These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7702#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1297 fasta sequence [CGGCCCAGCCCAACCAGGTCGCACAACGCAACTCGCGAGGGCGAGCGACTGAGACCGTCTCCTCTCGTCTCGTCTCCCCGCTAGGGTTCAGGCCATGGCGCACGGCCGCGCCGCCGCCGTACGCCGCCCCAAGTCGTCGTCGGCGTCGTCCGCGGGGGCGGCTGCCGAACGGAAGCGGAAGCGCGCCGCCGCCGCCAAGACCGTTTCCCTCAAGAACCAGATCCGCTCCACCGAGCGCCTGCTCCGCAAGGACCTTCCTAATGACATTAGGGTAGCTCAAGAGAAGAAACTGGAAGAATTGAAGCGGCAACAAGAGCTTCAGAATCAACTGGCTATTCAACGAACAGTTCAGCTGAGAGATAGAAAGATAAAATTCTTTGAGAGGCGAAAGATTGAGAGGATGATCAGGCGCCTTGAGAAGCAGCAACGTTCAAATGCCGATGATGCCAGCAATAAACTGTCAAAATTAAAGGAAGATCTTGAGTATGTTAGGTTTTTCCCAAAGAATGAGAAATATGTCTCACTGTTTTCTGGAGGGAATACCCCAGATATGTTAGAGAAGAGGAATAAGTGGCGTAAACAGATAAAAGAAAATTTGATGGCTGCTGCAGAAAATGGAAAAGACTTGGAAGAGACAGCAAGCGATGATGATACTGTGGATGTGAGTGATGACGACTTCTTCATGTCGGGGAGTTCAAGTGATGAAGAGGCTGATGATGAATGGACTGACAAAAGTGCCAAAGAACCAGCTTCCAGTGCTTCAGGTAAGGCAGCGTCTGGCATGTCAAGCGATGAAAAGAATCA-GCGTC-AGAGAGATGCTCGAGTTCTTATGCCACCACCTCGTTCATTAGCACCAAATAGAACTAGACCAGGGGTGAAACACGTGTTATCCA-GCTCAAGCAATACTTCAAATAGCACAAGTGGTGGCACTTTCAAAAATAGGAGAGCAGCAAATCAGCCTGGAGATCATAACAGCAACCTGAGTTCAAATTCTGATGCTCATAAACCACGTCGCAAAAGGAGACATCGGAAGAAAAAGAAGCTGGCATGAATATTCTGGAGCGTGAGGTGGAAGCTGATTTTATTCCCGCACCAAAGTGTGTACTAAGGCTGGTTACTATCAAAAGAATGGAGACAACATGTGTGCCCTGAGGAAGTTGCTGATTTTGTGCGCCCTCTCTCGATGTAAAATGAATCTCCTATCGCTCTTCACTCAATCACTCATTTGTTTTACAGTAACCATCCAAAAAGTTCCGATTATTAACTGAATGCATGCTGGTCTTTACCAAAAAAAAAA] [+] EMBL AK061648 [CGGCCCAGCCCAACCAGGTCGCACAACGCAACTCGCGAGGGCGAGCGACTGAGACCGTCTCCTCTCGTCTCGTCTCCCCGCTAGGGTTCAGGCCATGGCGCACGGCCGCGCCGCCGCCGTACGCCGCCCCAAGTCGTCGTCGGCGTCGTCCGCGGGGGCGGCTGCCGAACGGAAGCGGAAGCGCGCCGCCGCCGCCAAGACCGTTTCCCTCAAGAACCAGATCCGCTCCACCGAGCGCCTGCTCCGCAAGGACCTTCCTAATGACATTAGGGTAGCTCAAGAGAAGAAACTGGAAGAATTGAAGCGGCAACAAGAGCTTCAGAATCAACTGGCTATTCAACGAACAGTTCAGCTGAGAGATAGAAAGATAAAATTCTTTGAGAGGCGAAAGATTGAGAGGATGATCAGGCGCCTTGAGAAGCAGCAACGTTCAAATGCCGATGATGCCAGCAATAAACTGTCAAAATTAAAGGAAGATCTTGAGTATGTTAGGTTTTTCCCAAAGAATGAGAAATATGTCTCACTGTTTTCTGGAGGGAATACCCCAGATATGTTAGAGAAGAGGAATAAGTGGCGTAAACAGATAAAAGAAAATTTGATGGCTGCTGCAGAAAATGGAAAAGACTTGGAAGAGACAGCAAGCGATGATGATACTGTGGATGTGAGTGATGACGACTTCTTCATGTCGGGGAGTTCAAGTGATGAAGAGGCTGATGATGAATGGACTGACAAAAGTGCCAAAGAACCAGCTTCCAGTGCTTCAGGTAAGGCAGCGTCTGGCATGTCAAGCGATGAAAAGAATCA GCGTC AGAGAGATGCTCGAGTTCTTATGCCACCACCTCGTTCATTAGCACCAAATAGAACTAGACCAGGGGTGAAACACGTGTTATCCA GCTCAAGCAATACTTCAAATAGCACAAGTGGTGGCACTTTCAAAAATAGGAGAGCAGCAAATCAGCCTGGAGATCATAACAGCAACCTGAGTTCAAATTCTGATGCTCATAAACCACGTCGCAAAAGGAGACATCGGAAGAAAAAGAAGCTGGCATGAATATTCTGGAGCGTGAGGTGGAAGCTGATTTTATTCCCGCACCAAAGTGTGTACTAAGGCTGGTTACTATCAAAAGAATGGAGACAACATGTGTGCCCTGAGGAAGTTGCTGATTTTGTGCGCCCTCTCTCGATGTAAAATGAATCTCCTATCGCTCTTCACTCAATCACTCATTTGTTTTACAGTAACCATCCAAAAAGTTCCGATTATTAACTGAATGCAT ] [+] EMBL AK098876 [ TCGTCTCGTCTCCCCGCTAGGGTTCAGGCCATGGCGCACGGCCGCGCCGCCGCCGTACGCCGCCCCAAGTCGTCGTCGGCGTCGTCCGCGGGGGCGGCTGCCGAACGGAAGCGGAAGCGCGCCGCCGCCGCCAAGACCGTTTCCCTCAAGAACCAGATCCGCTCCACCGAGCGCCTGCTCCGCAAGGACCTTCCTAATGACATTAGGGTAGCTCAAGAGAAGAAACTGGAAGAATTGAAGCGGCAACAAGAGCTTCAGAATCAACTGGCTATTCAACGAACAGTTCAGCTGAGAGATAGAAAGATAAAATTCTTTGAGAGGCGAAAGATTGAGAGGATGATCAGGCGCCTTGAGAAGCAGCAACGTTCAAATGCCGATGATGCCAGCAATAAACTGTCAAAATTAAAGGAAGATCTTGAGTATGTTAGGTTTTTCCCAAAGAATGAGAAATATGTCTCACTGTTTTCTGGAGGGAATACCCCAGATATGTTAGAGAAGAGGAATAAGTGGCGTAAACAGATAAAAGAAAATTTGATGGCTGCTGCAGAAAATGGAAAAGACTTGGAAGAGACAGCAAGCGATGATGATACTGTGGATGTGAGTGATGACGACTTCTTCATGTCGGGGAGTTCAAGTGATGAAGAGGCTGATGATGAATGGACTGACAAAAGTGCCAAAGAACCAGCTTCCAGTGCTTCAGGTAAGGCAGCGTCTGGCATGTCAAGCGATGAAAAGAATCA GCGTC AGAGAGATGCTCGAGTTCTTATGCCACCACCTCGTTCATTAGCACCAAATAGAACTAGACCAGGGGTGAAACACGTGTTATCCA GCTCAAGCAATACTTCAAATAGCACAAGTGGTGGCACTTTCAAAAATAGGAGAGCAGCAAATCAGCCTGGAGATCATAACAGCAACCTGAGTTCAAATTCTGATGCTCATAAACCACGTCGCAAAAGGAGACATCGGAAGAAAAAGAAGCTGGCATGAATATTCTGGAGCGTGAGGTGGAAGCTGATTTTATTCCCGCACCAAAGTGTGTACTAAGGCTGGTTACTATCAAAAGAATGGAGACAACATGTGTGCCCTGAGGAAGTTGCTGATTTTGTGCGCCCTCTCTCGATGTAAAATGAATCTCCTATCGCTCTTCACTCAATCACTCATTTGTTTTACAGTAACCATCCAAAAAGTTCCG ] [-] EMBL CF326317 [ ACGACTTCTTCATGTCGGGGAGTTCAAGTGATGAAGAGGCTGATGATGAATGGACTGACAAAAGTGCCAAAGAACCAGCTTCCAGTGCTTCAGGTAAGGCAGCGTCTGGCATGTCAAGCGATGAAAAGAATCA GCGTC AGAGAGATGCTCGAGTTCTTATGCCACCACCTCGTTCATTAGCACCAAATAGAACTAGACCAGGGGTGAAACACGTGTTATCCA GCTCAAGCAATACTTCAAATAGCACAAGTGGTGGCACTTTCAAAAATAGGAGAGCAGCAAATCAGCCTGGAGATCATAACAGCAACCTGAGTTCAAATTCTGATGCTCATAAACCACGTCGCAAAAGGAGACATCGGAAGAAAAAGAAGCTGGCATGAATATTCTGGAGCGTGAGGTGGAAGCTGATTTTATTCCCGCACCAAAGTGTGTACTAAGGCTGGTTACTATCAAAAGAATGGAGACAACATGTGTGCCCTGAGGAAGTTGCTGATTTTGTGCGCCCTCTCTCGATGTAAAATGAATCTCCTATCGCTCTTCACTCAATCACTCATTTGTTTTACAGTAACCATCCAAAAAGTTCCGATTATTAACTGAATGCAT ] [+] EMBL BI796731 [ gccaATGTCAAGCGATGAAAAGAATCACGCGTCAAGAGAGATGCTCGAGTTCTTATGCCACCACCTCGTTCATTAGCACC AATAGAACTAGACCAGGGGTGAAACACGTGTTATCCAGGCTCAAGC ATACTTCAAATAGCACAAGTGGTGGCACTTTCAAAAATAGGAGAGCAGCAAATCAGCCTGGAGATCATAACAGCAACCTGAGTTCAAATTCTGATGCTCATAAACCACGTCGC AAAGGAGACATCGGAAGAAAAAGAAGCTGGCATGAATATTCTGGAGCGTGAGGTGGAAGCTGATTTTATTCCCGCACCCAAGTGTGTACTAAGGCTGGTTACTATCCAAAGAATGGAGACAACATGTGTGCCCTGAGGAAGTTGCTGATTTTGTGCGCCCTCTCTCGATGTAAAATGAATCTCCTATCGCTCTTCACTCAATCACTCATTTGTTTTACAGGAACCATCC AAAAGTTCCGATTATTAACTGAATGCATGCTGGTCTTTACCAAAAAAAAAA] [+] EMBL D43493 [ GGTGAAACACGTNTNATCCA GCTCAAGCAATACTTCAAATAGCACAAGTGGTGGCACTTTCAAAAATAGGAGAGCAGCAAATCAGCCTGGNGAT ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||