These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7715#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1471 fasta sequence [CGTGCCGCCGCCGCCGCCGCCGCTTCATCCCGACGCCGAAAGCCCGAAACCTAAACACCTCCTCTTCCTCGCACGCCCATCTCCGGATTCCAACCAAATCTCCGGGATGGCCTCGACCTGCTTCCGCGCCGCCGNCCGCATGGNCTCCTCCGCCTGCCGCTCGGCGGNCTCCCGCTCAATCCCCTCCGCCGCGCGGCGCGGCGCCCCTCGAATNCTGCAGGCTGCCGGTGGAGCTCGGGTGCAGCGCGGGGTTGTCGCTGCTGCCGCTGCACAGCGCGGTGGCGGCGGCGAGGCTGACGTCGCGGCTGAGCACGGCGTCGCGGAGCTGCTGCGCGCTCTCTCAGGGTACCCTCTGTCGCACCTATCCCGGACTTTAACATCAATCAATACCATCGATGAGATGCACTTGCCTGTCTTTTCCGTTTGGGTGAGAACCGTGCCCGTGCGTATTATTGTACCAGTACTTCATTTTCTTCGCCCGCTACTGGCGCAATTACTTGTTCATCTGCTGCTGTTTGTTTCGTCAATGTAATAGTTTTGCCCTCAACCAAGCGTTTTTGTGCTCAGCTCTCTTATTTGTGTGATTGATGTGTGACATAACTCTGTGCCGTTGTGAACATATAACGATTTCTATGCATACACTAATCATTTTCTCCTTTAGTGCACTAAAATAGTGTTGCATACATGATAGTGATACATCAACATTTTTACAGTACAATCCTTTTTTTCTTTGATGATCAACACACCATCACATCAATTTCATGTTGTATATAATAAGTCAAGAGATTCGCTTGTTAAGTTTTCTTTTTTTTTTTGATGAATTGAGGTCAATTGAGTAAGACATCTGGTTTCTGCAGGCACATGACTTGCTAGTTCTTGAAAGATTTTACCAGGAGCTTGCTGTTTTGCTTCACAATCATCGAGAATGAGTGCCTTAACATGTCAAATTGTAATCAAGACTAGCGTTATGTTTTTTAAGCTAGAATCTTAGCTGCCTATGTTGAGGGGCAACATGATGGAATAAAGTAACATCATTTTACATGTTTTGCGTAATAGTTGGCTGTTTGCCCAAGTCTATTTGTCTGTGAGATATTTAATACAATCTACGTAATTTTCCTATGGCATTTGCAATTTTTTCCTAGACTTTCCTGTTTGCATGGATGCATGCTCGTTTGATTTTTTCTTTCAACAAAGAATTTTATAACATGGTTGCCATTTTAGTTTACAATATGATCATTCTTCTCTTCTCAGATGAAAGTGATGGTACGTGAAACATTTACGCAATGTCTTAAAGGTGGTGCTTGGCTGTTATGGCAATGCTGCACATGTATTACTGCGACATCCGCCTTAGTCATAGAATTTATGGTTTTGACACTCCGGATTTTGTAAAAGTTATTTTGGTAGTGTCAGGGATAAACATCAATGCTGTATGCTTCCACACTTATAAAGTTATAATGAAGCAATTGAGATA] [+] EMBL AU223325 [CGTGCCGCCGCCGCCGCCGCCGCTTCATCCCGACGCCGAAAGCCCGAAACCTAAACACCTCCTCTTCCTCGCACGCCCATCTCCGGATTCCAACCAAATCTCCGGGATGGCCTCGACCTGCTTCCGCGCCGCCGNCCGCATGGNCTCCTCCGCCTGCCGCTCGGCGGNCTCCCGCTCAATCCCCTCCGCCGCGCGGCGCGGCGCCCCTCGAATNCTGCAGGCTGCC ] [+] EMBL AK073923 [ GCCGAAAGCCCGAAACCTAAACACCTCCTCTTCCTCGCACGCCCATCTCCGGATTCCAACCAAATCTCCGGGATGGCCTCGACCTGCTTCCGCGCCGCCGCCCGCATGGCCTCCTCCGCCTGCCGCTCGGCGGCCTCCCGCTCAATCCCCTCCGCCGCGCGGCGCGGCGCCCCTCGCAT CTCCAGGCTGCCGGTGGAGCTCGGGTGCAGCGCGGGGTTGTCGCTGCTGCCGCTGCACAGCGCGGTGGCGGCGGCGAGGCTGACGTCGCGGCTGAGCACGGCGTCGCGGAGCTGCTGCGCGCTCTCTCAGGGTACCCTCTGTCGCACCTATCCCGGACTTTAACATCAATCAATACCATCGATGAGATGCACTTGCCTGTCTTTTCCGTTTGGGTGAGAACCGTGCCCGTGCGTATTATTGTACCAGTACTTCATTTTCTTCGCCCGCTACTGGCGCAATTACTTGTTCATCTGCTGCTGTTTGTTTCGTCAATGTAATAGTTTTGCCCTCAACCAAGCGTTTTTGTGCTCAGCTCTCTTATTTGTGTGATTGATGTGTGACATAACTCTGTGCCGTTGTGAACATATAACGATTTCTATGCATACACTAATCATTTTCTCCTTTAGTGCACTAAAATAGTGTTGCATACATGATAGTGATACATCAACATTTTTACAGTACAATCCTTTTTTTCTTTGATGATCAACACACCATCACATCAATTTCATGTTGTATATAATAAGTCAAGAGATTCGCTTGTTAAGTTTTCTTTTTTTTTTTGATGAATTGAGGTCAATTGAGTAAGACATCTGGTTTCTGCAGGCACATGACTTGCTAGTTCTTGAAAGATTTTACCAGGAGCTTGCTGTTTTGCTTCACAATCATCGAGAATGAGTGCCTTAACATGTCAAATTGTAATCAAGACTAGCGTTATGTTTTTTAAGCTAGAATCTTAGCTGCCTATGTTGAGGGGCAACATGATGGAATAAAGTAACATCATTTTACATGTTTTGCGTAATAGTTGGCTGTTTGCCCAAGTCTATTTGTCTGTGAGATATTTAATACAATCTACGTAATTTTCCTATGGCATTTGCAATTTTTTCCTAGACTTTCCTGTTTGCATGGATGCATGCTCGTTTGATTTTTTCTTTCAACAAAGAATTTTATAACATGGTTGCCATTTTAGTTTACAATATGATCATTCTTCTCTTCTCAGATGAAAGTGATGGTACGTGAAACATTTACGCAATGTCTTAAAGGTGGTGCTTGGCTGTTATGGCAATGCTGCACATGTATTACTGCGACATCCGCCTTAGTCATAGAATTTATGGTTTTGACACTCCGGATTTTGTAAAAGTTATTTTGGTAGTGTCAGGGATAAACATCAATGCTGTATGCTTCCACACTTATAAAGTTATAATGAAGCAATTGAGATA] consensusID : consensus_7715#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 468 fasta sequence [CTTCCGCGCCGCCGCCCGCATGGCCTCCTCCGCCTGCCGCTCGGCGGCCTCCCGCTCAATCCCCTCCGCCGCGCGGCGCGGCGCCCCTCGCATCTCCAGGCTGCCGGTGGAGCTCGGGTGCAGCGCGGGGTTGTCGCTGCTGCCGCTGCACAGCGCGGTGGCGGCGGCGAGGCTGACGTCGCGGCTGAGCACGGCGTCGCGGAGCTGCTGCGCGCTCTCTCAGGAGATGGGTCAGTCTGTCCCAAGGTGATAAATGCTGGAAGACCTGCTCATGTCGTGCTATCAGACAATTGATTTTGTAGAGTGAACTAAATTGGTTTCTGTGTTGCCTGATTTTACCCCTCCTAGAACTGTGGTTCTGTTGGACCTTTCAAAGTTTTTGAGATAATGCCCCTTGATATCATTTGTTAAAAACAATCAAGGACATAATGCAAAAGCCCAAGCTGTATTTCTTAGTTACAAAAAAAA] [+] EMBL CA756902 [CTTCCGCGCCGCCGCCCGCATGGCCTCCTCCGCCTGCCGCTCGGCGGCCTCCCGCTCAATCCCCTCCGCCGCGCGGCGCGGCGCCCCTCGCATCTCCAGGCTGCCGGTGGAGCTCGGGTGCAGCGCGGGGTTGTCGCTGCTGCCGCTGCACAGCGCGGTGGCGGCGGCGAGGCTGACGTCGCGGCTGAGCACGGCGTCGCGGAGCTGCTGCGCGCTCTCTCAGGAGATGGGTCAGTCTGTCCCAAGGTGATAAATGCTGGAAGACCTGCTCATGTCGTGCTATCAGACAATTGATTTTGTAGAGTGAACTAAATTGGTTTCTGTGTTGCCTGATTTTACCCCTCCTAGAACTGTGGTTCTGTTGGACCTTTCAAAGTTTTTGAGATAATGCCCCTTGATATCATTTGTTAAAAACAATCAAGGACATAATGCAAAAGCCCAAGCTGTATTTCTTAGTTACAAAAAAAA] consensusID : consensus_7715#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 434 fasta sequence [CATGGCCTCCTCCGCCTGCCGCTCGGCGGCCTCCCGCTCAATCCCCTCCGCCGCGCGGCGCGGCGCCCCTCGCATCTCCAGGCTGCCGGTGGAGCTCGGGTGCAGCGCGGGGTTGTCGCTGCTGCCGCTGCACAGCGCGGTGGCGGCGGCGAGGCTGACGTCGCGGCTGAGCACGGCGTCGCGGAGCTGCTGCGCGCTCTCTCAGGATGAAAGTGATGGTACGTGAAACATTTACGCAATGTCTTAAAGGTGGTGCTTGGCTGTTATGGCAATGCTGCACATGTATTACTGCGACATCCGCCTTAGTCATAGAATTTATGGTTTTGACACTCCGGATTTTGTAAAAGTTATTTTGGTAGTGTCAGGGATAAACATCAATGCTGTATGCTTCCACACTTATAAAGTTATAATGAAGCAATTGAGATATTCAAAAA] [+] EMBL AU223326 [CATGGCCTCCTCCGCCTGCCGCTCGGCGGCCTCCCGCTCAATCCCCTCCGCCGCGCGGCGCGGCGCCCCTCGCATCTCCAGGCTGCCGGTGGAGCTCGGGTGCAGCGCGGGGTTGTCGCTGCTGCCGCTGCACAGCGCGGTGGCGGCGGCGAGGCTGACGTCGCGGCTGAGCACGGCGTCGCGGAGCTGCTGCGCGCTCTCTCAGGATGAAAGTGATGGTACGTGAAACATTTACGCAATGTCTTAAAGGTGGTGCTTGGCTGTTATGGCAATGCTGCACATGTATTACTGCGACATCCGCCTTAGTCATAGAATTTATGGTTTTGACACTCCGGATTTTGTAAAAGTTATTTTGGTAGTGTCAGGGATAAACATCAATGCTGTATGCTTCCACACTTATAAAGTTATAATGAAGCAATTGAGATATTCAAAAA] consensusID : consensus_7715#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 286 fasta sequence [CGTGCCGCCGNCGCCGCCGCCGCTTCATCCCGACGCCGAAAGCCCGAAACCTAAACACCTCCTCTTCCTCGCACGNCCATCTCCGGATTCCAACCAAATCTCCGGGATGGCCTCGACCTGCTTCCGCGCCGNCGNCCGCATGGCCTCCTCCGNCTGCCGCTCGGCGCCTCCCGCTCAATCCCCTCCGNCGCGCGCGNGGGCCCCTCGCATNTCCAGGCTGCCGTTGGAGCTCGGGTGAAGNGCGTNGGTTGTCGTTGTTGCCGTTGNACAGGCGGTGGCGTGCGTC] [+] EMBL AU161832 [CGTGCCGCCGNCGCCGCCGCCGCTTCATCCCGACGCCGAAAGCCCGAAACCTAAACACCTCCTCTTCCTCGCACGNCCATCTCCGGATTCCAACCAAATCTCCGGGATGGCCTCGACCTGCTTCCGCGCCGNCGNCCGCATGGCCTCCTCCGNCTGCCGCTCGGCGCCTCCCGCTCAATCCCCTCCGNCGCGCGCGNGGGCCCCTCGCATNTCCAGGCTGCCGTTGGAGCTCGGGTGAAGNGCGTNGGTTGTCGTTGTTGCCGTTGNACAGGCGGTGGCGTGCGTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7715#0 CGTGCCGCCGCCGCCGCCGCCGCTTCATCCCGACGCCGAAAGCCCGAAACCTAAACACCT 60 consensus_7715#3 CGTGCCGCCGNCGCCGCCGCCGCTTCATCCCGACGCCGAAAGCCCGAAACCTAAACACCT 60 consensus_7715#1 ------------------------------------------------------------ consensus_7715#2 ------------------------------------------------------------ consensus_7715#0 CCTCTTCCTCGCACGCCCATCTCCGGATTCCAACCAAATCTCCGGGATGGCCTCGACCTG 120 consensus_7715#3 CCTCTTCCTCGCACGNCCATCTCCGGATTCCAACCAAATCTCCGGGATGGCCTCGACCTG 120 consensus_7715#1 ------------------------------------------------------------ consensus_7715#2 ------------------------------------------------------------ consensus_7715#0 CTTCCGCGCCGCCGNCCGCATGGNCTCCTCCGCCTGCCGCTCGGCGGNCTCCCGCTCAAT 180 consensus_7715#3 CTTCCGCGCCGNCGNCCGCATGGCCTCCTCCGNCTGCCGCTCGGCG-CCTCCCGCTCAAT 179 consensus_7715#1 CTTCCGCGCCGCCGCCCGCATGGCCTCCTCCGCCTGCCGCTCGGCGGCCTCCCGCTCAAT 60 consensus_7715#2 ------------------CATGGCCTCCTCCGCCTGCCGCTCGGCGGCCTCCCGCTCAAT 42 ***** ******** ************* ************ consensus_7715#0 CCCCTCCGCCGCGCGGCGCGGCGCCCCTCGAATNCTGCAGGCTGCCGGTGGAGCTCGGGT 240 consensus_7715#3 CCCCTCCGNCGCGCG-CGNGG-GCCCCTCGCATN-TCCAGGCTGCCGTTGGAGCTCGGGT 236 consensus_7715#1 CCCCTCCGCCGCGCGGCGCGGCGCCCCTCGCATC-TCCAGGCTGCCGGTGGAGCTCGGGT 119 consensus_7715#2 CCCCTCCGCCGCGCGGCGCGGCGCCCCTCGCATC-TCCAGGCTGCCGGTGGAGCTCGGGT 101 ******** ****** ** ** ******** ** * ********** ************ consensus_7715#0 GCAGCGCG-GGGTTGTCGCTGCTGCCGCTGCACAGCGCGGTGGCG-GCGGCGAGGCTGAC 298 consensus_7715#3 GAAGNGCGTNGGTTGTCGTTGTTGCCGTTGNACAG-GCGGTGGCGTGCGTC--------- 286 consensus_7715#1 GCAGCGCG-GGGTTGTCGCTGCTGCCGCTGCACAGCGCGGTGGCG-GCGGCGAGGCTGAC 177 consensus_7715#2 GCAGCGCG-GGGTTGTCGCTGCTGCCGCTGCACAGCGCGGTGGCG-GCGGCGAGGCTGAC 159 * ** *** ******** ** ***** ** **** ********* *** * consensus_7715#0 GTCGCGGCTGAGCACGGCGTCGCGGAGCTGCTGCGCGCTCTCTCAGGGTACCCTCTGTCG 358 consensus_7715#3 ------------------------------------------------------------ consensus_7715#1 GTCGCGGCTGAGCACGGCGTCGCGGAGCTGCTGCGCGCTCTCTCAGGAGA---TGGGTCA 234 consensus_7715#2 GTCGCGGCTGAGCACGGCGTCGCGGAGCTGCTGCGCGCTCTCTCAGGATG---------A 210 consensus_7715#0 CACCTATCCCGGACTTTAACATCAATCAATACCATCGATGAGATGCACTTGCCTGTCTTT 418 consensus_7715#3 ------------------------------------------------------------ consensus_7715#1 GTCTGTCCCAAGGTGATAAATGCTGGAAGACCTGCTCATGTCGTGCTATCAGACAATTGA 294 consensus_7715#2 AAGTGATGGTACGTGAAACATTTACGCAATGTCTTAAAGGTGGTGCT------TGGCTGT 264 consensus_7715#0 TCCGTTTGGGTGAGAACCGTGCCCGTGCGTATTATTGTACCAGTACTTC---ATTTTCTT 475 consensus_7715#3 ------------------------------------------------------------ consensus_7715#1 TTTTGTAGAGTGAACTAAATTGGTTTCTGTGTTGCCTGATTTTACCCCT---CCTAGAAC 351 consensus_7715#2 TATGGC--AATGCTGCACATGTATTACTGCGACATCCGCCTTAGTCATAGAATTTATGGT 322 consensus_7715#0 CGCCCGCTACTGGCGCAATTACTTGTTCATCTGCTGCTGTTTGTTTCGTCAATGTAATAG 535 consensus_7715#3 ------------------------------------------------------------ consensus_7715#1 TGTGGTTCTGTTGGACCTTTCAAAGTTTTTGAGATAATGCCCCTTGATATCATTTGTTAA 411 consensus_7715#2 TTTGACACTCCGGATTTTGTAAAAGTTATTTTGGTAGTGTCAGGGATAAACATCAATGCT 382 consensus_7715#0 TTTTGCCCTCAACCAAGCGTTTTTGTGCTCAGCTCTCTTATTTGTGTGATTGATGTGTGA 595 consensus_7715#3 ------------------------------------------------------------ consensus_7715#1 AAACAATCAAGGACATAATGCAAAAGCCCAAGCTGTATTTCTTAGTTACAAAAAAAA--- 468 consensus_7715#2 GTATGCTTCCACACTTATAAAGTTATAATGAAGCAATTGAGATATTCAAAAA-------- 434 consensus_7715#0 CATAACTCTGTGCCGTTGTGAACATATAACGATTTCTATGCATACACTAATCATTTTCTC 655 consensus_7715#3 ------------------------------------------------------------ consensus_7715#1 ------------------------------------------------------------ consensus_7715#2 ------------------------------------------------------------ consensus_7715#0 CTTTAGTGCACTAAAATAGTGTTGCATACATGATAGTGATACATCAACATTTTTACAGTA 715 consensus_7715#3 ------------------------------------------------------------ consensus_7715#1 ------------------------------------------------------------ consensus_7715#2 ------------------------------------------------------------ consensus_7715#0 CAATCCTTTTTTTCTTTGATGATCAACACACCATCACATCAATTTCATGTTGTATATAAT 775 consensus_7715#3 ------------------------------------------------------------ consensus_7715#1 ------------------------------------------------------------ consensus_7715#2 ------------------------------------------------------------ consensus_7715#0 AAGTCAAGAGATTCGCTTGTTAAGTTTTCTTTTTTTTTTTGATGAATTGAGGTCAATTGA 835 consensus_7715#3 ------------------------------------------------------------ consensus_7715#1 ------------------------------------------------------------ consensus_7715#2 ------------------------------------------------------------ consensus_7715#0 GTAAGACATCTGGTTTCTGCAGGCACATGACTTGCTAGTTCTTGAAAGATTTTACCAGGA 895 consensus_7715#3 ------------------------------------------------------------ consensus_7715#1 ------------------------------------------------------------ consensus_7715#2 ------------------------------------------------------------ consensus_7715#0 GCTTGCTGTTTTGCTTCACAATCATCGAGAATGAGTGCCTTAACATGTCAAATTGTAATC 955 consensus_7715#3 ------------------------------------------------------------ consensus_7715#1 ------------------------------------------------------------ consensus_7715#2 ------------------------------------------------------------ consensus_7715#0 AAGACTAGCGTTATGTTTTTTAAGCTAGAATCTTAGCTGCCTATGTTGAGGGGCAACATG 1015 consensus_7715#3 ------------------------------------------------------------ consensus_7715#1 ------------------------------------------------------------ consensus_7715#2 ------------------------------------------------------------ consensus_7715#0 ATGGAATAAAGTAACATCATTTTACATGTTTTGCGTAATAGTTGGCTGTTTGCCCAAGTC 1075 consensus_7715#3 ------------------------------------------------------------ consensus_7715#1 ------------------------------------------------------------ consensus_7715#2 ------------------------------------------------------------ consensus_7715#0 TATTTGTCTGTGAGATATTTAATACAATCTACGTAATTTTCCTATGGCATTTGCAATTTT 1135 consensus_7715#3 ------------------------------------------------------------ consensus_7715#1 ------------------------------------------------------------ consensus_7715#2 ------------------------------------------------------------ consensus_7715#0 TTCCTAGACTTTCCTGTTTGCATGGATGCATGCTCGTTTGATTTTTTCTTTCAACAAAGA 1195 consensus_7715#3 ------------------------------------------------------------ consensus_7715#1 ------------------------------------------------------------ consensus_7715#2 ------------------------------------------------------------ consensus_7715#0 ATTTTATAACATGGTTGCCATTTTAGTTTACAATATGATCATTCTTCTCTTCTCAGATGA 1255 consensus_7715#3 ------------------------------------------------------------ consensus_7715#1 ------------------------------------------------------------ consensus_7715#2 ------------------------------------------------------------ consensus_7715#0 AAGTGATGGTACGTGAAACATTTACGCAATGTCTTAAAGGTGGTGCTTGGCTGTTATGGC 1315 consensus_7715#3 ------------------------------------------------------------ consensus_7715#1 ------------------------------------------------------------ consensus_7715#2 ------------------------------------------------------------ consensus_7715#0 AATGCTGCACATGTATTACTGCGACATCCGCCTTAGTCATAGAATTTATGGTTTTGACAC 1375 consensus_7715#3 ------------------------------------------------------------ consensus_7715#1 ------------------------------------------------------------ consensus_7715#2 ------------------------------------------------------------ consensus_7715#0 TCCGGATTTTGTAAAAGTTATTTTGGTAGTGTCAGGGATAAACATCAATGCTGTATGCTT 1435 consensus_7715#3 ------------------------------------------------------------ consensus_7715#1 ------------------------------------------------------------ consensus_7715#2 ------------------------------------------------------------ consensus_7715#0 CCACACTTATAAAGTTATAATGAAGCAATTGAGATA 1471 consensus_7715#3 ------------------------------------ consensus_7715#1 ------------------------------------ consensus_7715#2 ------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||