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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7734#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1075 fasta sequence
[CTGTCGGGGAAGAGCCGAAGAGGGTGAGGAAAGGATGGCTTCCCCCTTGCGACGACTGCGATCATGGCGGGTTTCTCGCGGCGCCACCTCGCCGTGTTCTACGTCGGCGGCGTCAATGGCAGCGGCCAGGACAACCAACACCCTCCACCGCCTTCTACCCCTTGCCCGCGCCGTCCACTCGTCGCTGCCGCCGAGCAGGTACGGCGATCCCCGTTCGCCTCCGCAGGCCCGTCGTCCCAGCGGCGAAGTTGAGCTCTCTAAACTGGAAAAGACGCCCTCTGACCGTTTCGACGAGATCGAAGCTGCCATTCATGCCAATCTCGTCAACGACATTGAGGCCTACAAATCAAGCCTTATGGCAGACCATGGTTTCTTTGAAAGAATGCTTACCTCTATGGGGATAAAAAAGAGTTACACTCGTGACCAAACTCTATGGTTGTGCAAGCTGATTCTCATCTTCTTTGCCTCAGGGTCTGTTGGGATTGGATTTGCCAAGATCGATGACCGTCTGAAACAGGCTCCATCAAATGCTTTATAACTGA-GCAACAAACATGT-CTGTTGTTTGGCCTGCTTAAAATTAAGCTGTTGATCACCTCGCAACCTATTCTGCATTTATCGGCCTGCCCTCGACGAGGTTGAACTCGATTTATCAGTGCTGTAGATTGTCTGCTGGGATGGTGTACGTGTGCACGGGCGTCTGCTCGATGTGGAAACCGATGGTGGCCGTTCAGAGCTTGGCGAGGGCGGTGAGGGCATTGGAGCATGTAGGCCGGAGAGGATGAGGTGAGACAGCGGCGCTGGATCCATGGTGGGTAACAAGAGGCACCAGCGACAACCTGGGCAGCCTTGCACCGTTGTGCTTCAGAGCTCCATCAGGAACTATTTCTTTTACTCATAGTAAATCTTTTGTTTTTGTTTAGGGCAGTCAAGTCGGGCTTTTTTATGTTTGTGTTTAGATAATTGAACATCTACTTTGACCGACATTACTACTGCAGTATTGCAGCTTATTACCAGATCATGCTCACGGGTTAAATTTCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGC]
[+] EMBL AK068043 [CTGTCGGGGAAGAGCCGAAGAGGGTGAGGAAAGGATGGCTTCCCCCTTGCGACGACTGCGATCATGGCGGGTTTCTCGCGGCGCCACCTCGCCGTGTTCTACGTCGGCGGCGTCAATGGCAGCGGCCAGGACAACCAACACCCTCCACCGCCTTCTACCCCTTGCCCGCGCCGTCCACTCGTCGCTGCCGCCGAGCAGGTACGGCGATCCCCGTTCGCCTCCGCAGGCCCGTCGTCCCAGCGGCGAAGTTGAGCTCTCTAAACTGGAAAAGACGCCCTCTGACCGTTTCGACGAGATCGAAGCTGCCATTCATGCCAATCTCGTCAACGACATTGAGGCCTACAAATCAAGCCTTATGGCAGACCATGGTTTCTTTGAAAGAATGCTTACCTCTATGGGGATAAAAAAGAGTTACACTCGTGACCAAACTCTATGGTTGTGCAAGCTGATTCTCATCTTCTTTGCCTCAGGGTCTGTTGGGATTGGATTTGCCAAGATCGATGACCGTCTGAAACAGGCTCCATCAAATGCTTTATAACTGA GCAACAAACATGT CTGTTGTTTGGCCTGCTTAAAATTAAGCTGTTGATCACCTCGCAACCTATTCTGCATTTATCGGCCTGCCCTCGACGAGGTTGAACTCGATTTATCAGTGCTGTAGATTGTCTGCTGGGATGGTGTACGTGTGCACGGGCGTCTGCTCGGTGTGGAAACCGATGGTGGCCGTTCAGAGCTTGGCGAGGGCGGTGAGGGCATTGGAGCATGTAGGCCGGAGAGGATGAGGTGAGACAGCGGCGCTGGATCCATGGTGGGTAACAAGAGGCACCAGCGACAACCTGGGCAGCCTTGCACCGTTGTGCTTCAGAGCTCCATCAGGAACTATTTCTTTTACTCATAGTAAATCTTTTGTTTTTGTTTAGGGCAGTCAAGTCGGGCTTTTTTATGTTTGTGTTTAGATAATTGAACATCTACTTTGACCGACATTACTACTGCAGTATTGCAGCTTATTACCAGATCATGCTCACGGGTTAAAT ]
[+] EMBL CF333661 [ TGAGGAAAGGATGGCTTCCCCCTTGCGACGACTGCGATCATGGCGGGTTTCTCGCGGCGCCACCTCGCCGTGTTCTACGTCGGCGGCGTCAATGGCAGCGGCCAGGACAACCAACACCCTCCACCGCCTTCTACCCCTTGCCCGCGCCGTCCACTCGTCGCTGCCGCCGAGCAGGTACGGCGATCCCCGTTCGCCTCCGCAGGCCCGTCGTCCCAGCGGCGAAGTTGAGCTCTCTAAACTGGAAAAGACGCCCTCTGACCGTTTCGACGAGATCGAAGCTGCCATTCATGCCAATCTCGTCAACGACATTGAGGCCTACAAATCAAGCCTTATGGCAGACCATGGTTTCTTTGAAAGAATGCTTACCTCTATGGGGATAAAAAAGAGTTACACTCGTGACCAAACTCTATGGTTGTGCAAGCTGATTCTCATCTTCTTTGCCTCAGGGTCTGTTGGGATTGGATTTGCCAAGATCGATGACCGTCTG AACAGGCTC ]
[-] EMBL CF333660 [ TTACACTCGTGACCAAACTCTATGG TGTGCAAGCTGATTCTCATCTTCTTTGCCTCAGGGTCTGTTGGGATTGGATTTGCCAAGATCGATGACCGTCTGAAACAGGCTCCATCAAATGCTTTATAACTGACGCAACAAACATGTNCTGTTGTTTGGCCTGCTTAAAATTAAGCTGTTGATCACCTCGCAACCTATTCTGCATTTATCGGCCTGCCCTCGACGAGGTTGAACTCGATTTATCAGTGCTGTAGATTGTCTGCTGGGATGGTGTACGTGTGCACGGGCGTCTGCTCGATGTGGAAACCGATGGTGGCCGTTCAGAGCTTGGCGAGGGCGGTGAGGGCATTGGAGCATGTAGGCCGGAGAGGATGAGGTGAGACAGCGGCGCTGGATCCATGGTGGGTAACAAGAGGCACCAGCGACAACCTGGGCAGCCTTGCACCGTTGTGCTTCAGAGCTCCATCAGGAACTATTTCTTTTACTCATAGTAAATCTTTTGTTTTTGTTTAGGGCAGTCAAGTCGGGCTTTTTTATGTTTGTGTTTAGATAATTGAACATCTACTTTGACCGACATTACTACTGCAGTATTGCAGCTTATTACCAaaaaa ]
[-] EMBL CF325347 [ CTGCTTAAAATTAAGCTGTTGATCACCTCGCAACCTATTCTGCATTTATCGGCCTGCCCTCGACGAGGTTGAACTCGATTTATCAGTGCTGTAGATTGTCTGCTGGGATGGTGTACGTGTGCACGGGCGTCTGCTCGATGTGGAAACCGATGGTGGCCGTTCAAAGCTTGGCGAGGGCGGTGAGGGCATTGGAGCATGTAGGCCGGAAAGGATGAGGTGAGACAGCGGCGCTGGATCCATGGTGGGTAACAAGAGGCACCAGCGACAACCTGGGCAGCCTTGCACCGTTGTGCTTCAGAGCTCCATCAGGAACTATTTCTTTTACTCATAGTAAATCTTTTGTTTTTGTTTAGGGCAGTCAAGTCGGGCTTTTTTATGTTTGTGTTTAGATAATTGAACATCTACTTTGACCGACATTACTACTGCAGTATTGCAGCTTATTACCAGATCATGCTCACGGGTTAAATTTCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGC]
consensusID : consensus_7734#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 689 fasta sequence
[GAGACCGAAGANGGTGAGGAAAGGATGGCTTCCCCCTTGCGACGACTGCGATCATGGCGGGTTTCTCGCGGCGCCACCTCGCCGTGTTCTACGTCGGCGGCGTCAATGGCAGCGGCCANGACAACCANCACCCTCCACCGCCTTCTACCCCTTGCCCGCGCCGTCCACTCGTCNCTGCCGCCGANCAGGTNCGGCGATCCCCGTTCGCCTCCGCAGGNCCGTCGTCCCANCGGCGAANTTGAGCTCTCTAAACTGGAAAAGACCCCTCTGACCGTTTCGACGANATCGAANCTGCCATTCNTGCCAATCTCGTCNACGACATTGAGGCCTACAAATCAAGCCTTATGGCAGACCATGGTTTCTTTGAAAGAATGCTTACCTCTATGGGGATAAAAAAGANTTACACTCNTGACCAAACTCTATGGTTGTGCNAGCTGATTCTCATCTTCTTTGCCTCANGGTCTGTTGGGATTGGATTTGCCCANATCNATGAACGTCTGAAACAGGCTCCATCNAATGCTTTATAACTGANCAACCAACATGTNTGTTGTTTGGCCTGCTTAAAATTAAACTGTTGATCCCTCNCCACCTATCTGCNTTTATCGGCCTGCCCCCAACAAAGTTGAACTCCATTTATCCNTTGCTGTTNANTTGTCTGCCNGGGATTGGTTTACTTTTTTCNCNGGGCT]
[+] EMBL BE229788 [GAGACCGAAGANGGTGAGGAAAGGATGGCTTCCCCCTTGCGACGACTGCGATCATGGCGGGTTTCTCGCGGCGCCACCTCGCCGTGTTCTACGTCGGCGGCGTCAATGGCAGCGGCCANGACAACCANCACCCTCCACCGCCTTCTACCCCTTGCCCGCGCCGTCCACTCGTCNCTGCCGCCGANCAGGTNCGGCGATCCCCGTTCGCCTCCGCAGGNCCGTCGTCCCANCGGCGAANTTGAGCTCTCTAAACTGGAAAAGACCCCTCTGACCGTTTCGACGANATCGAANCTGCCATTCNTGCCAATCTCGTCNACGACATTGAGGCCTACAAATCAAGCCTTATGGCAGACCATGGTTTCTTTGAAAGAATGCTTACCTCTATGGGGATAAAAAAGANTTACACTCNTGACCAAACTCTATGGTTGTGCNAGCTGATTCTCATCTTCTTTGCCTCANGGTCTGTTGGGATTGGATTTGCCCANATCNATGAACGTCTGAAACAGGCTCCATCNAATGCTTTATAACTGANCAACCAACATGTNTGTTGTTTGGCCTGCTTAAAATTAAACTGTTGATCCCTCNCCACCTATCTGCNTTTATCGGCCTGCCCCCAACAAAGTTGAACTCCATTTATCCNTTGCTGTTNANTTGTCTGCCNGGGATTGGTTTACTTTTTTCNCNGGGCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7734#0 CTGTCGGGGAAGAGCCGAAGAGGGTGAGGAAAGGATGGCTTCCCCCTTGCGACGACTGCG 60
consensus_7734#1 ----------GAGACCGAAGANGGTGAGGAAAGGATGGCTTCCCCCTTGCGACGACTGCG 50
******* **************************************
consensus_7734#0 ATCATGGCGGGTTTCTCGCGGCGCCACCTCGCCGTGTTCTACGTCGGCGGCGTCAATGGC 120
consensus_7734#1 ATCATGGCGGGTTTCTCGCGGCGCCACCTCGCCGTGTTCTACGTCGGCGGCGTCAATGGC 110
************************************************************
consensus_7734#0 AGCGGCCAGGACAACCAACACCCTCCACCGCCTTCTACCCCTTGCCCGCGCCGTCCACTC 180
consensus_7734#1 AGCGGCCANGACAACCANCACCCTCCACCGCCTTCTACCCCTTGCCCGCGCCGTCCACTC 170
******** ******** ******************************************
consensus_7734#0 GTCGCTGCCGCCGAGCAGGTACGGCGATCCCCGTTCGCCTCCGCAGGCCCGTCGTCCCAG 240
consensus_7734#1 GTCNCTGCCGCCGANCAGGTNCGGCGATCCCCGTTCGCCTCCGCAGGNCCGTCGTCCCAN 230
*** ********** ***** ************************** ***********
consensus_7734#0 CGGCGAAGTTGAGCTCTCTAAACTGGAAAAGACGCCCTCTGACCGTTTCGACGAGATCGA 300
consensus_7734#1 CGGCGAANTTGAGCTCTCTAAACTGGAAAAGAC-CCCTCTGACCGTTTCGACGANATCGA 289
******* ************************* ******************** *****
consensus_7734#0 AGCTGCCATTCATGCCAATCTCGTCAACGACATTGAGGCCTACAAATCAAGCCTTATGGC 360
consensus_7734#1 ANCTGCCATTCNTGCCAATCTCGTCNACGACATTGAGGCCTACAAATCAAGCCTTATGGC 349
* ********* ************* **********************************
consensus_7734#0 AGACCATGGTTTCTTTGAAAGAATGCTTACCTCTATGGGGATAAAAAAGAGTTACACTCG 420
consensus_7734#1 AGACCATGGTTTCTTTGAAAGAATGCTTACCTCTATGGGGATAAAAAAGANTTACACTCN 409
************************************************** ********
consensus_7734#0 TGACCAAACTCTATGGTTGTGCAAGCTGATTCTCATCTTCTTTGCCTCAGGGTCTGTTGG 480
consensus_7734#1 TGACCAAACTCTATGGTTGTGCNAGCTGATTCTCATCTTCTTTGCCTCANGGTCTGTTGG 469
********************** ************************** **********
consensus_7734#0 GATTGGATTTGCCAAGATCGATGACCGTCTGAAACAGGCTCCATCAAATGCTTTATAACT 540
consensus_7734#1 GATTGGATTTGCCCANATCNATGAACGTCTGAAACAGGCTCCATCNAATGCTTTATAACT 529
************* * *** **** ******************** **************
consensus_7734#0 GAGCAACAAACATGTCTGTTGTTTGGCCTGCTTAAAATTAAGCTGTTGATCACCTCGCAA 600
consensus_7734#1 GANCAACCAACATGTNTGTTGTTTGGCCTGCTTAAAATTAAACTGTTGATC-CCTCNCCA 588
** **** ******* ************************* ********* **** * *
consensus_7734#0 CCTATTCTGCATTTATCGGCCTGCCCTCGACGAGGTTGAACTCGATTTATCAGT-GCTGT 659
consensus_7734#1 CCTAT-CTGCNTTTATCGGCCTGCCCCCAACAAAGTTGAACTCCATTTATCCNTTGCTGT 647
***** **** *************** * ** * ********* ******* * *****
consensus_7734#0 -AGATTGTCTGCTGGGA--TGGTGTACGTGTGCACGGGCGTCTGCTCGATGTGGAAACCG 716
consensus_7734#1 TNANTTGTCTGCCNGGGATTGGTTTACTTTTTTCNCNGGGCT------------------ 689
******** ** **** *** * * * *
consensus_7734#0 ATGGTGGCCGTTCAGAGCTTGGCGAGGGCGGTGAGGGCATTGGAGCATGTAGGCCGGAGA 776
consensus_7734#1 ------------------------------------------------------------
consensus_7734#0 GGATGAGGTGAGACAGCGGCGCTGGATCCATGGTGGGTAACAAGAGGCACCAGCGACAAC 836
consensus_7734#1 ------------------------------------------------------------
consensus_7734#0 CTGGGCAGCCTTGCACCGTTGTGCTTCAGAGCTCCATCAGGAACTATTTCTTTTACTCAT 896
consensus_7734#1 ------------------------------------------------------------
consensus_7734#0 AGTAAATCTTTTGTTTTTGTTTAGGGCAGTCAAGTCGGGCTTTTTTATGTTTGTGTTTAG 956
consensus_7734#1 ------------------------------------------------------------
consensus_7734#0 ATAATTGAACATCTACTTTGACCGACATTACTACTGCAGTATTGCAGCTTATTACCAGAT 1016
consensus_7734#1 ------------------------------------------------------------
consensus_7734#0 CATGCTCACGGGTTAAATTTCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGC 1075
consensus_7734#1 -----------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||