These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7735#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1275 fasta sequence [CTACTACTACTACGGCTCAACTCCACTTGCTGTTGTTGATTCTCCTCCTCCTCCTCATCTCATCTCCCGAAATACTAATCCAGCTCGATCGTGTGGGAAAGAGATCACAGAGGGTACTTGGCTAGCTCACTCCATCAATCGATCGATCGGTACAGTTTAGCAACAGTTAAGCTTCACCTTTTTGTATTAGCTAGTGGCAGTCGCTACTACGTCCACGTCCTTTTGTGTTACGGATTGGTTCGCGAGCGAGATAACTGCGTGTTGTTCTAAGTTCTAGTAAGTTGGGGGGAGGCCATGGGGGTGCACACGAAGTCGATGAGCTGGTACATGGGGACGCCGGCCTCGCCGTCGCCGGGGAGCGCCGGGGAGGCGCAGCACGCACTGAGCAGCGGCGGGGGAGGGGGCAGCGACGCCAGCTTCGACACCAACATGGTGATCATCCTCGCGGCGCTGCTCTTCGCGCTGCTGTTCGCGCTCGGGCTCAACTCGCTCGCGCGGCTCATCATCCGGTGGGCGCGGCGGGCGGCGACGGGGGAAGGCGCCGGCGGCGGCGTGGAGGGGGCGGGCGCCGGCGGCGGGCTCAAAAAGCGCGCGCTCAGGAGCATCCCCATCAAGGTGTACGGCGGAGGTGGTGGAGGGAGCCCCGCCGCCGCGGCGGAGGTCTGCGCCATCTGCCTCGGCGAGTTCGCGGACGGCGAGAAGGTGCGCGTGCTGCCGCGCTGCGGCCATGGCTTCCACGTCCGCTGCGTCGACACGTGGCTCGTCTCCCACGACTCCTGCCCCACGTGCCGGGGCTCCGTCCTCCACGACGCCACCACCAAGCACAAACCAACCGCCGCCGCCGCCGCCGCGGGCAGCCGGCGGCCGGGGAGCGAGGTCGACGCCCCCGCCGCCGCCGCCGTGACGGTGGTCATCGCGTGACCGGGGCAGGTGGGCCCCCGCTTCCCCCAGCCGCTGTGGGCCCAGTGTAACATACCCATGTAAAAAATCTCCTTTCTTGTTTTGGACCTATGTAAAAAAATCTCTCCTTGGGCCAGGCCATGGCCCATGGCCGTGAGATATTTTCCGACGTTGGTGCTGTGAGAGGATGACGGGTGGGCCCGCTCGTCTGTTCAGTTTGTAGGTTACTCACAGTAGTCCACCGTCCATTCGATTTCGATCTTGGCTAGCAAGGGCAGTTGTTGTGGAGGTTAGGAGGTACAGGACGCTTACAGTTACGTACAGGCTTGTAATATTACCGTATAAGTAGTATCATTTTGCGAGGAAATACCGTAT] [+] EMBL AK065060 [CTACTACTACTACGGCTCAACTCCACTTGCTGTTGTTGATTCTCCTCCTCCTCCTCATCTCATCTCCCGAAATACTAATCCAGCTCGATCGTGTGGGAAAGAGATCACAGAGGGTACTTGGCTAGCTCACTCCATCAATCGATCGATCGGTACAGTTTAGCAACAGTTAAGCTTCACCTTTTTGTATTAGCTAGTGGCAGTCGCTACTACGTCCACGTCCTTTTGTGTTACGGATTGGTTCGCGAGCGAGATAACTGCGTGTTGTTCTAAGTTCTAGTAAGTTGGGGGGAGGCCATGGGGGTGCACACGAAGTCGATGAGCTGGTACATGGGGACGCCGGCCTCGCCGTCGCCGGGGAGCGCCGGGGAGGCGCAGCACGCACTGAGCAGCGGCGGGGGAGGGGGCAGCGACGCCAGCTTCGACACCAACATGGTGATCATCCTCGCGGCGCTGCTCTTCGCGCTGCTGTTCGCGCTCGGGCTCAACTCGCTCGCGCGGCTCATCATCCGGTGGGCGCGGCGGGCGGCGACGGGGGAAGGCGCCGGCGGCGGCGTGGAGGGGGCGGGCGCCGGCGGCGGGCTCAAAAAGCGCGCGCTCAGGAGCATCCCCATCAAGGTGTACGGCGGAGGTGGTGGAGGGAGCCCCGCCGCCGCGGCGGAGGTCTGCGCCATCTGCCTCGGCGAGTTCGCGGACGGCGAGAAGGTGCGCGTGCTGCCGCGCTGCGGCCATGGCTTCCACGTCCGCTGCGTCGACACGTGGCTCGTCTCCCACGACTCCTGCCCCACGTGCCGGGGCTCCGTCCTCCACGACGCCACCACCAAGCACAAACCAACCGCCGCCGCCGCCGCCGCGGGCAGCCGGCGGCCGGGGAGCGAGGTCGACGCCCCCGCCGCCGCCGCCGTGACGGTGGTCATCGCGTGACCGGGGCAGGTGGGCCCCCGCTTCCCCCAGCCGCTGTGGGCCCAGTGTAACATACCCATGTAAAAAATCTCCTTTCTTGTTTTGGACCTATGTAAAAAAATCTCTCCTTGGGCCAGGCCATGGCCCATGGCCGTGAGATATTTTCCGACGTTGGTGCTGTGAGAGGATGACGGGTGGGCCCGCTCGTCTGTTCAGTTTGTAGGTTACTCACAGTAGTCCACCGTCCATTCGATTTCGATCTTGGCTAGCAAGGGCAGTTGTTGTGGAGGTTAGGAGGTACAGGACGCTTACAGTTACGTACAGGCTTGTAATATTACCGTATAAGTAGTATCATTTTGCGAGGAAATACCGTAT] consensusID : consensus_7735#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 869 fasta sequence [TATCTACCTGGAGTTAGTGTAGGTGAGAGGTTAGGTCGATCATGGCGAGTGGTGTTGCGGCGCCGGCGCCGAGCGTGTTCGAGGCGGCGCGGCCGGCGTTGGAGAGCGGTGGCGGCGGTGGAGGCGCGCCGCCGCCGGGGAGGGCGGACGCGAGCTTCGACACCAACATGGTGATCATCCTGGCGGCGCTCTTCTTCGCGCTGCTGTTCGCCATCGGGCTCAACTCGCTGGCGCGGTGCGCGCTCCGGTGCGGGGGCCGGGGCGCGGCCGCCGCAGGCGGCGGCGGCGGCGGAGGAGGAGGAGGAGCGGCGGCGGCCGGGGTGGGGTGCGGCGGCATCAAGAAGCGCGCGCTGAGGAGCATCCCGGTGGAGGTGTACTGCGGCGGGGAGGAGACGGCGGAGACCGACGTGTGCGCCATCTGCCTCGGCGAGTTCGCGGACGGCGAGAAGGTGCGCGTGCTGCCGCGGTGCCGGCACGGGTTCCACGTCCGGTGCGTCGACGCCTGGCTGGTCTCGCACGGCTCCTGCCCGACGTGCCGCCGCCAGGTGATCGGCGGCGGCGGGAGCACGCCGCCGCCGGACAGCGACACCATCGCCGTGGTCGTAGCATGATGTGAGAGACAAAAGATATACTACTCCAGTAGTCTTCGTAGCTAGCTGGGCTCCTGCCTGGCCTCTTTGGCGCCAATCCCTTCTAAAAAATATCTCGCTGATCGATCTGATCTCTCCGGATATTTTCCGGCGAACGGCTAGTGACTAGTGACTCATCAGCTTGTTGTGGCGAATGTATTGACGGGTGCCCAATTGGCCCAAATTGGTCACTGTATATACACGTTCAACATCGCCGTCCCGAAATGTACTGTACCACTA] [+] EMBL AK111029 [TATCTACCTGGAGTTAGTGTAGGTGAGAGGTTAGGTCGATCATGGCGAGTGGTGTTGCGGCGCCGGCGCCGAGCGTGTTCGAGGCGGCGCGGCCGGCGTTGGAGAGCGGTGGCGGCGGTGGAGGCGCGCCGCCGCCGGGGAGGGCGGACGCGAGCTTCGACACCAACATGGTGATCATCCTGGCGGCGCTCTTCTTCGCGCTGCTGTTCGCCATCGGGCTCAACTCGCTGGCGCGGTGCGCGCTCCGGTGCGGGGGCCGGGGCGCGGCCGCCGCAGGCGGCGGCGGCGGCGGAGGAGGAGGAGGAGCGGCGGCGGCCGGGGTGGGGTGCGGCGGCATCAAGAAGCGCGCGCTGAGGAGCATCCCGGTGGAGGTGTACTGCGGCGGGGAGGAGACGGCGGAGACCGACGTGTGCGCCATCTGCCTCGGCGAGTTCGCGGACGGCGAGAAGGTGCGCGTGCTGCCGCGGTGCCGGCACGGGTTCCACGTCCGGTGCGTCGACGCCTGGCTGGTCTCGCACGGCTCCTGCCCGACGTGCCGCCGCCAGGTGATCGGCGGCGGCGGGAGCACGCCGCCGCCGGACAGCGACACCATCGCCGTGGTCGTAGCATGATGTGAGAGACAAAAGATATACTACTCCAGTAGTCTTCGTAGCTAGCTGGGCTCCTGCCTGGCCTCTTTGGCGCCAATCCCTTCTAAAAAATATCTCGCTGATCGATCTGATCTCTCCGGATATTTTCCGGCGAACGGCTAGTGACTAGTGACTCATCAGCTTGTTGTGGCGAATGTATTGACGGGTGCCCAATTGGCCCAAATTGGTCACTGTATATACACGTTCAACATCGCCGTCCCGAAATGTACTGTACCACTA] [+] EMBL CF325326 [ CGGCGGCGGCGGAGGAGGAGGAGGAGCGGCGGCGGCCGGGGTGGGGTGCGGCGGCATCAAGAAGCGCGCGCTGAGGAGCATCCCGGTGGAGGTGTACTGCGGCGGGGAGGAGACGGCGGAGACCGACGTGTGCGCCATCTGCCTCGGCGAGTTCGCGGACGGCGAGAAGGTGCGCGTGCTGCCGCGGTGCCGGCACGGGTTCCACGTCCGGTGCGTCGACGCCTGGCTGGTCTCGCACGGCTCCTGCCCGACGTGCCGCCGCC ] [+] EMBL CF325350 [ CGGCGGCGGCGGAGGAGGAGGAGGAGCGGCGGCGGCCGGGGTGGGGTGCGGCGGCATCAAGAAGCGCGCGCTGAGGAGCATCCCGGTGGAGGTGTACTGCGGCGGGGAGGAGACGGCGGAGACCGACGTGTGCGCCATCTGCCTCGGCGAGTTCGCGGACGGCGAGAAGGTGCGCGTGCTGCCGCGGTGCCGGCACGGGTTCCACGTCCGGTGCGTCGACGCCTGGCTGGTCTCGCACGGCTCCTGCCCGACGTGCCGC ] consensusID : consensus_7735#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 385 fasta sequence [ACTTGCTGTTGTTGATTCTCCTCCTCCTCCTCATCTCATCTCCCGAAATACTAATCCAGCTCGATCGTGTGGGAAAGAGATCACAGAAGGTACTTGGCTAGCTCACTCCATCAATCGATCGATCGGTACAGTTTAGCAACAGTTAAGCTTCACCTTTTTGTATTAGCTAGTGGCAGTCGCTACTACGTCCACGTCCTTTTGTGTTACGGATTGGTTCGCGAGCGAGATAACTGGTGAGTAGTAGTAGCTTTTCCACTGACCTGGACCTGTACATTCGGCGCATAATTTGCCGGGAAGCTTAGCGTGTTNGTTCTAAGTCCTAGTAAGTTGGGGGGGANGCCATGGGGGGTGCACACGAAGTCCGATGAACCTGGTAATGGGGGAN] [+] EMBL C72686 [ACTTGCTGTTGTTGATTCTCCTCCTCCTCCTCATCTCATCTCCCGAAATACTAATCCAGCTCGATCGTGTGGGAAAGAGATCACAGAAGGTACTTGGCTAGCTCACTCCATCAATCGATCGATCGGTACAGTTTAGCAACAGTTAAGCTTCACCTTTTTGTATTAGCTAGTGGCAGTCGCTACTACGTCCACGTCCTTTTGTGTTACGGATTGGTTCGCGAGCGAGATAACTGGTGAGTAGTAGTAGCTTTTCCACTGACCTGGACCTGTACATTCGGCGCATAATTTGCCGGGAAGCTTAGCGTGTTNGTTCTAAGTCCTAGTAAGTTGGGGGGGANGCCATGGGGGGTGCACACGAAGTCCGATGAACCTGGTAATGGGGGAN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7735#0 ---------------------------CTACTACTACTACGGCTCAACTCCACTTGCTGT 33 consensus_7735#2 ---------------------------------------------------ACTTGCTGT 9 consensus_7735#1 TATCTACCTGGAGTTAGTGTAGGTGAGAGGTTAGGTCGATCATGGCGAGTGGTGTTGCGG 60 * * consensus_7735#0 TGTTGATTCTCCTCCTCCTCCTCATCTCATCTCCCGAAATACTAATCCAGCTCGATCGTG 93 consensus_7735#2 TGTTGATTCTCCTCCTCCTCCTCATCTCATCTCCCGAAATACTAATCCAGCTCGATCGTG 69 consensus_7735#1 CGCCGGCGCCGAGCGTGTTCGAGGCGGCGCGGCCGGCGTTGGAGAGCGGTGGCGGCGGTG 120 * * * * * ** * ** * * * * ** *** consensus_7735#0 TGGGAAAGAGATCACAGAGGGTACTTG--GCTAGCTC--ACTCCATCA-----ATCGATC 144 consensus_7735#2 TGGGAAAGAGATCACAGAAGGTACTTG--GCTAGCTC--ACTCCATCA-----ATCGATC 120 consensus_7735#1 GAGGCGCGCCGCCGCCGGGGAGGGCGGACGCGAGCTTCGACACCAACATGGTGATCATCC 180 ** * * * * * * ** **** ** *** ** *** * consensus_7735#0 GATCGGTACAGTTTAGCA-ACAGTTAAGCTTCACCTTTTTGTATTAGCTAGTGGCAGTCG 203 consensus_7735#2 GATCGGTACAGTTTAGCA-ACAGTTAAGCTTCACCTTTTTGTATTAGCTAGTGGCAGTCG 179 consensus_7735#1 TGGCGGCGCTCTTCTTCGCGCTGCTGTTCGCCATCGGGCTCAACTCGCTGGCGCGGTGCG 240 *** * ** * * * * * ** * * * * *** * * ** consensus_7735#0 CTACTACGTCCACGTCCTTTTGTGTTACGGAT-TGGTTCGCGAGCGAGATAACTG-CGTG 261 consensus_7735#2 CTACTACGTCCACGTCCTTTTGTGTTACGGAT-TGGTTCGCGAGCGAGATAACTGGTGAG 238 consensus_7735#1 CGCTCCGGTGCGGGGGCCGGGGCGCGGCCGCCGCAGGCGGCGGCGGCGGCGGAGGAGGAG 300 * ** * * * * * * * * *** * * * * * consensus_7735#0 TTGTTCTAAGTTCT--AGTAAGTTGGGGGGAGGCCATGGGGGTGCACACGAAGTCGATGA 319 consensus_7735#2 TAGTAGTAGCTTTTCCACTGACCTGGACCTGTACATTCG--GCGCATAATTTGCCGGGAA 296 consensus_7735#1 GAGGAGCGGCGGCGGCCGGGGTGGGGTGCGGCGGCATCAAGAAGCGCGCGCTGAGGAGCA 360 * ** * ** * * * consensus_7735#0 GCT-GGTACATGGGGACGCCGGCCTCGCCGTCGCCGGGGAGCGCCG-GGGAGGCGCAGCA 377 consensus_7735#2 GCTTAGCGTGTTNGTTCTAAGTCCTAGTAAGTTGGGGGGGANGCCATGGGGGGTGCA-CA 355 consensus_7735#1 TCCCGGTGGAGGTGTACTGCGGCG-GGGAGGAGACGGCGGAGACC--GACGTGTGCGCCA 417 * * * * * * * ** * ** * * ** ** consensus_7735#0 CGCACTGAGCAGCGGCGGGGGAGGG-GGCAGCGACGCCAGCTTCGACACCAACATGGTGA 436 consensus_7735#2 CGAAGTCCGATGAACCTGGTAATGG-GGGAN----------------------------- 385 consensus_7735#1 TCTGCCTCGGCGAGTTCGCGGACGGCGAGAAGGTGCGCGTGCTGCCGCGGTGCCGGCACG 477 * * * * ** * * consensus_7735#0 TCATCCTCGCGGCGCTGCTCTTCGCGCTGCTGTTCGCGCTCGGGCTCAACTCGCTCGCGC 496 consensus_7735#2 ------------------------------------------------------------ consensus_7735#1 GGTTCCACGTCCGGTGCGTCGACGCCTGGCTGGTCTCGCACGGCTCCTGCCCGACGTGCC 537 consensus_7735#0 GGCTCATCATCCGGTGGGCGCGGCGGGCGGCGACGGGGGAAGGCGCCGGCGGCGGCGTGG 556 consensus_7735#2 ------------------------------------------------------------ consensus_7735#1 GCCGCCAGGTGATCGGCGGCGGCGGGAGCACGCCGCCGCCGGACAGCGACACCATCGCCG 597 consensus_7735#0 AGGGGGCGGGCGCCGGCGGCGGGCTCAAAAAGCGCGCGCTCAGGAGCATCCCCATCAAGG 616 consensus_7735#2 ------------------------------------------------------------ consensus_7735#1 TGGTCGTAGCATGATGTGAGAGACAAAAGATATACTACTCCAGTAGTCTTCGTAGCTAGC 657 consensus_7735#0 TGTACGGCGGAGGTGGTGGAGGGAGCCCCGCCGCCGCGGCGGAGGTCTGCGCCATCTGCC 676 consensus_7735#2 ------------------------------------------------------------ consensus_7735#1 TGGGCTCCTGCCTGGCCTCTTTGGCGCCAATCCCTTCTAAAAAATATCTCGCTGATCGAT 717 consensus_7735#0 TCGGCGAGTTCGCGGACGGCGAGAAGGTGCGCGTGCTGCCGCGCTGCGGCCATGGCTTCC 736 consensus_7735#2 ------------------------------------------------------------ consensus_7735#1 CTGATCTCTCCGGATATTTTCCGGCGAACGGCTAGTGACTAGTGACTCATCAGCTTGTTG 777 consensus_7735#0 ACGTCCGCTGCGTCGACACGTGGCTCGTCTCCCACGACTCCTGCCCCACGTGCCGGGGCT 796 consensus_7735#2 ------------------------------------------------------------ consensus_7735#1 TGGCGAATGTATTGACGGGTGCCCAATTGGCCCAAATTGGTCACTGTATATACACGTTCA 837 consensus_7735#0 CCGTCCTCCACGACGCCACCACCAAGCACAAACCAACCGCCGCCGCCGCCGCCGCGGGCA 856 consensus_7735#2 ------------------------------------------------------------ consensus_7735#1 ACATCGCCGTCCCGAAATGTACTGTACCACTA---------------------------- 869 consensus_7735#0 GCCGGCGGCCGGGGAGCGAGGTCGACGCCCCCGCCGCCGCCGCCGTGACGGTGGTCATCG 916 consensus_7735#2 ------------------------------------------------------------ consensus_7735#1 ------------------------------------------------------------ consensus_7735#0 CGTGACCGGGGCAGGTGGGCCCCCGCTTCCCCCAGCCGCTGTGGGCCCAGTGTAACATAC 976 consensus_7735#2 ------------------------------------------------------------ consensus_7735#1 ------------------------------------------------------------ consensus_7735#0 CCATGTAAAAAATCTCCTTTCTTGTTTTGGACCTATGTAAAAAAATCTCTCCTTGGGCCA 1036 consensus_7735#2 ------------------------------------------------------------ consensus_7735#1 ------------------------------------------------------------ consensus_7735#0 GGCCATGGCCCATGGCCGTGAGATATTTTCCGACGTTGGTGCTGTGAGAGGATGACGGGT 1096 consensus_7735#2 ------------------------------------------------------------ consensus_7735#1 ------------------------------------------------------------ consensus_7735#0 GGGCCCGCTCGTCTGTTCAGTTTGTAGGTTACTCACAGTAGTCCACCGTCCATTCGATTT 1156 consensus_7735#2 ------------------------------------------------------------ consensus_7735#1 ------------------------------------------------------------ consensus_7735#0 CGATCTTGGCTAGCAAGGGCAGTTGTTGTGGAGGTTAGGAGGTACAGGACGCTTACAGTT 1216 consensus_7735#2 ------------------------------------------------------------ consensus_7735#1 ------------------------------------------------------------ consensus_7735#0 ACGTACAGGCTTGTAATATTACCGTATAAGTAGTATCATTTTGCGAGGAAATACCGTAT 1275 consensus_7735#2 ----------------------------------------------------------- consensus_7735#1 ----------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||