cluster # 7704

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Oryza sativa
cluster # 7704 cluster # 7704 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7704#0 length = 850 sequences # 4

consensus_7704#1 length = 583 sequences # 1

consensusID : consensus_7704#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 850
fasta sequence

                              [AAAANCTACTATACCAAAACTGGAAAATATATGTAAAGTTCCTCCTTTTCTTTTTTTCCCTTTCATTTAGGTGTCATGCTATGTACAAATTTCACGGGAGCAAAAAACCTAAAAGTTACATCCACTTGTTGAAAGAAAGAAAAAACAAGGGTAATAAGAAAACGCATACCAAAGGAC-AAAAAAAAACCAAAATAATACTATAGCATCTATTTATGGTACACAGGTAAAATATTTGAAAGAGTAAAAAAGGAACTAAAAAGTCTTCTTTGCCTCTCAGCATTCGCAGGAAACTAACACAGCACTGTACAATTTTCTTTGCGCATACCGAAGGTCTGTTTCTGTGTTCTCTGTAAGAAGCCCACACTGATTTCTACAAGTCTCCATAAAAAAACGGAGAATATAAATTACGCTGCAGCTTCTCTCTGCTAAAAACTTCACCAGCAATCCAGTTTAGCTGAAAAACCTAATTCTGATACTATCCATTTTACATGTCTAGTCTGAGACCATGTCCTCCAATTCATGCATGTCTGAATCAGTCTCATTTGAAGAATCCCTTCCCAAGGGTGTATTCTCGCCGTAGTCCAGATCTCTCCAGTCAAACTCACCATCATTAGCACGTTTCTCCATTGCTTCCCCAATCCGATTACTTGGATGAGGCTTACTATGCCCACTTCTTCCCTTTGTCTTTGCGCAAATACAGTCCATAGGGTGCTCATGGAATTCACCTCTTCCAGGTTTTATCTCATTGGGCTCCCCCATAAATCCCTTCTGAAGTGTCTGAACTTTGGACGAAAATGTTTCCCAACTCATGCTGGGTCGATTGAGAAAGAGTGAGTAAAGCTTCTTGGCA]

[-] EMBL CA763943             [AAAANCTACTATACCAAAACTGGAAAATATATGTAAAGTTCCTCCTTTTCTTTTTTTCCCTTTCATTTAGGTGTCATGCTATGTACAAATTTCACGGAAGCAAAAAACCTAAAAGTTACATCCACTTGTTGAAAGAAAGAAAAAACAAGGGTAATAAGAAAACGCATACCAAAGGACAAAAAAAAAACCAAAATAATACTATAGCATCTATTTATGGTACACAGGTAAAATATTTGAAAGAGTAAAAAAGGAACTAAAAAGTCTTCTTTGCCTCTCAGCATTCGCAGGAAACTAACACAGCACTGTACAATTTTCTTTGCGCATACCGAAGGTCTGTTTCTGTGTTCTCTGTAAGAAGCCCACACTGATTTCTACAAGTCTCCATAAAAAAACGGAGAATATAAATTACGCTGCAGCTTCTCTCTGCTAAAAACTTCACCAGCAATCCAGTTTAGCTGAAAAGCCTAATTCTGATACTATCCATTTTACATGTCTAGTCTGAGACCATGTCCTCCAATTCATGCATGTCTGAATCAGTCTCATTTGAAGAATCCCTTCCCAAGGGTGTATTCTCGCCGTAGTCCAGATCTCTCCAGTCAAACTCACCATCATTAGCACGTTTCTCCATTGCTTCCCCAATCCGATTACTTGGATGTGGCTTACTATGCC                                                                                                                                                                                      ]
[+] EMBL CB676121             [                  cctttttttTATATGTAAAGTTCCTCCTTTTCTTTTTTTCCCTTTCATTTAGGTGTCATGCTATGTACAAATTTCACGGGAGCAAAAAACCTAAAAGTTACATCCACTTGTTGAAAGAAAGAAAAAACAAGGGTAATAAGAAAACGCATACCAAAGGAC AAAAAAAAACCAAAATAATACTATAGCATCTATTTATGGTACACAGGTAAAATATTTGAAAGAGTAAAAAAGGAACTAAAAAGTCTTCTTTGCCTCTCAGCATTCGCAGGAAACTAACACAGCACTGTACAATTTTCTTTGCGCATACCGAAGGTCTGTTTCTGTGTTCTCTGTAAGAAGCCCACACTGATTTCTACAAGTCTCCATAAAAAAACGGAGAATATAAATTACGCTGCAGCTTCTCTCTGCTAAAAACTTCACCAGCAATCCAGTTTAGCTGAAAAACCTAATTCTGATACTATCCATTTTACATGTCTAGTCTGAGACCATGTCCTCCAATTCATGCATGTCTGAATCAGTCTCATTTGAAGAATCCCTTCCCAAGGGTGTATTCTCGCCGTAGTCCAGATCTCTCCAGTCAAACTCACCATCATTAGCACGTTTCTCCATTGCTTCCCCAATCCGATTACTTGGATGAGGCTTACTATGCCCACTTCTTCCCTTTGTCTTTGCGCAAATACAGTCCATAGGGTGCTCATGGAATTCACCTCTTCCAGGTTTTATCTCATTGGGCTCCCCCATAAATCCCTTCTGAAGTGTC                                                                        ]
[+] EMBL CB633886             [                                       TCCTCCTTTTCTTTTTTTCCCCCTCATTTAGGTGTCATGCTATGTACAAATTTCACGGGAGCAAAAAACCTAAAAGTTACATCCACTTGTTGAAAGAAAGAAAAAACAAGGGTAATAAGAAAACGCATACCAAAGGAC AAAAAAAAACCAAAATAATACTATAGCATCTATTTATGGTACACAGGTAAAATATTTGAAAGAGTAAAAAAGGAACTAAAAAGTCTTCTTTGCCTCTCAGCATTCGCAGGAAACTAACACAGCACTGTACAATTTTCTTTGCGCATACCGAAGGTCTGTTTCTGTGTTCTCTGTAAGAAGCCCACACTGATTTCTACAAGTCTCCATAAAAAAACGGAGAATATAAATTACGCTGCAGCTTCTCTCTGCTAAAAACTTCACCAGCAATCCAGTTTAGCTGAAAAACCTAATTCTGATACTATCCATTTTACATGTCTAGTCTGAGACCATGTCCTCCAATTCATGCATGTCTGAATCAGTCTCATTTGAAGAATCCCTTCCCAAGGGTGTATTCTCGCCGTAGTCCAGATCTCTCCAGTCAAACTCACCATCATTAGCACGTTTCTCCATTGCTTCCCCAATCCGATTACTTGGATGAGGCTTACTATGCCCACTTCTTCCCTTTGTCTTTGCGCAAATACAGTCCATAGGGTGCTCATGGAATTCACCTCTTCCAGGTTTTATCTCATTGGGCTCCCCCATAAATCCCTTCTGAAGTGTCTGAACTTTGGACGAAAATGTTTCCCAACTCATGCTGGGTCGATTGAGAAAGAGTGAGTAAAGCTTCTTGGCA]
[+] EMBL CB632927             [                                                                                                                                                                                                                                                   AAAAAGGGAACTAAAAAGTCTTCTTTGGCTCTCAGGATTGGGAGGAAAGTAACACAGGACTGTACAATTTTCTTTGCGCATACAGAAGGGCTGTTTCTGTGTTCTCTGTAAGAAGCCCAGACTGATTTCTACAAGTCTCCATAAAAAAAGGGAGAATATAAATTACGCTGGAGCTTCTCTCTGCTAAAAACTTCACCAGCAATCCAGTTTAGCTGAAAAACCTAATTCTGATACTATCCATTTTACATGTCTAGTCTGAGACCATGTCCTCCAATTCATGCATGTCTGAATCAGTCTCATTTGAAGAATCCCTTCCCAAGGGTGTATTCTCGCCGTAGTCCAGATCTCTCCAGTCAAACTCACCATCATTAGCACGTTTCTCCATTGCTTCCCCAATCCGATTACTTGGATGAGGCTTACTATGCCCACTTCTTCCCTTTGTCTTTGCGCAAATACAGTCCATAGGGTGCTCATGGAATTCACCTCTTCCAGGTTTTATCTCATTGGGCTCCCCCATAAATCCCTTCTGAAGTGTC                                                                        ]




>consensus_7704#0
AAAANCTACTATACCAAAACTGGAAAATATATGTAAAGTTCCTCCTTTTCTTTTTTTCCC
TTTCATTTAGGTGTCATGCTATGTACAAATTTCACGGGAGCAAAAAACCTAAAAGTTACA
TCCACTTGTTGAAAGAAAGAAAAAACAAGGGTAATAAGAAAACGCATACCAAAGGACAAA
AAAAAACCAAAATAATACTATAGCATCTATTTATGGTACACAGGTAAAATATTTGAAAGA
GTAAAAAAGGAACTAAAAAGTCTTCTTTGCCTCTCAGCATTCGCAGGAAACTAACACAGC
ACTGTACAATTTTCTTTGCGCATACCGAAGGTCTGTTTCTGTGTTCTCTGTAAGAAGCCC
ACACTGATTTCTACAAGTCTCCATAAAAAAACGGAGAATATAAATTACGCTGCAGCTTCT
CTCTGCTAAAAACTTCACCAGCAATCCAGTTTAGCTGAAAAACCTAATTCTGATACTATC
CATTTTACATGTCTAGTCTGAGACCATGTCCTCCAATTCATGCATGTCTGAATCAGTCTC
ATTTGAAGAATCCCTTCCCAAGGGTGTATTCTCGCCGTAGTCCAGATCTCTCCAGTCAAA
CTCACCATCATTAGCACGTTTCTCCATTGCTTCCCCAATCCGATTACTTGGATGAGGCTT
ACTATGCCCACTTCTTCCCTTTGTCTTTGCGCAAATACAGTCCATAGGGTGCTCATGGAA
TTCACCTCTTCCAGGTTTTATCTCATTGGGCTCCCCCATAAATCCCTTCTGAAGTGTCTG
AACTTTGGACGAAAATGTTTCCCAACTCATGCTGGGTCGATTGAGAAAGAGTGAGTAAAG
CTTCTTGGCA

consensusID : consensus_7704#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 583
fasta sequence

                              [AGAGAGAGAACTAGTCTGAGTTTTTTTTTTTTTTTTTTTTATATAAATGCATAGTGCATAATTCTTAATGCATCAAGTATTCAAGTGTAACAAATTCACTAATTTTGTATTTACCTGTGTTCTCTGTAAGAATCCCACACTGATTTCTACAAGTCTCCATAAAAAAACGGAGAATATAAATTACGCTGCAGCTTCTCTCTGCTAAAAACTTCACCAGCAATCCAGTTTAGCTGAAAAACCTAATTCTGATACTATCCATTTTACATGTCTAGTCTGAGACCATGTCCTCCAATTCATGCATGTCTGAATCAGTCTCATTTGAAGAATCCCTTCCCAAGGGTGTATTCTCGCCGTAGTCCAGATCTCTCCAGTCAAACTCACCATCATTAGCACGTTTCTCCATTGCTTCCCCAATCCGATTACTTGGATGAGGCTTACTATGCCCACTTCTTCCCTTTGTCTTTGCGCAAATACAGTCCATAGGGTGCTCATGGAATTCACCTCTTCCAGGTTTTATCTCATTGGGCTCCCCCATAAATCCCTTCTGAAGTGTCTGAACTTTGGACGAAAATGTTTCCCAACT]

[+] EMBL CF326304             [AGAGAGAGAACTAGTCTGAGTTTTTTTTTTTTTTTTTTTTATATAAATGCATAGTGCATAATTCTTAATGCATCAAGTATTCAAGTGTAACAAATTCACTAATTTTGTATTTACCTGTGTTCTCTGTAAGAATCCCACACTGATTTCTACAAGTCTCCATAAAAAAACGGAGAATATAAATTACGCTGCAGCTTCTCTCTGCTAAAAACTTCACCAGCAATCCAGTTTAGCTGAAAAACCTAATTCTGATACTATCCATTTTACATGTCTAGTCTGAGACCATGTCCTCCAATTCATGCATGTCTGAATCAGTCTCATTTGAAGAATCCCTTCCCAAGGGTGTATTCTCGCCGTAGTCCAGATCTCTCCAGTCAAACTCACCATCATTAGCACGTTTCTCCATTGCTTCCCCAATCCGATTACTTGGATGAGGCTTACTATGCCCACTTCTTCCCTTTGTCTTTGCGCAAATACAGTCCATAGGGTGCTCATGGAATTCACCTCTTCCAGGTTTTATCTCATTGGGCTCCCCCATAAATCCCTTCTGAAGTGTCTGAACTTTGGACGAAAATGTTTCCCAACT]




>consensus_7704#1
AGAGAGAGAACTAGTCTGAGTTTTTTTTTTTTTTTTTTTTATATAAATGCATAGTGCATA
ATTCTTAATGCATCAAGTATTCAAGTGTAACAAATTCACTAATTTTGTATTTACCTGTGT
TCTCTGTAAGAATCCCACACTGATTTCTACAAGTCTCCATAAAAAAACGGAGAATATAAA
TTACGCTGCAGCTTCTCTCTGCTAAAAACTTCACCAGCAATCCAGTTTAGCTGAAAAACC
TAATTCTGATACTATCCATTTTACATGTCTAGTCTGAGACCATGTCCTCCAATTCATGCA
TGTCTGAATCAGTCTCATTTGAAGAATCCCTTCCCAAGGGTGTATTCTCGCCGTAGTCCA
GATCTCTCCAGTCAAACTCACCATCATTAGCACGTTTCTCCATTGCTTCCCCAATCCGAT
TACTTGGATGAGGCTTACTATGCCCACTTCTTCCCTTTGTCTTTGCGCAAATACAGTCCA
TAGGGTGCTCATGGAATTCACCTCTTCCAGGTTTTATCTCATTGGGCTCCCCCATAAATC
CCTTCTGAAGTGTCTGAACTTTGGACGAAAATGTTTCCCAACT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7704#0      AAAANCTACTATACCAAAACTGGAAAATATATGTAAAGTTCCTCCTTTTCTTTTTTTCCC 60
consensus_7704#1      ------------------------------------------------------------
                                                                                  

consensus_7704#0      TTTCATTTAGGTGTCATGCTATGTACAAATTTCACGGGAGCAAAAAACCTAAAAGTTACA 120
consensus_7704#1      ------------------------------------------------------------
                                                                                  

consensus_7704#0      TCCACTTGTTGAAAGAAAGAAAAAACAAGGGTAATAAGAAAACGCATACCAAAGGACAAA 180
consensus_7704#1      ------------------------------------------------------------
                                                                                  

consensus_7704#0      AAAAAACCAAAATAATACTATAGCATCTATTTATGGTACACAGGTAAAATATTTGAAAGA 240
consensus_7704#1      -------------------------------------------------------AGAGA 5
                                                                             * ***

consensus_7704#0      GTAAAAAAG---GAACTAAAAAGTCTTCTTTGCCTCTCAGCATTCGCAGGA---AACTAA 294
consensus_7704#1      GAGAACTAGTCTGAGTTTTTTTTTTTTTTTTTTTTATATAAATGCATAGTGCATAATTCT 65
                      *  **  **   **  *      * ** ***   * *    ** *  **     ** *  

consensus_7704#0      CACAGCACTGTACAATTTTCTTTG-CGCATACCGAAGGTCTGTTT----CTGTGTTCTCT 349
consensus_7704#1      TAATGCATCAAGTATTCAAGTGTAACAAATTCACTAATTTTGTATTTACCTGTGTTCTCT 125
                       *  ***      * *    * *  *  ** *   *  * *** *    ***********

consensus_7704#0      GTAAGAAGCCCACACTGATTTCTACAAGTCTCCATAAAAAAACGGAGAATATAAATTACG 409
consensus_7704#1      GTAAGAATCCCACACTGATTTCTACAAGTCTCCATAAAAAAACGGAGAATATAAATTACG 185
                      ******* ****************************************************

consensus_7704#0      CTGCAGCTTCTCTCTGCTAAAAACTTCACCAGCAATCCAGTTTAGCTGAAAAACCTAATT 469
consensus_7704#1      CTGCAGCTTCTCTCTGCTAAAAACTTCACCAGCAATCCAGTTTAGCTGAAAAACCTAATT 245
                      ************************************************************

consensus_7704#0      CTGATACTATCCATTTTACATGTCTAGTCTGAGACCATGTCCTCCAATTCATGCATGTCT 529
consensus_7704#1      CTGATACTATCCATTTTACATGTCTAGTCTGAGACCATGTCCTCCAATTCATGCATGTCT 305
                      ************************************************************

consensus_7704#0      GAATCAGTCTCATTTGAAGAATCCCTTCCCAAGGGTGTATTCTCGCCGTAGTCCAGATCT 589
consensus_7704#1      GAATCAGTCTCATTTGAAGAATCCCTTCCCAAGGGTGTATTCTCGCCGTAGTCCAGATCT 365
                      ************************************************************

consensus_7704#0      CTCCAGTCAAACTCACCATCATTAGCACGTTTCTCCATTGCTTCCCCAATCCGATTACTT 649
consensus_7704#1      CTCCAGTCAAACTCACCATCATTAGCACGTTTCTCCATTGCTTCCCCAATCCGATTACTT 425
                      ************************************************************

consensus_7704#0      GGATGAGGCTTACTATGCCCACTTCTTCCCTTTGTCTTTGCGCAAATACAGTCCATAGGG 709
consensus_7704#1      GGATGAGGCTTACTATGCCCACTTCTTCCCTTTGTCTTTGCGCAAATACAGTCCATAGGG 485
                      ************************************************************

consensus_7704#0      TGCTCATGGAATTCACCTCTTCCAGGTTTTATCTCATTGGGCTCCCCCATAAATCCCTTC 769
consensus_7704#1      TGCTCATGGAATTCACCTCTTCCAGGTTTTATCTCATTGGGCTCCCCCATAAATCCCTTC 545
                      ************************************************************

consensus_7704#0      TGAAGTGTCTGAACTTTGGACGAAAATGTTTCCCAACTCATGCTGGGTCGATTGAGAAAG 829
consensus_7704#1      TGAAGTGTCTGAACTTTGGACGAAAATGTTTCCCAACT---------------------- 583
                      **************************************                      

consensus_7704#0      AGTGAGTAAAGCTTCTTGGCA 850
consensus_7704#1      ---------------------