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Oryza sativa
cluster # 7752 cluster # 7752       Sequences # 5       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7752#0 length = 1513 sequences # 5  

consensusID : consensus_7752#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1513
fasta sequence
                              [TCCCTGTGTTTCCTTCACATCCACTCTCCCATCCAGATTCCCAAGCCCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCACTCCAGTCGAGGCACGGCCGGCTCCCCCCGCGTCGCCGGCGAGCAGGGCACGGGCGTGTCGCGCTCGCGGACGGCCTCCCCTCCCCTCCCCTCGTCCTAGCCTTCTCCTCCGTGCGGCGCACGGCCGGCGAGGCCACCCAGGGTTGGTGACCCAAGGGGGGCGAGAGCGCGGAGACGCGGCCCCCCCATCCATCTCCGTCTCCCCCGTCCGGATCGAATCCGAGGTCTATAAATGGCAGGAAGACACCGCATACCTCGTGAATACTATGATGAACGTCGAGGATTTCGTGATGGCCCCCCCACCTCCGCTTGCTCGAGCAAGGCCCATCTCTCCACGTCGCTTGGAGGAGGAGCTGTCTAGCCGCCGTGCTGAGATGCGCAGAATCCATGATGACAATCAGCGCCTAGCTGATGAAATTGTTGGTCTCAGGCAGGCAATGCCTCGTCTGAAGGAAGATCTCCATGCCGCAAGTCAAGCTATACCCAAGCTTCGTGCAGAAAAAGAACTTGAGTCAAGGGAGCTGACTCAGAGGAATCTGAAGTTGGAAGCTGAACTACGTTCCTTAGAACCCCTCAGGCAAGATGCCTTACAGCTACGGT-CCGAGGCCGGGAAACTACAGTCAATAAGGCAAGAGCTGACTGCAAAGGTGCAGGGGTTGTTAAAAGAGCTTGAGCATCAGAATTCTGAGAACCAG-AAATACCTGTCATGATAGCTGAACGTGATGCTCTTCGGCAGGAACTAGTCCGAATGAGGGGAACCCTTGAGTACGAGAAGAAGGCAAGGCCTGATCTGACAGCACAGGTGCAGGCAATGGAGAAGGATCTTGTTTCTATGGCTCAGGAATCTGAGAAGCTGAGGGCTGAGATTAAGAAGAGAAATGCACCCAGTTTCAGCGGCCATGGAGCTTATGGACCACCAATGGCGACTCCAGGGATGGGCCTGCAAGGCGTCTATGATGATGGCTATCCTTCCATAGGCAGCCGCTATGGCACTGGATCTTGGGCACCACATGATCCCCATGGTTATCCACAACTGTGACTGGGCTTCTGATCTTTCTTCCCTGGGCAGTGCTTTATCTTCGTAATATCGCTTGATGGTTGATACTGATCGTGACAAAGCTTTTCTCTTAGTAGAACTTGTGGTGCACAGTAGATGGTCTTTTG-GGGGTGCACTTCAAGTGTTGTTAGTTTAGCATATGTAGCAATATACCCGCTATGGTTGCCTTGGTACCTCTCCAAAAAATGTAATCAATGATGACTGTAAGAGGGAATTCAGTGCAACGAAGAAGAAAAATAGGAACTTAAGCTTTACAAGATGCAAGTTTGCGTATGAATATAACAAGGTGGAATCAGTCAGGGCCTGGATGTTGCGCAGAAGTTTGTCCCTACCAAATTGCAATAGCAAAAATTACTTATTCATGAGCGATA]

[+] EMBL AK070561             [TCCCTGTGTTTCCTTCACATCCACTCTCCCATCCAGATTCCCAAGCCCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCACTCCAGTCGAGGCACGGCCGGCTCCCCCCGCGTCGCCGGCGAGCAGGGCACGGGCGTGTCGCGCTCGCGGACGGCCTCCCCTCCCCTCCCCTCGTCCTAGCCTTCTCCTCCGTGCGGCGCACGGCCGGCGAGGCCACCCAGGGTTGGTGACCCAAGGGGGGCGAGAGCGCGGAGACGCGGCCCCCCCATCCATCTCCGTCTCCCCCGTCCGGATCGAATCCGAGGTCTATAAATGGCAGGAAGACACCGCATACCTCGTGAATACTATGATGAACGTCGAGGATTTCGTGATGGCCCCCCCACCTCCGCTTGCTCGAGCAAGGCCCATCTCTCCACGTCGCTTGGAGGAGGAGCTGTCTAGCCGCCGTGCTGAGATGCGCAGAATCCATGATGACAATCAGCGCCTAGCTGATGAAATTGTTGGTCTCAGGCAGGCAATGCCTCGTCTGAAGGAAGATCTCCATGCCGCAAGTCAAGCTATACCCAAGCTTCGTGCAGAAAAAGAACTTGAGTCAAGGGAGCTGACTCAGAGGAATCTGAAGTTGGAAGCTGAACTACGTTCCTTAGAACCCCTCAGGCAAGATGCCTTACAGCTACGGT CCGAGGCCGGGAAACTACAGTCAATAAGGCAAGAGCTGACTGCAAAGGTGCAGGGGTTGTTAAAAGAGCTTGAGCATCAGAATTCTGAGAACCAG AAATACCTGTCATGATAGCTGAACGTGATGCTCTTCGGCAGGAACTAGTCCGAATGAGGGGAACCCTTGAGTACGAGAAGAAGGCAAGGCCTGATCTGACAGCACAGGTGCAGGCAATGGAGAAGGATCTTGTTTCTATGGCTCAGGAATCTGAGAAGCTGAGGGCTGAGATTAAGAAGAGAAATGCACCCAGTTTCAGCGGCCATGGAGCTTATGGACCACCAATGGCGACTCCAGGGATGGGCCTGCAAGGCGTCTATGATGATGGCTATCCTTCCATAGGCAGCCGCTATGGCACTGGATCTTGGGCACCACATGATCCCCATGGTTATCCACAACTGTGACTGGGCTTCTGATCGTTCTTCCCTGGGCAGTGCTTTATCTTCGTAATATCGCTTGATGGTTGATACTGATCGTGACAAAGCTTTTCTCTTAGTAGAACTTGTGGTGCACAGTAGATGGTCTTTTG GGGGTGCACTTCAAGTGTTGTTAGTTTAGCATATGTAGCAATATACCAGCTATGGTTGCCTTGGTACCTCTCCAAAAAATGTAATCAATGATGACTGTAAGAGGGAATTCAGTGCAACGAAGAAGGAAAATAGGAACTTAAGCTTTACAAGATGCAAGTTTGCGTATGAATATAACAAGGT                                                                                   ]
[+] EMBL BI118784             [                                                                                                                                                                                                                                                                                                                                                                                                                           ATCTCTCCACGTCGCTTGGAGGAGGAGCTGTCTAGCCGCCGTGCTGAGATGCGCAGAATCCATGATGACAATCAGCGCCTAGCTGATGAAATTGTTGGTCTCAGGCAGGCAATGCCTCGTCTGAAGGAAGATCTCCATGCCGCAAGTCAAGCTATACCCAAGCTTCGTGCAGAAAAAGAACTTGAGTCAAGGGAGCTGACTCAGAGGAATCTGAAGTTGGAAGCTGAACTACGTTCCTTAGAACCCCTCAGGCAAGATGCCTTACAGCTACGGTCCCGAGGCCGGGAAACTACAGTCAATAAGGCAAGAGATGACTGCAAAGGTGCAGGGGTTGTTAAAAGAGCTTGAGCATCAGAATTCTGAGAACCAGAAAATACCTGTGATGATAGCTGAACGTGATGCTCTTCGGCAGGAACTAGTCCGAATGAGGGGAAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CA762542             [                                                                                                                                                                                                                                                                                                                                                                                                                                       CGCTTGGAGGAGGAGCTGTCTAGCCGCCGTGCTGAGATGCGCAGAATCCATGATGACGATCAGCGCCTAGCTGATGAAATTGTTGGTCTCAGGCAGGCAATGCCTCGTCTGAAGGAAGATCTCCATGCCGCAAGTCAAGCTATACCCAAGCTTCGTGCAGAAAAAGAACTTGAGTCAAGGGAGCTGACTCTGAGGAATCTGAAGTTGGAAGCTGAACTACGTTCCTTAGAACCCCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL BI801792             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CCTTGAGTACGAGAAGAAGCCAAGCCCTGATCTGACAGCACAGGTCCA GCAATGGAGAAGGATCTTGTTTCTATGGCTCAGGAATCTGAGAA CTGAGGGCTGAGATTAAGAAGAGAAATGCACCCAGTTTCACCGGCCATGGAGCTTATGGACCACCAATGGCGACTCCAGGGATGGGCCTGCAAGGCGTCTATGATGATGGCTATCCTTCCATAGCCA CCGCTATGGCACTGGATCTTGGGCACCACATGATCCCCATGGTTATCCACAACTGTGACTGGGCTTCTGATCTTTCTTCCCTGGGCAGTGCTTTATCTTCGTAATATCGCTTGATGGTTGATACTGATCGTGAC AAGCTTTTCTCTTAGTAGAACTTGTGGTGCACAGTAGATGGTCTTTTGCGGGGTGCACTTCAAGTGTTGTTAGTTTAGCATATGTAGC ATATACCCGCTATGGTTGCCTTGGTACCTCTCCAAAAAATGTAATC ATGATGACTGTAAGAGGGAATTCAGTGCAACGAAGAAGAAAAATAGGAACTTAAGCTTTACCAGATGCAAGTTTGCGTATGAATATAAAAAa                                                                                     ]
[+] EMBL CA764606             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        aggggGAAGAGAAATGCACCCAGTTT AGCGGCCATGGAGCTTATGGACCACCAATGGCGACTCCAGGGATGGGCCTGCAAGGCGTCTATGATGATGGCTNTCCTTCCATAGGCAGCCGCTATGGCACTGGATCTTGGGCACCACATGATCCCCATGGTTATCCACAACTGTGACTGGGCTTCTGATCTTTCTTCCCTGGGCAGTGCTTTATCTTCGTAATATCGCTTGATGGTTGATACTGATCGTGACAAAGCTTTTCTCTTAGTAGAACTTGTGGTGCACAGTAGATGGTCTTTTG GGGGTGCACTTCAAGTGTTGTTAGTTTAGCATATGTAGCAATATACCCGCTATGGTTGCCTTGGTACCTCTCCAAAAAATGTAATCAATGATGACTGTAAGAGGGAATTCAGTGCAACGAAGAAGAAAAATAGGAACTTAAGCTTTACAAGATGCAAGTTTGCGTATGAATATAACAAGGTGGAATCAGTCAGGGCCTGGATGTTGCGCAGAAGTTTGTCCCTACCAAATTGCAATAGCAAAAATTACTTATTCATGAGCGATA]


>consensus_7752#0 TCCCTGTGTTTCCTTCACATCCACTCTCCCATCCAGATTCCCAAGCCCATCTCTCTCTCT CTCTCTCTCTCTCTCTCTCTCTCCACTCCAGTCGAGGCACGGCCGGCTCCCCCCGCGTCG CCGGCGAGCAGGGCACGGGCGTGTCGCGCTCGCGGACGGCCTCCCCTCCCCTCCCCTCGT CCTAGCCTTCTCCTCCGTGCGGCGCACGGCCGGCGAGGCCACCCAGGGTTGGTGACCCAA GGGGGGCGAGAGCGCGGAGACGCGGCCCCCCCATCCATCTCCGTCTCCCCCGTCCGGATC GAATCCGAGGTCTATAAATGGCAGGAAGACACCGCATACCTCGTGAATACTATGATGAAC GTCGAGGATTTCGTGATGGCCCCCCCACCTCCGCTTGCTCGAGCAAGGCCCATCTCTCCA CGTCGCTTGGAGGAGGAGCTGTCTAGCCGCCGTGCTGAGATGCGCAGAATCCATGATGAC AATCAGCGCCTAGCTGATGAAATTGTTGGTCTCAGGCAGGCAATGCCTCGTCTGAAGGAA GATCTCCATGCCGCAAGTCAAGCTATACCCAAGCTTCGTGCAGAAAAAGAACTTGAGTCA AGGGAGCTGACTCAGAGGAATCTGAAGTTGGAAGCTGAACTACGTTCCTTAGAACCCCTC AGGCAAGATGCCTTACAGCTACGGTCCGAGGCCGGGAAACTACAGTCAATAAGGCAAGAG CTGACTGCAAAGGTGCAGGGGTTGTTAAAAGAGCTTGAGCATCAGAATTCTGAGAACCAG AAATACCTGTCATGATAGCTGAACGTGATGCTCTTCGGCAGGAACTAGTCCGAATGAGGG GAACCCTTGAGTACGAGAAGAAGGCAAGGCCTGATCTGACAGCACAGGTGCAGGCAATGG AGAAGGATCTTGTTTCTATGGCTCAGGAATCTGAGAAGCTGAGGGCTGAGATTAAGAAGA GAAATGCACCCAGTTTCAGCGGCCATGGAGCTTATGGACCACCAATGGCGACTCCAGGGA TGGGCCTGCAAGGCGTCTATGATGATGGCTATCCTTCCATAGGCAGCCGCTATGGCACTG GATCTTGGGCACCACATGATCCCCATGGTTATCCACAACTGTGACTGGGCTTCTGATCTT TCTTCCCTGGGCAGTGCTTTATCTTCGTAATATCGCTTGATGGTTGATACTGATCGTGAC AAAGCTTTTCTCTTAGTAGAACTTGTGGTGCACAGTAGATGGTCTTTTGGGGGTGCACTT CAAGTGTTGTTAGTTTAGCATATGTAGCAATATACCCGCTATGGTTGCCTTGGTACCTCT CCAAAAAATGTAATCAATGATGACTGTAAGAGGGAATTCAGTGCAACGAAGAAGAAAAAT AGGAACTTAAGCTTTACAAGATGCAAGTTTGCGTATGAATATAACAAGGTGGAATCAGTC AGGGCCTGGATGTTGCGCAGAAGTTTGTCCCTACCAAATTGCAATAGCAAAAATTACTTA TTCATGAGCGATA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)