These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7724#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1377 fasta sequence [GACTCCGACCGCCCGGCGCGCGCGCTGCTCCGGTCGTCCGCCGCGTACGTCGCGCTGTCCGCGGCGCTCCGGTCGGGGGGCGGCGCCGACGACCCGGCCTGCCACTGGCTCTACGATACGCTGCTGTCCCCGGACCCCGACCTCCGCCTCGCCGCGCTCGCGTTCCTCCCGCTCCTCTCGTCGCTCTACCTCCTCCGCCTGCCGCCCGCGCTCCCCTCCTCGCTCTCCGGCTTCGAGGCCGTCCTCCTCGCCGTCTACTCCTCCGAGGCCAAGAATCGCCAGGGCAAGCCCGTCCTTGTCCAGGTACCCGACCTCTCCGTCCCTTCCCTCTACCACACGCCGCTGTCCAGCCCCAGCTCGAAGTCCCCTCGCCGGCCACAGCCGCCGCCGATCCCCCCACCCGCGGGGAATGTTGTGGTCGGGGTGCTATCGCCGCCGCTTGAGCCACAGGCGGCGGTGAAGTCGACCAAGCGCGCGGGGATTATCGGAGTTGCCTTCGAGGCGTACTATGCCAAGATTTCGCAGATGCCGCCTGCATCGAAGGTGGATGCTTGCAACGCCGTGGCGGCGTGGGCGGGGCAGTACTGCAAGTGCCGATTTGAGCTTGATGAGAAGGAGTTGGAAGAGGAGGAGGCTGATTCATTGGGGTCCGTTTCGCCATTGTCATCGGAGGCCGAGAACGGGAAGGCCTTGGAGGAGGAAATGGCAAAGATGCGCGTCAACGGAGACACCAATGGTCGGAATTGTGGCGAGAGAGAGGGGAGGGTGCCACTTCCATGGGAGCTTCTACAGCCAGTGATGAGAGTTCTTGGTCACTGCCTGTTAGCTCCGCTGAATCCGACGGAGGTGCGGGATACCGCCGCAGAAGCTGTGCGGGTTGTCTATGCCCGCGCGTGTCATGAGCTTGTGCCACAGGCTATCTTGGCGTCCCGTAGCTTGATCGAGCTCGACAAAAGCGCACGCAAGGCTGCCAAGGAGGCAGCTGCAGCAGCTTCTGGGGCAATCGTGTCAGTAGGCACAGCTGGTAGCACCGCGTCGAGCTCTAGACCCAGCTCCAAGCCAAACACACCAGGCAAGCAGCGGAAGCCTGATGTACTGCTCCTGTCAAAATGATTCTGATTGCATTACATCTTGTAAGATTTTCTGCAGTGGTGATAAAAGAGTTCATTTTTCTCATGAGTTTGTCACTGGAATTTCATTGAAGTCTACTAAACCTTGCAATGCGTAAAGGTCGACTCTTGTGGCTTGGAAAAGCATTGGTTTAGTATGTAGCCAGTTCTGTATTGTAAGTTATCTTGTCTTATGTTATTGTTTTTGCATATAGCTGATGAATTAATATATTTCACATTTATGTGTGCGGTTGATGAAAAAAAGAAA] [+] EMBL CB653492 [GACTCCGACCGCCCGGCGCGCGCGCTGCTCCGGTCGTCCGCCGCGTACGTCGCGCTGTCCGCGGCGCTCCGGTCGGGGGGCGGCGCCGACGACCCGGCCTGCCACTGGCTCTACGATACGCTGCTGTCCCCGGACCCCGACCTCCGCCTCGCCGCGCTCGCGTTCCTCCCGCTCCTCTCGTCGCTCTACCTCCTCCGCCTGCCGCCCGCGCTCCCCTCCTCGCTCTCCGGCTTCGAGGCCGTCCTCCTCGCCGTCTACTCCTCCGAGGCCAAGAATCGCCAGGGCAAGCCCGTCCTTGTCCAGGTACCCGACCTCTCCGTCCCTTCCCTCTACCACACGCCGCTGTCCAGCCCCAGCTCGAAGTCCCCTCGCCGGCCACAGCCGCCGCCGATCCCCCCACCCGCGGGGAATGTTGTGGTCGGGGTGCTATCGCCGCCGCTTGAGCCACAGGCGGCGGTGAAGTCGACCAAGCGCGCGGGGATTATCGGAGTTGCCTTCGAGGCGTACTATGCCAAGATTTCGCAGATGCCGCCTGCATCGAAGGTGGATGCTTGCAACGCCGTGGCGGCGTGGGCGGGGCAGTACTGCAAGTGCCGATTTGAGCTTGATGAGAAGGAGTTGGAAGAGGAGGAGGCTGATTCATTGGGGTCCGTTTCGCCATTGTCATCGGAGGCCGAGAACGGGAAGGCCTTGGAGGAGGAAATGGCAAAGATGCGCGTCAACGGAGACACCAATGGTCGGAATTGTGGCGAGAGAGAGGGGAGGGTGCCACTTCCATGGGAG ] [-] EMBL CB675977 [ GCCGATTTGAGCTTGATGAGAAGGAGTTGGAAGAGGAGGAGGCTGATTCATTGGGGTCCGTTTCGCCATTGTCATCGGAGGCCGAGAACGGGAAGGCCTTGGAGGAGGAAATGGCAAAGATGCGCGTCAACGGAGACACCAATGGTCGGAATTGTGGCGAGAGAGAGGGGAGGGTGCCACTTCCATGGGAGCTTCTACAGCCAGTGATGAGAGTTCTTGGTCACTGCCTGTTAGCTCCGCTGAATCCGACGGAGGTGCGGGATACCGCCGCAGAAGCTGTGCGGGTTGTCTATGCCCGCGCGTGTCATGAGCTTGTGCCACAGGCTATCTTGGCGTCCCGTAGCTTGATCGAGCTCGACAAAAGCGCACGCAAGGCTGCCAAGGAGGCAGCTGCAGCAGCTTCTGGGGCAATCGTGTCAGTAGGCACAGCTGGTAGCACCGCGTCGAGCTCTAGACCCAGCTCCAAGCCAAACACACCAGGCAAGCAGCGGAAGCCTGATGTACTGCTCCTGTCAAAATGATTCTGATTGCATTACATCTTGTAAGATTTTCTGCAGTGGTGATAAAAGAGTTCATTTTTCTCATGAGTTTGTCACTGGAATTTCATTGAAGTCTACTAAACCTTGCAATGCGTAAAGGTCGACTCTTGTGGCTTGGAAAAGCATTGGTTTAGTATGTAGCCAGTTCTGTATTGTAAGTTATCTTGTCTTATGTTATTGTTTTTGCATATAGCTGATGAATTAATATATTTCACATTTATGTGTGCGGTTGA ] [-] EMBL CA762468 [ ggaCGAGACA AGGGGAGGGTGCCACTTCCATGGGAGCTTCTACAGCCAGTGATGAGAGTTCTTGGTCACTGCCTGTTAGCTCCGCTGAATCCGACGGAGGTGCGGGATACCGCCGCAGAAGCTGTGCGGGTTGTCTATGCCCGCGCGTGTCATGAGCTTGTGCCACAGGCTATCTTGGCATCCCGTAGCTTGATCGAGCTCGACAAAAGCGCACGCAAGGCTGCCAAGGAGGCAGCTGCAGCAGCTTCTGGGGCAATCGTGTCAGTAGGCACAGCTGGTAGCACCGCGTCGAGCTCTAGACCCAGCTCCAAGCCAAACACACCAGGCAAGCAGCGGAAGCCTGATGTACTGCTCCTGTCGAAATGATTCTGATTGCATTACATCTTGTAAGATTTTCTGCAGTGGTGATAAAAGAGTTCATTTTTCTCATGAGTTTGTCACTGGAATTTCATTGAAGTCTACTAAACCTTGCAATGCGTAAAGGTCGACTCTTGTGGCTTGGAAAAGCATTGGTTTAGTATGTAGCCAGTTCTGTATTGTAAGTTATCTTGTCTTATGTTATTGTTTTTGCATATAGCTGATGAATTAATATATTTCACATTTATGTGTGCGGTTGATGAAAAAAAGAAA] consensusID : consensus_7724#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 681 fasta sequence [AGGGGTGCCACTTCCATGGGAGCTTCTACAGCCAGTGATGAGAGTTCTTGGTCCCTGCCTGTAGCCTCCGCTGAATCCGACGGAGGTGCGGGATACCGCCGCAGAAGCTGTGCGGGTTGTCTATGCCCGCGCGTGTCATGAGCTTGTGCCACAGGCTATCTTGGCGTCCCGTAGCTTGATCGAGCTCGACAAAAGCGCACGCAAGGCTGCCAAGGAGGCAGCTGCAGCAGCTTCTGGGGCAATCGTGTCAGTAGGCACAGCTGGTAGCACCGCGTCGAGCTCTAGACCCAGCTCCAAGCCAAACACACCAGTGGTGATAAAAGAGTTCATTTTTCTCATGAGTTTGTCACTGGAATTTCATTGAAGTCTACTAAACCTTGCAATGCGTAAAGGTCGACTCTTGTGGCTTGGAAAAGCATTGGTTTAGTATGTAGCCAGTTCTGTATTGTAAGTTATCTTGTCTTATGTTATTGTTTTTGCATATAGCTGATGAATTAATATATTTCACATTTATGTGTGCGGTTGATGAAAAGAACATGGTGTAGTGTGCTATCTACTACTAGTAATGGATTTTAGCAGGCGATTATGTATTGACTTGTTTTATGCATTTCTTACCGAACATATATTAATTTGATGTTCCTTACTACAACTACTATCTTATGGAATTCTCAGCAAAAAAAA] [-] EMBL CA762469 [AGGGGTGCCACTTCCATGGGAGCTTCTACAGCCAGTGATGAGAGTTCTTGGTCCCTGCCTGTAGCCTCCGCTGAATCCGACGGAGGTGCGGGATACCGCCGCAGAAGCTGTGCGGGTTGTCTATGCCCGCGCGTGTCATGAGCTTGTGCCACAGGCTATCTTGGCGTCCCGTAGCTTGATCGAGCTCGACAAAAGCGCACGCAAGGCTGCCAAGGAGGCAGCTGCAGCAGCTTCTGGGGCAATCGTGTCAGTAGGCACAGCTGGTAGCACCGCGTCGAGCTCTAGACCCAGCTCCAAGCCAAACACACCAGTGGTGATAAAAGAGTTCATTTTTCTCATGAGTTTGTCACTGGAATTTCATTGAAGTCTACTAAACCTTGCAATGCGTAAAGGTCGACTCTTGTGGCTTGGAAAAGCATTGGTTTAGTATGTAGCCAGTTCTGTATTGTAAGTTATCTTGTCTTATGTTATTGTTTTTGCATATAGCTGATGAATTAATATATTTCACATTTATGTGTGCGGTTGATGAAAAGAACATGGTGTAGTGTGCTATCTACTACTAGTAATGGATTTTAGCAGGCGATTATGTATTGACTTGTTTTATGCATTTCTTACCGAACATATATTAATTTGATGTTCCTTACTACAACTACTATCTTATGGAATTCTCAGCAAAAAAAA] consensusID : consensus_7724#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 655 fasta sequence [CGTGCTCTCTGCTTCTTGACCTAGATCGCTCCATCCTGCCCGCCTCCTTTACATGGCGGCTTCCCCAACCACTGAATAGGGTATTTGGTCCCCACCCCGGTACCTCCCGCTACTTCCGACGAGGTACTGGGATCCCCCCGCAGAAGATGTACGGGTTGTCTATGCCCGCGCGTGTCATGAGCTTGTCCCACAGGCTATCTTTGCATCCCGTAGCTCGATCGAGCTTGACAAAAGCGCACGCAAGCGTGCCAAGGAGGCAGCTGCAGCAGCTTCTGGGGCAATCGTGTCAGTAGGCACAGCTGGTAGCTCCGCGTCGAGCTCTAGATTCAGCTCCGAGCCAAACACACCAGGCAAGCACCGGAAGCCGGATGTCCTGCTCCTGTTGAAATCATTCTGAAGGCATTACATCTTGTAAGATTTTCTGCAGTGGTGATAAAAGAGTTCATTTTTCTCATGAGTTCGTCACTGGAATTTCATTGGAGTCTACTAAACCTTGCAATGGGTAAAGGTCGACTCTTGTGGCTTGGAAAAGCATTGGTTTAGTATGTAGCCAGTTCTGTATTGTAAGTTATCATGTCTTATGTTATTGTTTTTGCATATAGCTGATGAATTAATATATTTCCCCATTATGTGTGCGGTTGATGAAAAAAAAAAA] [-] EMBL CA762467 [CGTGCTCTCTGCTTCTTGACCTAGATCGCTCCATCCTGCCCGCCTCCTTTACATGGCGGCTTCCCCAACCACTGAATAGGGTATTTGGTCCCCACCCCGGTACCTCCCGCTACTTCCGACGAGGTACTGGGATCCCCCCGCAGAAGATGTACGGGTTGTCTATGCCCGCGCGTGTCATGAGCTTGTCCCACAGGCTATCTTTGCATCCCGTAGCTCGATCGAGCTTGACAAAAGCGCACGCAAGCGTGCCAAGGAGGCAGCTGCAGCAGCTTCTGGGGCAATCGTGTCAGTAGGCACAGCTGGTAGCTCCGCGTCGAGCTCTAGATTCAGCTCCGAGCCAAACACACCAGGCAAGCACCGGAAGCCGGATGTCCTGCTCCTGTTGAAATCATTCTGAAGGCATTACATCTTGTAAGATTTTCTGCAGTGGTGATAAAAGAGTTCATTTTTCTCATGAGTTCGTCACTGGAATTTCATTGGAGTCTACTAAACCTTGCAATGGGTAAAGGTCGACTCTTGTGGCTTGGAAAAGCATTGGTTTAGTATGTAGCCAGTTCTGTATTGTAAGTTATCATGTCTTATGTTATTGTTTTTGCATATAGCTGATGAATTAATATATTTCCCCATTATGTGTGCGGTTGATGAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7724#0 GACTCCGACCGCCCGGCGCGCGCGCTGCTCCGGTCGTCCGCCGCGTACGTCGCGCTGTCC 60 consensus_7724#2 ------------------------------------------------------------ consensus_7724#1 ------------------------------------------------------------ consensus_7724#0 GCGGCGCTCCGGTCGGGGGGCGGCGCCGACGACCCGGCCTGCCACTGGCTCTACGATACG 120 consensus_7724#2 ------------------------------------------------------------ consensus_7724#1 ------------------------------------------------------------ consensus_7724#0 CTGCTGTCCCCGGACCCCGACCTCCGCCTCGCCGCGCTCGCGTTCCTCCCGCTCCTCTCG 180 consensus_7724#2 ------------------------------------------------------------ consensus_7724#1 ------------------------------------------------------------ consensus_7724#0 TCGCTCTACCTCCTCCGCCTGCCGCCCGCGCTCCCCTCCTCGCTCTCCGGCTTCGAGGCC 240 consensus_7724#2 ------------------------------------------------------------ consensus_7724#1 ------------------------------------------------------------ consensus_7724#0 GTCCTCCTCGCCGTCTACTCCTCCGAGGCCAAGAATCGCCAGGGCAAGCCCGTCCTTGTC 300 consensus_7724#2 ------------------------------------------------------------ consensus_7724#1 ------------------------------------------------------------ consensus_7724#0 CAGGTACCCGACCTCTCCGTCCCTTCCCTCTACCACACGCCGCTGTCCAGCCCCAGCTCG 360 consensus_7724#2 ------------------------------------------------------------ consensus_7724#1 ------------------------------------------------------------ consensus_7724#0 AAGTCCCCTCGCCGGCCACAGCCGCCGCCGATCCCCCCACCCGCGGGGAATGTTGTGGTC 420 consensus_7724#2 ------------------------------------------------------------ consensus_7724#1 ------------------------------------------------------------ consensus_7724#0 GGGGTGCTATCGCCGCCGCTTGAGCCACAGGCGGCGGTGAAGTCGACCAAGCGCGCGGGG 480 consensus_7724#2 ------------------------------------------------------------ consensus_7724#1 ------------------------------------------------------------ consensus_7724#0 ATTATCGGAGTTGCCTTCGAGGCGTACTATGCCAAGATTTCGCAGATGCCGCCTGCATCG 540 consensus_7724#2 ------------------------------------------------------------ consensus_7724#1 ------------------------------------------------------------ consensus_7724#0 AAGGTGGATGCTTGCAACGCCGTGGCGGCGTGGGCGGGGCAGTACTGCAAGTGCCGATTT 600 consensus_7724#2 ------------------------------------------------------------ consensus_7724#1 ------------------------------------------------------------ consensus_7724#0 GAGCTTGATGAGAAGGAGTTGGAAGAGGAGGAGGCTGATTCATTGGGGTCCGTTTCGCCA 660 consensus_7724#2 ------------------------------------------------------------ consensus_7724#1 ------------------------------------------------------------ consensus_7724#0 TTGTCATCGGAGGCCGAGAACGGGAAGGCCTTGGAGGAGGAAATGGCAAAGATGCGCGTC 720 consensus_7724#2 ------------------------------------------------------------ consensus_7724#1 ------------------------------------------------------------ consensus_7724#0 AACGGAGACACCAATGGTCGGAATTGTGGCGAGAGAGAGGGGAGGGTGCCACTTCCATGG 780 consensus_7724#2 --CGTGCTCTCTGCTTCTTG-ACCTAGATCGCTCCATCCTGCCCGCCTCC-TTTACATGG 56 consensus_7724#1 -----------------------------------------AGGGGTGCCACTTCCATGG 19 * ** ** ***** consensus_7724#0 GAGCTTCTACAGCCAGTGATGAGAGTTCTTGGTCACTGCCT-GTTAGCTCC-GCTGAATC 838 consensus_7724#2 CGGCTTCCCCAACCACTGAATAGGGTATTTGGTCCCCACCCCGGTACCTCCCGCTACTTC 116 consensus_7724#1 GAGCTTCTACAGCCAGTGATGAGAGTTCTTGGTCCCTGCCT--GTAGCCTCCGCTGAATC 77 ***** ** *** *** ** ** ****** * ** ** * * *** ** consensus_7724#0 CGACGGAGGTGCGGGATACCGCCGCAGAAGCTGTGCGGGTTGTCTATGCCCGCGCGTGTC 898 consensus_7724#2 CGACGAGGTACTGGGATCCCCCCGCAGAAGATGTACGGGTTGTCTATGCCCGCGCGTGTC 176 consensus_7724#1 CGACGGAGGTGCGGGATACCGCCGCAGAAGCTGTGCGGGTTGTCTATGCCCGCGCGTGTC 137 ***** * ***** ** ********* *** ************************* consensus_7724#0 ATGAGCTTGTGCCACAGGCTATCTTGGCGTCCCGTAGCTTGATCGAGCTCGACAAAAGCG 958 consensus_7724#2 ATGAGCTTGTCCCACAGGCTATCTTTGCATCCCGTAGCTCGATCGAGCTTGACAAAAGCG 236 consensus_7724#1 ATGAGCTTGTGCCACAGGCTATCTTGGCGTCCCGTAGCTTGATCGAGCTCGACAAAAGCG 197 ********** ************** ** ********** ********* ********** consensus_7724#0 CACGCAAGGCTGCCAAGGAGGCAGCTGCAGCAGCTTCTGGGGCAATCGTGTCAGTAGGCA 1018 consensus_7724#2 CACGCAAGCGTGCCAAGGAGGCAGCTGCAGCAGCTTCTGGGGCAATCGTGTCAGTAGGCA 296 consensus_7724#1 CACGCAAGGCTGCCAAGGAGGCAGCTGCAGCAGCTTCTGGGGCAATCGTGTCAGTAGGCA 257 ******** ************************************************** consensus_7724#0 CAGCTGGTAGCACCGCGTCGAGCTCTAGACCCAGCTCCAAGCCAAACACACCAGGCAAGC 1078 consensus_7724#2 CAGCTGGTAGCTCCGCGTCGAGCTCTAGATTCAGCTCCGAGCCAAACACACCAGGCAAGC 356 consensus_7724#1 CAGCTGGTAGCACCGCGTCGAGCTCTAGACCCAGCTCCAAGCCAAACACACCAG------ 311 *********** ***************** ******* *************** consensus_7724#0 AGCGGAAGCCTGATGTACTGCTCCTGTCAAAATGATTCTGATTGCATTACATCTTGTAAG 1138 consensus_7724#2 ACCGGAAGCCGGATGTCCTGCTCCTGTTGAAATCATTCTGAAGGCATTACATCTTGTAAG 416 consensus_7724#1 ------------------------------------------------------------ consensus_7724#0 ATTTTCTGCAGTGGTGATAAAAGAGTTCATTTTTCTCATGAGTTTGTCACTGGAATTTCA 1198 consensus_7724#2 ATTTTCTGCAGTGGTGATAAAAGAGTTCATTTTTCTCATGAGTTCGTCACTGGAATTTCA 476 consensus_7724#1 -----------TGGTGATAAAAGAGTTCATTTTTCTCATGAGTTTGTCACTGGAATTTCA 360 ********************************* *************** consensus_7724#0 TTGAAGTCTACTAAACCTTGCAATGCGTAAAGGTCGACTCTTGTGGCTTGGAAAAGCATT 1258 consensus_7724#2 TTGGAGTCTACTAAACCTTGCAATGGGTAAAGGTCGACTCTTGTGGCTTGGAAAAGCATT 536 consensus_7724#1 TTGAAGTCTACTAAACCTTGCAATGCGTAAAGGTCGACTCTTGTGGCTTGGAAAAGCATT 420 *** ********************* ********************************** consensus_7724#0 GGTTTAGTATGTAGCCAGTTCTGTATTGTAAGTTATCTTGTCTTATGTTATTGTTTTTGC 1318 consensus_7724#2 GGTTTAGTATGTAGCCAGTTCTGTATTGTAAGTTATCATGTCTTATGTTATTGTTTTTGC 596 consensus_7724#1 GGTTTAGTATGTAGCCAGTTCTGTATTGTAAGTTATCTTGTCTTATGTTATTGTTTTTGC 480 ************************************* ********************** consensus_7724#0 ATATAGCTGATGAATTAATATATTTCACATTTATGTGTGCGGTTGATGAAAAAAAGAAA- 1377 consensus_7724#2 ATATAGCTGATGAATTAATATATTTCCCCATTATGTGTGCGGTTGATGAAAAAAAAAAA- 655 consensus_7724#1 ATATAGCTGATGAATTAATATATTTCACATTTATGTGTGCGGTTGATGAAAAGAACATGG 540 ************************** * ********************** ** * consensus_7724#0 ------------------------------------------------------------ consensus_7724#2 ------------------------------------------------------------ consensus_7724#1 TGTAGTGTGCTATCTACTACTAGTAATGGATTTTAGCAGGCGATTATGTATTGACTTGTT 600 consensus_7724#0 ------------------------------------------------------------ consensus_7724#2 ------------------------------------------------------------ consensus_7724#1 TTATGCATTTCTTACCGAACATATATTAATTTGATGTTCCTTACTACAACTACTATCTTA 660 consensus_7724#0 --------------------- consensus_7724#2 --------------------- consensus_7724#1 TGGAATTCTCAGCAAAAAAAA 681 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||