cluster # 7718

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Oryza sativa
cluster # 7718 cluster # 7718 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7718#0 length = 653 sequences # 4

consensus_7718#1 length = 263 sequences # 1

consensusID : consensus_7718#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 653
fasta sequence

                              [TAGTCTCGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAACCAAGCAGATTCTGCTTTGCATTACATTATTATCGTTTAATCAATTATTCGAAGGGTCTACGAACAGATTGGTTCGAAGAGAGGATTTTTTGTTCGAAACGAAGATTTAAAATTTCTTTTCCTACGATTATGAATACAACCCACAACTATCTCTAGTTTATCCAGATTACATCCCCTGTACGGGTGTACACGACTGACTCATGCTTACATTGAATCGCTGAACTAAAAGAGAGAAAGAGAGAAGCCACCCTACAACGGACGCTCGCAGGTTGTAAAACCAGCATAAATTTCAAGGTTTTACAGGTTCTATCTCGGTCTCCATGCCATTCCACCCACACTCCCAGAACCATAGCTTTGCGCGCTGTTATTACTGTTGGGTATCACACCATACTGCGACTGCTGCACCATGCTCGCCGGCGCATCGGCGGTCGTGGGGCCCATCTGCTGCGGGAAGCCAA-AATTGGCCTGCAGGCCGGCTTGCCCTAGGTGAGACTGCTGCTGGATGCCAGGAATTTGCTGCAAAGGGTGCGGGACTGGGACGAATCCCTGCGGGATGCACTCCCTGGGTATCAGATGGCACAGTGCGTCTTCGGGGTGGCAAAGTCA]

[+] EMBL CF326181             [TAGTCTCGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAACCAAGCAGATTCTGCTTTGCATTACATTATTATCGTTTAATCAATTATTCGAAGGGTCTACGAACAGATTGGTTCGAAGAGAGGATTTTTTGTTCGAAACGAAGATTTAAAATTTCTTTTCCTACGATTATGAATACAACCCACAACTATCTCTAGTTTATCCAGATTACATCCCCTGTACGGGTGTACACGACTGACTCATGCTTACATTGAATCGCTGAACTAAAAGAGAGAAAGAGAGAAGCCACCCTACAACGGACGCTCGCAGGTTGTAAAACCAGCATAAATTTCAAGGTTTTACAGGTTCTATCTCGGTCTCCATGCCATTCCACCCACACTCCCAAAA                                                                                                                                                                                                                                                                     ]
[+] EMBL CB632694             [                                                 AAGCAGGTTCTGCTTTGCATTCTCTTATTATTGTTTAATCAATTATTCGAAGTGTCTACGAACAGATTGGTTCGAAGAGAGGAGCTATTGTTCGCAACGAAGATTTAAAATTTCTTTTCCTACGATTATGAATACAACCCACAACTATCTCTAGTTTATCCAGATTACATCCCCTGTACGGGTGTACACGACTGACTCATGCTTACATTGAATCGCTGAACTAAAAGAGAG  AGAGAGAAGCCACCCTACAACGGACGCTCGCAGGTTGTAAAACCAGCATAAATTTCAAGGTTTTACAGGTTCTATCTCGGTCTCCATGCCATTCCACCCACACTCCCAGAACCATAGCTTTGCGCGCTGTTATTACTGTTGGGTATCACACCATACTGCGACTGCTGCACC                                                                                                                                                                                                         ]
[+] EMBL CB667616             [                                                                                                                                tcctTTTTTTGTTCGAAACGAAGATTTAAAATTTCTTTTCCTACGATTATGAATACAACCCACAACTATCTCTAGTTTATCCAAATTACATCCCCTGTACGGGTGTACACGACTGACTCATGCTTACATTGAATCGCTGAACTAAAAGAGAGAAAGAGAGAAGCCACCCTACAACGGACGCTCGCAGGTTGTAAAACCAGCATAAATTTCAAGGTTTTACAGGTTCTATCTCGGTCTCCATGCCATTCCACCCACACTCCCAGAACCATAGCTTTGCGCGCTGTTATTACTGTTGGGTATCACACCATACTGCGACTGCTGCACCATGCTCGCCGGCGCATCGGCGGTCGTGGGGCCCATCTGCTGCGGGAAGCCAA AATTGGCCTGCAGGCCGGCTTGCCCTAGGTGAGACTGCTGCTGGATGCCAGGAATTTGCTGCAAAGGGTGCGGGACTGGGACGAATCCCTGCGGGATGCACTCCCTGGGTATCAGATGGCACAGTGCGTCTTCGGGGTGGCAAAGTCA]
[-] EMBL AU056763             [                                                                                                                                    TTTTTTGTTCGAAACGAAGATTTAAAATTTCTTTTCCTACGATTATGAATACAACCCACAACTATCTCTAGTTTATCCAGATTACATCCCCTGTACGGGTGTACACGACTGACTCATGCTTACATTGAATCGCTGAACTAAAAGAGAGAAAGAGAGAAGCCACCCTACAACGGACGCTCGCAGGTTGTAAAACCAGCATAAATTTCAAGGTTTTACAGGTTCTATCTCGGTCTCCATGCCATTCCACCCACACTCCCAGAACCATAGCTTTGCGCGCTGTTATTACTGTTGGGTATCACACCATACTGCGACTGCTGCACCATGCTCGCCGGCGCA CGGCGGCGGCGGCGCCGCCCTGC GCCGGCCACCAAGCATTGGTCTGCTGCCAGGCTTGCGCTGGCTGAAGCTGC                                                                                                              ]




>consensus_7718#0
TAGTCTCGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAACCAAGCAGATTCT
GCTTTGCATTACATTATTATCGTTTAATCAATTATTCGAAGGGTCTACGAACAGATTGGT
TCGAAGAGAGGATTTTTTGTTCGAAACGAAGATTTAAAATTTCTTTTCCTACGATTATGA
ATACAACCCACAACTATCTCTAGTTTATCCAGATTACATCCCCTGTACGGGTGTACACGA
CTGACTCATGCTTACATTGAATCGCTGAACTAAAAGAGAGAAAGAGAGAAGCCACCCTAC
AACGGACGCTCGCAGGTTGTAAAACCAGCATAAATTTCAAGGTTTTACAGGTTCTATCTC
GGTCTCCATGCCATTCCACCCACACTCCCAGAACCATAGCTTTGCGCGCTGTTATTACTG
TTGGGTATCACACCATACTGCGACTGCTGCACCATGCTCGCCGGCGCATCGGCGGTCGTG
GGGCCCATCTGCTGCGGGAAGCCAAAATTGGCCTGCAGGCCGGCTTGCCCTAGGTGAGAC
TGCTGCTGGATGCCAGGAATTTGCTGCAAAGGGTGCGGGACTGGGACGAATCCCTGCGGG
ATGCACTCCCTGGGTATCAGATGGCACAGTGCGTCTTCGGGGTGGCAAAGTCA

consensusID : consensus_7718#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 263
fasta sequence

                              [AATTATGAATACAACCACAACTATCTCTAGGTTTTATCCCCCCAAAGGGATTACATTCCCCGTGTACGGGTGGTACACGACTGACTCATGCTTACATGAATCGCTGAACTAAAAGAGAGAAAGAGAGAAGCCACCCTACAAGGACGCTCGCAGGTGTAAAACCAGCATAAATTTCAAGGTTTTACAGGTTCTATCTCCGTCTCCATGCCATTCCACCCACACTCCCAGAACCATAGCTTGTGGCGCTGTTATTACTGTGGGTA]

[+] EMBL BM422310             [AATTATGAATACAACCACAACTATCTCTAGGTTTTATCCCCCCAAAGGGATTACATTCCCCGTGTACGGGTGGTACACGACTGACTCATGCTTACATGAATCGCTGAACTAAAAGAGAGAAAGAGAGAAGCCACCCTACAAGGACGCTCGCAGGTGTAAAACCAGCATAAATTTCAAGGTTTTACAGGTTCTATCTCCGTCTCCATGCCATTCCACCCACACTCCCAGAACCATAGCTTGTGGCGCTGTTATTACTGTGGGTA]




>consensus_7718#1
AATTATGAATACAACCACAACTATCTCTAGGTTTTATCCCCCCAAAGGGATTACATTCCC
CGTGTACGGGTGGTACACGACTGACTCATGCTTACATGAATCGCTGAACTAAAAGAGAGA
AAGAGAGAAGCCACCCTACAAGGACGCTCGCAGGTGTAAAACCAGCATAAATTTCAAGGT
TTTACAGGTTCTATCTCCGTCTCCATGCCATTCCACCCACACTCCCAGAACCATAGCTTG
TGGCGCTGTTATTACTGTGGGTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7718#0      TAGTCTCGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAACCAAGCAGATTCT 60
consensus_7718#1      ------------------------------------------------------------
                                                                                  

consensus_7718#0      GCTTTGCATTACATTATTATCGTTTAATCAATTATTCGAAGGGTCTACGAACAGATTGGT 120
consensus_7718#1      ------------------------------------------------------------
                                                                                  

consensus_7718#0      TCGAAGAGAGGATTTTTTGTTCGAAACGAAGATTTAAAATTTCTTTTCCTACGATTATGA 180
consensus_7718#1      ----------------------------------------------------AATTATGA 8
                                                                           *******

consensus_7718#0      ATACAACCCACAACTATCTCTAG--TTTATCC--------AGATTACATCCCC--TGTAC 228
consensus_7718#1      ATACAACC-ACAACTATCTCTAGGTTTTATCCCCCCAAAGGGATTACATTCCCCGTGTAC 67
                      ******** **************  *******         ******** ***  *****

consensus_7718#0      GGGTG-TACACGACTGACTCATGCTTACATTGAATCGCTGAACTAAAAGAGAGAAAGAGA 287
consensus_7718#1      GGGTGGTACACGACTGACTCATGCTTACAT-GAATCGCTGAACTAAAAGAGAGAAAGAGA 126
                      ***** ************************ *****************************

consensus_7718#0      GAAGCCACCCTACAACGGACGCTCGCAGGTTGTAAAACCAGCATAAATTTCAAGGTTTTA 347
consensus_7718#1      GAAGCCACCCTACAA-GGACGCTCGCAGGT-GTAAAACCAGCATAAATTTCAAGGTTTTA 184
                      *************** ************** *****************************

consensus_7718#0      CAGGTTCTATCTCGGTCTCCATGCCATTCCACCCACACTCCCAGAACCATAGCTTTGCGC 407
consensus_7718#1      CAGGTTCTATCTCCGTCTCCATGCCATTCCACCCACACTCCCAGAACCATAGCTTGTGGC 244
                      ************* *****************************************   **

consensus_7718#0      GCTGTTATTACTGTTGGGTATCACACCATACTGCGACTGCTGCACCATGCTCGCCGGCGC 467
consensus_7718#1      GCTGTTATTACTGT-GGGTA---------------------------------------- 263
                      ************** *****                                        

consensus_7718#0      ATCGGCGGTCGTGGGGCCCATCTGCTGCGGGAAGCCAAAATTGGCCTGCAGGCCGGCTTG 527
consensus_7718#1      ------------------------------------------------------------
                                                                                  

consensus_7718#0      CCCTAGGTGAGACTGCTGCTGGATGCCAGGAATTTGCTGCAAAGGGTGCGGGACTGGGAC 587
consensus_7718#1      ------------------------------------------------------------
                                                                                  

consensus_7718#0      GAATCCCTGCGGGATGCACTCCCTGGGTATCAGATGGCACAGTGCGTCTTCGGGGTGGCA 647
consensus_7718#1      ------------------------------------------------------------
                                                                                  

consensus_7718#0      AAGTCA 653
consensus_7718#1      ------