cluster # 7747

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Oryza sativa
cluster # 7747 cluster # 7747 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7747#0 length = 774 sequences # 2

consensus_7747#1 length = 449 sequences # 3

consensusID : consensus_7747#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 774
fasta sequence

                              [TCTTTTTTTTTTTTTTAGATCCATTCTATCGATGCTCCCTTGTGCTAGATTTATGGCACATCAAATTCTTACAAGTTACAGCATCACATATACCGTAGCAAGCAGATCAAAATGGACCAAACCTACTTACCCATATACAAATCTGACCATATATATATACAGTTTCTCTTGCAGAGCAAAAGTATGTTCCTATATATTAAAGGGCTGAAGATGAGTACTAAAAAACACACACCTTCATATATATTCACGGCAAGAGCTGCACATAACCAGTCAGGACTGCAATAGCTAAGATGGCCAATGGCGGCACTAGGACAAATGCGCCAACGGTGGCGAAGAACACTGAGTCGTTCCGTCCACTGACCTTGGTGAGCAGGGCCTGCCTCTTGATGTTCCTCCTCTGGGAGACGGTCAGGGAGTTGAGTTTCTTCAGACCTTCCTTGAGCTTCTTGCCCAACGGGAGGGTGTACTCACCGTCCCTGTCACCGATAACCGCTGAAAGTTGCTCACGAATAGTAGTTTGCACACGGGGTTCTGTAGGAGCACCGTTCTCCACGCCAATGCCATCAGATGTAGGGGTTGTCAGCTGCTCCAGGAGATCCAACTGGGTGCGCGCCGAAGAAACTTCAGAACAAAATGTGTCAATGTTAAGCCATTTGGCAACAAAAGTAGCTTCATGGGAACAAGTAGGCTATATGTTCAATACTTCAATGCAACAAAATGAACTAATAATATATTGTAGTACCCATACTTCAAATCCCTGGACTATGTAGCTAC]

[+] EMBL CB625760             [TCTTTTTTTTTTTTTTAGATCCATTCTATCGATGCTCCCTTGTGCTAGATTTATGGCACATCAAATTCTTACAAGTTACAGCATCACATATACCGTAGCAAGCAGATCAAAATGGACCAAACCTACTTACCCATATACAAATCTGACCATATATATATACAGTTTCTCTTGCAGAGCAAAAGTATGTTCCTATATATTAAAGGGCTGAAGATGAGTACTAAAAAACACACACCTTCATATATATTCACGGCAAGAGCTGCACATAACCAGTCAGGACTGCAATAGCTAAGATGGCCAATGGCGGCACTAGGACAAATGCGCCAACGGTGGCGAAGAACACTGAGTCGTTCCGTCCACTGACCTTGGTGAGCAGGGCCTGCCTCTTGATGTTCCTCCTCTGGGAGACGGTCAGGGAGTTGAGTTTCTTCAGACCTTCCTTGAGCTTCTTGCCCAACGGGAGGGTGTACTCACCGTCCCTGTCACCGATAACCGCTGAAAGTTGCTCACGAATAGTAGTTTGCACACGGGGTTCTGTAGGAGCACCGTTCTCCACGCCAATGCCATCAGATGTAGGGGTTGTCAGCTGCTCCAGGAGATCCAACTGGGTGCGCGCCGAAGAAACTTCAGAACAAAATGTGTCAATGTTAAGCCATTTGGCAACAAAAGTAGCTTCATGGGAACAAGTAGGCTATATGTTCAATACTTCAATGCAACAAAATGAACTAATAATATATTGTAGTACCCATACTTCAAATCCCTGGACTATGTAGCTAC]
[-] EMBL BM420208             [      TTTTTTTTTTAGATCCATTCTATCGATGCTCCCTTGTGCTAGATTTATGGCACATCAAATTCTTACAAGTTACAGCATCACATATACCGTAGCAAGCAGATCAAAATGGACCAAACCTACTTACCCATATACAAATCTGACCATATATATATACAGTTTCTCTTGCAGAGCAAAAGTATGTTCCTATATATTAAAGGTCTGAAGATGAGTACTAAAAAACACACACCTTCATATATATTCACGGCAAGAGCTGCACATAACCAGTCAGGACTGCAATAGCTAAGATGGCCAATGGCGGCACTAGGACAAATGCGCCAACGGTGGCGAAGAACACTGAGTCGTTCCGTCCACTGACCTTGGTGAGCAGGGCCTGCCTCTTGATGTTCCTCCTCTGGGAGACGGTCAGGGAGTTGAGTTTCTTCAGACCTTCCTTGAGCTTCTTGCCCAACGGGAGGGTGTACTCACCGTCCCTGTCACCGATAACCGCTGAAAGTTGCTCAC                                                                                                                                                                                                                                                                           ]




>consensus_7747#0
TCTTTTTTTTTTTTTTAGATCCATTCTATCGATGCTCCCTTGTGCTAGATTTATGGCACA
TCAAATTCTTACAAGTTACAGCATCACATATACCGTAGCAAGCAGATCAAAATGGACCAA
ACCTACTTACCCATATACAAATCTGACCATATATATATACAGTTTCTCTTGCAGAGCAAA
AGTATGTTCCTATATATTAAAGGGCTGAAGATGAGTACTAAAAAACACACACCTTCATAT
ATATTCACGGCAAGAGCTGCACATAACCAGTCAGGACTGCAATAGCTAAGATGGCCAATG
GCGGCACTAGGACAAATGCGCCAACGGTGGCGAAGAACACTGAGTCGTTCCGTCCACTGA
CCTTGGTGAGCAGGGCCTGCCTCTTGATGTTCCTCCTCTGGGAGACGGTCAGGGAGTTGA
GTTTCTTCAGACCTTCCTTGAGCTTCTTGCCCAACGGGAGGGTGTACTCACCGTCCCTGT
CACCGATAACCGCTGAAAGTTGCTCACGAATAGTAGTTTGCACACGGGGTTCTGTAGGAG
CACCGTTCTCCACGCCAATGCCATCAGATGTAGGGGTTGTCAGCTGCTCCAGGAGATCCA
ACTGGGTGCGCGCCGAAGAAACTTCAGAACAAAATGTGTCAATGTTAAGCCATTTGGCAA
CAAAAGTAGCTTCATGGGAACAAGTAGGCTATATGTTCAATACTTCAATGCAACAAAATG
AACTAATAATATATTGTAGTACCCATACTTCAAATCCCTGGACTATGTAGCTAC

consensusID : consensus_7747#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 449
fasta sequence

                              [CCTTCATATATATTCACGGCAAGAGCTGCACATAACCAGTCAGGACTGCAATAGCTAAGATGGCCAATGGCGGCACTAGGACAAATGCGCCAACGGTGGCGAAGAACACTGAGTCATTCCGTCCACTGACCTTGGTGAGCAGGGCCTGCCTCTTGATGTTCCTCCTCTGGGAGACGGTCAGGGAGTTGAGTTTCTTCAGACCTTCCTTGAGCTTCTTGCCCAACGGGAGGGTGTACTCACCGTCCCTGTCACCGATAACCGCTGAAAGTTGCTCACGAATAGTAGTTTGCACACGGGGTTCTGTAGGAGCACCGTTCTCCACGCCAATGCCATCAGATGTAGGGGTTGTCAGCTGCTCCAGGAGATCCAACTGGGTGCGCGCCGAAGAAACTGAGATGGCGGGGTCCTGCGTCGCGCCTTCCTGCCGGGCGGCAGCCGCGGCCTTGCAC]

[-] EMBL CF325024             [CCTTCATATATATTCACGGCAAGAGCTGCACATAACCAGTCAGGACTGCAATAGCTAAGATGGCCAATGGCGGCACTAGGACAAATGCGCCAACGGTGGCGAAGAACACTGAGTCATTCCGTCCACTGACCTTGGTGAGCAGGGCCTGCCTCTTGATGTTCCTCCTCTGGGAGACGGTCAGGGAGTTGAGTTTCTTCAGACCTTCCTTGAGCTTCTTGCCCAACGGGAGGGTGTACTCACCGTCCCTGTCACCGATAACCGCTGAAAGTTGCTCACGAATAGTAGTTTGCACACGGGGTTCTGTAGGAGCACCGTTCTCCACGCCAATGCCATCAGATGTAGGGGTTGTCAGCTGCTCCAGGAGATCCAACTGGGTGCGCGCCGAAGAAACTGAGATGGCGGGGTCCTGCGTCGCGCCTTCCTGCCGGGCGGCAGCCGCGGCCTTGCAC]
[-] EMBL CF325438             [     ATATATATTCACGGCAAGAGCTGCACATAACCAGTCAGGACTGCAATAGCTAAGATGGCCAATGGCGGCACTAGGACAAATGCGCCAACGGTGGCGAAGAACACTGAGTCATTCCGTCCACTGACCTTGGTGAGCAGGGCCTGCCTCTTGATGTTCCTCCTCTGGGAGACGGTCAGGGAGTTGAGTTTCTTCAGACCTTCCTTGAGCTTCTTGCCCAACGGGAGGGTGTACTCACCGTCCCTGTCACCGATAACCGCTGAAAGTTGCTCACGAATAGTAGTTTGCACACGGGGTTCTGTAGGAGCACCGTTCTCCACGCCAATGCCATCAGATGTAGGGGTTGTCAGCTGCTCCAGGAGATCCAACTGGGTGCGCGCCGAAGAAACTGAGATGGCGGGGTCCTGCGTCGCGCCTTCCTGCCGGGCGGCAGCCGCGGCCTTGCAC]
[-] EMBL CF325002             [                                                                                                                                                                                        GTTGAGTTTCTTCAGACCTTCCTTGAGCTTCTTGCCCAACGGGAGGGTGTACTCACCGTCCCTGTCACCGATAACCGCTGAAAGTTGCTCACGAATAGTAGTTTGCACACGGGGTTCTGTAGGAGCACCGTTCTCCACGCCAATGCCATCAGATGTAGGGGTTGTCAGCTGCTACAGGAGATCCAACTGGGTGCGCGCCGAAGAAACTGAGATGGCGGGGTCCTGCGTCGCGCCTTCCTGCCGGGCGGCAGCCGCGGCCTTGCAC]




>consensus_7747#1
CCTTCATATATATTCACGGCAAGAGCTGCACATAACCAGTCAGGACTGCAATAGCTAAGA
TGGCCAATGGCGGCACTAGGACAAATGCGCCAACGGTGGCGAAGAACACTGAGTCATTCC
GTCCACTGACCTTGGTGAGCAGGGCCTGCCTCTTGATGTTCCTCCTCTGGGAGACGGTCA
GGGAGTTGAGTTTCTTCAGACCTTCCTTGAGCTTCTTGCCCAACGGGAGGGTGTACTCAC
CGTCCCTGTCACCGATAACCGCTGAAAGTTGCTCACGAATAGTAGTTTGCACACGGGGTT
CTGTAGGAGCACCGTTCTCCACGCCAATGCCATCAGATGTAGGGGTTGTCAGCTGCTCCA
GGAGATCCAACTGGGTGCGCGCCGAAGAAACTGAGATGGCGGGGTCCTGCGTCGCGCCTT
CCTGCCGGGCGGCAGCCGCGGCCTTGCAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7747#0      TCTTTTTTTTTTTTTTAGATCCATTCTATCGATGCTCCCTTGTGCTAGATTTATGGCACA 60
consensus_7747#1      ------------------------------------------------------------
                                                                                  

consensus_7747#0      TCAAATTCTTACAAGTTACAGCATCACATATACCGTAGCAAGCAGATCAAAATGGACCAA 120
consensus_7747#1      ------------------------------------------------------------
                                                                                  

consensus_7747#0      ACCTACTTACCCATATACAAATCTGACCATATATATATACAGTTTCTCTTGCAGAGCAAA 180
consensus_7747#1      ------------------------------------------------------------
                                                                                  

consensus_7747#0      AGTATGTTCCTATATATTAAAGGGCTGAAGATGAGTACTAAAAAACACACACCTTCATAT 240
consensus_7747#1      ---------------------------------------------------CCTTCATAT 9
                                                                         *********

consensus_7747#0      ATATTCACGGCAAGAGCTGCACATAACCAGTCAGGACTGCAATAGCTAAGATGGCCAATG 300
consensus_7747#1      ATATTCACGGCAAGAGCTGCACATAACCAGTCAGGACTGCAATAGCTAAGATGGCCAATG 69
                      ************************************************************

consensus_7747#0      GCGGCACTAGGACAAATGCGCCAACGGTGGCGAAGAACACTGAGTCGTTCCGTCCACTGA 360
consensus_7747#1      GCGGCACTAGGACAAATGCGCCAACGGTGGCGAAGAACACTGAGTCATTCCGTCCACTGA 129
                      ********************************************** *************

consensus_7747#0      CCTTGGTGAGCAGGGCCTGCCTCTTGATGTTCCTCCTCTGGGAGACGGTCAGGGAGTTGA 420
consensus_7747#1      CCTTGGTGAGCAGGGCCTGCCTCTTGATGTTCCTCCTCTGGGAGACGGTCAGGGAGTTGA 189
                      ************************************************************

consensus_7747#0      GTTTCTTCAGACCTTCCTTGAGCTTCTTGCCCAACGGGAGGGTGTACTCACCGTCCCTGT 480
consensus_7747#1      GTTTCTTCAGACCTTCCTTGAGCTTCTTGCCCAACGGGAGGGTGTACTCACCGTCCCTGT 249
                      ************************************************************

consensus_7747#0      CACCGATAACCGCTGAAAGTTGCTCACGAATAGTAGTTTGCACACGGGGTTCTGTAGGAG 540
consensus_7747#1      CACCGATAACCGCTGAAAGTTGCTCACGAATAGTAGTTTGCACACGGGGTTCTGTAGGAG 309
                      ************************************************************

consensus_7747#0      CACCGTTCTCCACGCCAATGCCATCAGATGTAGGGGTTGTCAGCTGCTCCAGGAGATCCA 600
consensus_7747#1      CACCGTTCTCCACGCCAATGCCATCAGATGTAGGGGTTGTCAGCTGCTCCAGGAGATCCA 369
                      ************************************************************

consensus_7747#0      ACTGGGTGCGCGCCGAAGAAACTTCAGAACAAAATGTGTCAATGTTAAGCCATTTGGC-- 658
consensus_7747#1      ACTGGGTGCGCGCCGAAGAAACT--GAGATGGCGGGGTCCTGCGTCGCGCCTTCCTGCCG 427
                      ***********************     *      *   *   **   *** *   **  

consensus_7747#0      AACAAAAGTAGCTTCATGGGAACAAGTAGGCTATATGTTCAATACTTCAATGCAACAAAA 718
consensus_7747#1      GGCGGCAGCCGCGGCCTTGCAC-------------------------------------- 449
                        *   **  **  * * * *                                       

consensus_7747#0      TGAACTAATAATATATTGTAGTACCCATACTTCAAATCCCTGGACTATGTAGCTAC 774
consensus_7747#1      --------------------------------------------------------