These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_772#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 697 fasta sequence [AACGTCGNTGGGACANCAAGAACGACCCTCCTATGGGNTGCGNTTCGTTCAACGCTCAGGGTCATCATCCTTGACCCACCCCGGCCAGGTCGGTGCTGGTTACGCCCCCGTTTTGGACTGCCACACTGCCCACATCGCCTGCAAGTTNTNTGAGATCCTTGAGAAGCTTGCCGCCGTACCGGCAAGTCCATCGAGTCCAACCCCAAGTTCATCAAGTCGGGTGACGCTGCCATCGTCAAGATGATTCCGTCCAAGCCCATGTGTGTCGAGACTTTCTCCGAGTACCCTCCCCTTGGTCGTTTCGCCGTCCGTGACATGCGTCAGACCGTCGCTGTCGGTGTCATCAAGAGCGTCGACAAGTCCCAGGGTACCCAGGGCAAGGTCACCAAGTCCGCTGCCAAGGCCGCCAAGAAATAAGCTGCTCAACCAACAGCAACATCTAATGTCGAGCCACGACAAGCAGGAAGCATGTCGTAGCATCTTGGGCACTTCCTCGTTCGCAACGAGGTTTCGGTCAATTTTGCTTTATCACAAAAGAGTACTCGGTTTTTATTGGGGCACATGATGAAATGACGGTTTGGGATTTCGTAACTCAAAAAAATTCTTGACATGTGCTTTAGTCTACATAGAGTCCTCAGAAGTGATCTCGGCGTTTGGTCATGACTTAAACGAAATTTCTTTTTTTCTAAAAAAAAAA] [+] EMBL AT003482 [AACGTCGNTGGGACANCAAGAACGACCCTCCTATGGGNTGCGNTTCGTTCAACGCTCAGGGTCATCATCCTTGACCCACCCCGGCCAGGTCGGTGCTGGTTACGCCCCCGTTTTGGACTGCCACACTGCCCACATCGCCTGCAAGTTNTNTGAGATCCTTGAGAAGCTTGCCGCCGTACCGGCAAGTCCATCGAGTCCAACCCCAAGTTCATCAAGTCGGGTGACGCTGCCATCGTCAAGATGATTCCGTCCAAGCCCATGTGTGTCGAGACTTTCTCCGAGTACCCTCCCCTTGGTCGTTTCGCCGTCCGTGACATGCGTCAGACCGTCGCTGTCGGTGTCATCAAGAGCGTCGACAAGTCCCAGGGTACCCAGGGCAAGGTCACCAAGTCCGCTGCCAAGGCCGCCAAGAAATAAGCTGCTCAACCAACAGCAACATCTAATGTCGAGCCACGACAAGCAGGAAGCATGTCGTAGCATCTTGGGCACTTCCTCGTTCGCAACGAGGTTTCGGTCAATTTTGCTTTATCACAAAAGAGTACTCGGTTTTTATTGGGGCACATGATGAAATGACGGTTTGGGATTTCGTAACTCAAAAAAATTCTTGACATGTGCTTTAGTCTACATAGAGTCCTCAGAAGTGATCTCGGCGTTTGGTCATGACTTAAACGAAATTTCTTTTTTTCTAAAAAAAAAA] consensusID : consensus_772#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 526 fasta sequence [GTTTTGGNNTGCCCCNCTGCCCNCATCGCCTGCAAGTTCTCTGAGATCCTTGAGAAGCTTGACCGCCGTACCGGCAAGTCCATCGAGTCCAACCCCAAGTTCATCAAGTCGGGTGACGCTGCCATCGTCAAGATGATTCCGTCCAAGCCCATGTGTGTCGAGACTTTCTCCGAGTACCCTCCCCTTGGTCGTTTCGCCGTCCGTGACATGCGTCAGACCGTCGCTGTCGGTGTCATCAAGAGCGTCGNCAAGTCCCAGGGTACCCAGGGCAAGGTCCCCAAGTCCGCTGCCAAGGCCGCCAAGAAATAAGCTGCTCAACCNACAGCAACATTTAATGTCGAGCCCCGNCAAGCAGGAAGCATGTCGTAGCATCTTGGGCACTTCCTCGTTCGCAACGAGGTTTCGGTCNATTTTGCTTTATCCCAAAAGAGTACTCGGTTTTTATTGGGGCCCATGATGAAATGACGGTTTGGGATTTCGTAACTCNAAAAAATTCTTGNCCTGTGGAAAAAAAAAAAAAAAAAAA] [+] EMBL AT003348 [GTTTTGGNNTGCCCCNCTGCCCNCATCGCCTGCAAGTTCTCTGAGATCCTTGAGAAGCTTGACCGCCGTACCGGCAAGTCCATCGAGTCCAACCCCAAGTTCATCAAGTCGGGTGACGCTGCCATCGTCAAGATGATTCCGTCCAAGCCCATGTGTGTCGAGACTTTCTCCGAGTACCCTCCCCTTGGTCGTTTCGCCGTCCGTGACATGCGTCAGACCGTCGCTGTCGGTGTCATCAAGAGCGTCGNCAAGTCCCAGGGTACCCAGGGCAAGGTCCCCAAGTCCGCTGCCAAGGCCGCCAAGAAATAAGCTGCTCAACCNACAGCAACATTTAATGTCGAGCCCCGNCAAGCAGGAAGCATGTCGTAGCATCTTGGGCACTTCCTCGTTCGCAACGAGGTTTCGGTCNATTTTGCTTTATCCCAAAAGAGTACTCGGTTTTTATTGGGGCCCATGATGAAATGACGGTTTGGGATTTCGTAACTCNAAAAAATTCTTGNCCTGTGGAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_772#0 AACGTCGNTGGGACANCAAGAACGACCCTCCTATGGGNTGCGNTTCGTTCAACGCTCAGG 60 consensus_772#1 ------------------------------------------------------------ consensus_772#0 GTCATCATCCTTGACCCACCCCGGCCAGGTCGGTGCTGGTTACGCCCCCGTTTTGGACTG 120 consensus_772#1 -------------------------------------------------GTTTTGGNNTG 11 ******* ** consensus_772#0 CCACACTGCCCACATCGCCTGCAAGTTNTNTGAGATCCTTGAGAAGCTTG-CCGCCGTAC 179 consensus_772#1 CCCCNCTGCCCNCATCGCCTGCAAGTTCTCTGAGATCCTTGAGAAGCTTGACCGCCGTAC 71 ** * ****** *************** * ******************** ********* consensus_772#0 CGGCAAGTCCATCGAGTCCAACCCCAAGTTCATCAAGTCGGGTGACGCTGCCATCGTCAA 239 consensus_772#1 CGGCAAGTCCATCGAGTCCAACCCCAAGTTCATCAAGTCGGGTGACGCTGCCATCGTCAA 131 ************************************************************ consensus_772#0 GATGATTCCGTCCAAGCCCATGTGTGTCGAGACTTTCTCCGAGTACCCTCCCCTTGGTCG 299 consensus_772#1 GATGATTCCGTCCAAGCCCATGTGTGTCGAGACTTTCTCCGAGTACCCTCCCCTTGGTCG 191 ************************************************************ consensus_772#0 TTTCGCCGTCCGTGACATGCGTCAGACCGTCGCTGTCGGTGTCATCAAGAGCGTCGACAA 359 consensus_772#1 TTTCGCCGTCCGTGACATGCGTCAGACCGTCGCTGTCGGTGTCATCAAGAGCGTCGNCAA 251 ******************************************************** *** consensus_772#0 GTCCCAGGGTACCCAGGGCAAGGTCACCAAGTCCGCTGCCAAGGCCGCCAAGAAATAAGC 419 consensus_772#1 GTCCCAGGGTACCCAGGGCAAGGTCCCCAAGTCCGCTGCCAAGGCCGCCAAGAAATAAGC 311 ************************* ********************************** consensus_772#0 TGCTCAACCAACAGCAACATCTAATGTCGAGCCACGACAAGCAGGAAGCATGTCGTAGCA 479 consensus_772#1 TGCTCAACCNACAGCAACATTTAATGTCGAGCCCCGNCAAGCAGGAAGCATGTCGTAGCA 371 ********* ********** ************ ** *********************** consensus_772#0 TCTTGGGCACTTCCTCGTTCGCAACGAGGTTTCGGTCAATTTTGCTTTATCACAAAAGAG 539 consensus_772#1 TCTTGGGCACTTCCTCGTTCGCAACGAGGTTTCGGTCNATTTTGCTTTATCCCAAAAGAG 431 ************************************* ************* ******** consensus_772#0 TACTCGGTTTTTATTGGGGCACATGATGAAATGACGGTTTGGGATTTCGTAACTCAAAAA 599 consensus_772#1 TACTCGGTTTTTATTGGGGCCCATGATGAAATGACGGTTTGGGATTTCGTAACTCNAAAA 491 ******************** ********************************** **** consensus_772#0 AATTCTTGACATGTGCTTTAGTCTACATAGAGTCCTCAGAAGTGATCTCGGCGTTTGGTC 659 consensus_772#1 AATTCTTGNCCTGTGGAAAAAAAAAAAAAAAAAAA------------------------- 526 ******** * **** * * * * * consensus_772#0 ATGACTTAAACGAAATTTCTTTTTTTCTAAAAAAAAAA 697 consensus_772#1 -------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||