAACCCGGTGAACGTGACCTTGGTCAGCTCCATCGACGCCGGCTTTTCATCCTCTCCACCACCGACACCGCCACCGCCACCGCCACC GGCGCTGATAACGACTTCGTATGCACGCACCAGCAAGATGAGGAAGAGCGGTAACACCAACAGGAGCGCCCGCAGCTCCACGATCGCGTGCATGACGGACCACATGACCGCCNAGACAGCGAGAGCCATGACNATNTCAAATATCACGGTAAGGTTGGACACGATNACNACNTGGACGCCTACNTCGTTGCCATGGGCTTCTTCATCTGGGAGGGGCGGGAT]
[-] EMBL BI811859             [                   tttttttttGAA TGCAAATTTTACACTAAACCGCATAGCAGGTTATAATTATATCAGCTCTG CTTTGCTTGTCAAAGTGATGCTCCAAGTTATCCCCCTTGTACCAAAAAAATAAAAATAAAAATCAGTGCAGAGCCTTTACGGCCATATCTGTGAATGGCACCGTTGCAATGGCAATGCAGAAATGTGTGCAGAAGGAAGCGAAATTGGCCGTCGTCCCCATCT TGGCGTGCGTCAGGAGCCTCCAAGCGAAGCCTGAAACAATGGCGGATGCCGCAAAGATGAGGAACCAATCGGTGGAGCTGCAGAGTGAGCCAGTCCTGACAGCTGGTATCGACACGG CAGAAACCCGGTGAACGTGACCTTGGTCAGCTCCATCGACGCCGGCTTTTCATCCTCTCCA CACCGA ACCG CA CGGCACCG CACCGGGCGCTGATAACGACATCGTATGCACGCACCAGCAAGATGAGGAAGAG                                                                                                                                                                              ]
[-] EMBL BQ909016             [                                                                            tttttt TTTTGCTTGTCAAAGTGATGCTCCAAGTTATCCCCCTTGTACCAAAAAAATAAAAATAAAAATCAGTGCAGAGCCTTTACGGCCATATCTGTGAATGGCACCGTTGCAATGGCAATGCAGAAATGTGTGCAGAAGGAAGCGAAATTGGCCGTCGTCCCCATCTGTGGCGTGCGTCAGGAGCCTCCAAGCGAAGCCTGAAACAATGGCGGATGCCGCAAAGATGAGGAACCAATCGGTGGAGCTGCAGAGTGAGCCAGTCCTGACAGCTGGTATCGACACGGCCAGAAACCCGGTGAACGTGACCTTGGTCAGCTCCATCGACGCCGGCTTTTCATCCTCTCCACCACCGACACCGCCACCGCCACCGCCACC GGCGCTGATAACGACATCGTATGCACGCACCAGCAAGATGAGGAAGAGCGGTAACACCAACAGGAGCGCCCGCAGCTCCACGATCGCGTGCATGACGGACCACATGACCGCCGAGACAGCGAGAGCCATGACGATGTCCAATATCACGGAAAGGT                                                                   ]




>consensus_7701#1
TTTTTTTTTTTTTTTTTGGACGGAAAGGGAATTGCAAATTTTACACTAAACCGCATAGCA
GGTTATAATTATATCAGCTCTGTTTTGCTTGTCAAAGTGATGCTCCAAGTTATCCCCCTT
GTACCAAAAAAATAAAAATAAAAATCAGTGCAGAGCCTTTACGGCCATATCTGTGAATGG
CACCGTTGCAATGGCAATGCAGAAATGTGTGCAGAAGGAAGCGAAATTGGCCGTCGTCCC
CATCTTGGCGTGCGTCAGGAGCCTCCAAGCGAAGCCTGAAACAATGGCGGATGCCGCAAA
GATGAGGAACCAATCGGTGGAGCTGCAGAGTGAGCCAGTCCTGACAGCTGGTATCGACAC
GGCCAGAAACCCGGTGAACGTGACCTTGGTCAGCTCCATCGACGCCGGCTTTTCATCCTC
TCCACCACCGACACCGCCACCGCCACCGCCACCGGCGCTGATAACGACATCGTATGCACG
CACCAGCAAGATGAGGAAGAGCGGTAACACCAACAGGAGCGCCCGCAGCTCCACGATCGC
GTGCATGACGGACCACATGACCGCCNAGACAGCGAGAGCCATGACNATNTCAAATATCAC
GGTAAGGTTGGACACGATNACNACNTGGACGCCTACNTCGTTGCCATGGGCTTCTTCATC
TGGGAGGGGCGGGAT

consensusID : consensus_7701#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 393
fasta sequence

                              [TCCTGTCACTGAAGAGAACATTTTTCTGGACCAAACATCCAAACCCAACTAAAGGGTTATTAATTTTTGCCTGTCAAAATAACCCTCCAAATTACCCTGTAGTACAAACAAATAATCAGTGCAGAGCTTGTCCGGCCATAACTGTAAATGGCACCGTTGCAAGCACGATGCACAAATGCGTGCAGAAGGAAGCTACATTGGCACTTTTCCCAACTTTGGCCTGCGTCAGGAGCCTCCAAGCGAAGCCCGAAACAATGGCCGACGCTGCAAAGATGAGGAACCACTGGGTGGACGTGCTGAGCGGGCCACGGCTGGTCGTCCTGGCAGATATCGCCACGGTCAGGAACCCGGTGAACGCGACCTTGCTCAGCTCCAGCGACGCCGGCTTCACGA]

[+] EMBL CB676952             [TCCTGTCACTGAAGAGAACATTTTTCTGGACCAAACATCCAAACCCAACTAAAGGGTTATTAATTTTTGCCTGTCAAAATAACCCTCCAAATTACCCTGTAGTACAAACAAATAATCAGTGCAGAGCTTGTCCGGCCATAACTGTAAATGGCACCGTTGCAAGCACGATGCACAAATGCGTGCAGAAGGAAGCTACATTGGCACTTTTCCCAACTTTGGCCTGCGTCAGGAGCCTCCAAGCGAAGCCCGAAACAATGGCCGACGCTGCAAAGATGAGGAACCACTGGGTGGACGTGCTGAGCGGGCCACGGCTGGTCGTCCTGGCAGATATCGCCACGGTCAGGAACCCGGTGAACGCGACCTTGCTCAGCTCCAGCGACGCCGGCTTCACGA]




>consensus_7701#2
TCCTGTCACTGAAGAGAACATTTTTCTGGACCAAACATCCAAACCCAACTAAAGGGTTAT
TAATTTTTGCCTGTCAAAATAACCCTCCAAATTACCCTGTAGTACAAACAAATAATCAGT
GCAGAGCTTGTCCGGCCATAACTGTAAATGGCACCGTTGCAAGCACGATGCACAAATGCG
TGCAGAAGGAAGCTACATTGGCACTTTTCCCAACTTTGGCCTGCGTCAGGAGCCTCCAAG
CGAAGCCCGAAACAATGGCCGACGCTGCAAAGATGAGGAACCACTGGGTGGACGTGCTGA
GCGGGCCACGGCTGGTCGTCCTGGCAGATATCGCCACGGTCAGGAACCCGGTGAACGCGA
CCTTGCTCAGCTCCAGCGACGCCGGCTTCACGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7701#1      TTTTTTTTTTTTTTTTTGGACGGAAAGGGAATTGCAAATTTTACACTAAAC-CGCATAGC 59
consensus_7701#2      -----------TCCTGTCACTGAAGAGAACATTT----TTCTGGACCAAACATCCAAACC 45
consensus_7701#0      -------------------------------------TCTTTTTAAGAATGTAGCAGCAA 23
                                                             * *  *  **     **    

consensus_7701#1      AGGTTATAATTATATCAGCTCTGTTTTGCTTGTCAAAGTGATGCTCCAAGTTATCCCCCT 119
consensus_7701#2      CAACTAAAGGGTTATTAATT----TTTGCCTGTCAAAATAACCCTCCAAATTACCC---- 97
consensus_7701#0      CTTTGTTAATCAAATTAATCCT-TACTACTT-TCAAAATTACCCTTCAAATTATCC---- 77
                             *     ** *         * * * ***** * *  ** *** *** **    

consensus_7701#1      TGTACCAAAAAAATAAAAATAAAAATCAGTGCAGAGCCTTTACGGCCATATCTGTGAATG 179
consensus_7701#2      TGTAGTACAAACA-------AATAATCAGTGCAGAGCTTGTCCGGCCATAACTGTAAATG 150
consensus_7701#0      CCCAGTATAAAAA---AATGTAAAATAATAGCAGAGCCTTTCCAGCCATCAGTGTGAACG 134
                         *  * *** *        * *** *  ******* * * * *****   *** ** *

consensus_7701#1      GCACCG-TTGCAATGGCAATGCAGAAATGTGTGCAGAAGGAAGCGAAATTGGCCGTCGTC 238
consensus_7701#2      GCACCG-TTGCAAGCACGATGCACAAATGCGTGCAGAAGGAAGCTACATTGGCACTTTTC 209
consensus_7701#0      GCACCGGTTGCGATGGCAATGTACAAATGGGTACAGAAGGAAGCGAAACTGGCACTCGTC 194
                      ****** **** *   * *** * ***** ** *********** * * ****  *  **

consensus_7701#1      CCCATCTTGGCGTGCGTCAGGAGCCTCCAAGCGAAGCCTGAAACAATGGCGGATGCCGCA 298
consensus_7701#2      CCAACTTTGGCCTGCGTCAGGAGCCTCCAAGCGAAGCCCGAAACAATGGCCGACGCTGCA 269
consensus_7701#0      TCCATCTTGGCGTGCGTCAGGAGCCTCCAAGCGAAGCCTGAAACAATGGCCGACGCCGCC 254
                       * *  ***** ************************** *********** ** ** ** 

consensus_7701#1      AAGATGAGGAACCAATCGGTGGAGCTGCAGAGTGAGCCA------GTCCTGACAGCTGGT 352
consensus_7701#2      AAGATGAGGAACCACTGGGTGGACGTGCTGAGCGGGCCACGGCTGGTCGTCCTGGCAGAT 329
consensus_7701#0      AAGATGAGGAACCACTCGGTGAAGCTGCAGACCGAACCGC------TGCTTATGGCTGGT 308
                      ************** * **** *  *** **  *  **        *  *    ** * *

consensus_7701#1      ATCGACACGGCCAGAAA--------CCCGGTGAACGTGACCTTGGTCAGCTCCATCGACG 404
consensus_7701#2      ATCGCCACGGTCAGGAA--------CCCGGTGAACGCGACCTTGCTCAGCTCCAGCGACG 381
consensus_7701#0      ATCGACACGGCCAGGAAGGCAGGAACCCGGTGAACGTGACCTTGGTCCGCTC-AACGACG 367
                      **** ***** *** **        *********** ******* ** **** * *****

consensus_7701#1      CCGGCTTTTCATCCTCTCCACCACCGACACCGCCACCGCCACCGCCACCGGCGCTGATAA 464
consensus_7701#2      CCGGCTTCACGA------------------------------------------------ 393
consensus_7701#0      CCGGCTCTGCACCCTCTCCTCCTCCACCTCCGCCGCCGTC--CGCCGC----------GG 415
                      ******   *                                                  

consensus_7701#1      CGACATCGTATGCACGCACCAGCAAGATGAGGAAGAGCGGTAACACCAAC---AGGAGCG 521
consensus_7701#2      ------------------------------------------------------------
consensus_7701#0      CGACATCGAATGCGTGCACCAGCAATATGAGGACGAGCGGAGACAGCAACGACAGCAGCG 475
                                                                                  

consensus_7701#1      CCCGCAGCTCCACGATCGCGTGCATGACGGACCACATGACCGCCNAGACAGCGAGAGCCA 581
consensus_7701#2      ------------------------------------------------------------
consensus_7701#0      CCCGCAATTTCACGAGCGCGAACATGATCGACGACATGACCGCGGCGATGGCGAGAGCCA 535
                                                                                  

consensus_7701#1      TGACNATNTCAAATATCACGGTAAGGTTGGACACGATNACNACNTGGACGCCTACNTCGT 641
consensus_7701#2      ------------------------------------------------------------
consensus_7701#0      TGGACACGTCGCATATCCCGGTGAGATTTCCCACGACGCTGGCGCGGCCGCCCGTGTCG- 594
                                                                                  

consensus_7701#1      TGCCATGGGCTTCTTCATCTGGGAGGGGCGGGAT-------------------------- 675
consensus_7701#2      ------------------------------------------------------------
consensus_7701#0      -GTCCTGCTCTCGGTGCGGGAGGCGGGATCGTCTCGACGGGCATGAAGCAGACGCCGAAC 653
                                                                                  

consensus_7701#1      ---------------------------------------------------------
consensus_7701#2      ---------------------------------------------------------
consensus_7701#0      AAGCAAGCGAAGAAGCATATGACCATGGGCGCGGCGCGACAACGCTGGTCGCCGTTG 710