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Oryza sativa
cluster # 7758 cluster # 7758       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7758#0 length = 1174 sequences # 3  
consensus_7758#1 length = 640 sequences # 2  

consensusID : consensus_7758#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1174
fasta sequence
                              [GAGAGCCTTCTGTTGATCTTTCTAGGGACGCTTGGGTTCGAATGAAGCTGGGTATATATAAAGGTGACCTTGCTAAGGTTGTCGATGTTGACAATGTGCGCCAAAGGGTTACTGTGAAGCTGATCCCTAGAATAGATTTACAAGCTTTGGCTAGTAAACTGGAAGGGAGGGAGGCTGTGAAGAAGAAAGCATTTGTCCCACCACCACGTTTCTTTAATATTGATGAGGCCAGGGAGATGCACATTCGTGTGGAACGGAGGAGGGATAAAGACT-CTGGGGAGTACTTTGAGATGATTGATGGCTTAATGTTCAAAGATGGCTTCTTATACAAAACTGTCTCAATAAAATCAATCAGCACACAGAATATTCAGCCATCATTCGATGAACTGGAGAAGTTCAGAAAACCTGGTGATGACATGAATGGGGATATGTCTAGCTTGTCTACGCTTTTTGCTAATAGGAAAAAGGGGCACTTTATGAAGGGTGATGCTGTCATTGTTATCAAAGGTGATCTGAAAAATTTGGAGGGTTGGGTTGAGAAAGTAGAGGATGAGACTGTTCACATCAGACCAAAAATATCTGATCTACCGAAAACGTTAGCCTTCAATGAGAAAGAGCTTTGCAAGTATTTTAAACCCGGAGATCATGTTAAAGTGGTATCAGGTGTTCAAGAAGGTGCAACAGGCATGGTTGTTAAAGTGGAAGGGCATGTCTTGATAATTTTATCTGACACGACAAAAGAACATATACGTGTGTTTGCGGACCATGTTGTGGAGAGCTCTGAGATCACAACGGG-AATAACCAGAATTGGTGATTATGAGCTGCATGATCTTGCTCTTTTGGACAACTTGTCATTTGGGGTTATTATAAGGGTGGAAACTGACGCATTTCAGGTTCTGAAAGGAGTACCGGATAGACCAGAACTTGTCCTAGTAAAATTAAGAGAAATAAAAAGCAAGATTGATCGCCGAACATCCGCAAAAGATCGGTCCAACAATATGATTTCATCTAAGGATGTTGTCCGAGTAGTTGAGGGAGCATGCAAGGGAAAACAAGGACCAGTGGAAATGGTATGGATACGTCAGATCCAAGGCTTGGTGCTTTGAGATCTCCAGCAAGCATTTTGCAATCACCGGGAAGGCTGCCCCCAAGAGGACCTCATATGAACTTTGGT]

[+] EMBL CB671673             [GAGAGCCTTCTGTTGATCTTTCTAGGGACGCTTGGGTTCGAATGAAGCTGGGTATATATAAAGGTGACCTTGCTAAGGTTGTCGATGTTGACAATGTGCGCCAAAGGGTTACTGTGAAGCTGATCCCTAGAATAGATTTACAAGCTTTGGCTAGTAAACTGGAAGGGAGGGAGGCTGTGAAGAAGAAAGCATTTGTCCCACCACCACGTTTCTTTAATATTGATGAGGCCAGGGAGATGCACATTCGTGTGGAACGGAGGAGGGATAAAGACT CTGGGGAGTACTTTGAGATGATTGATGGCTTAATGTTCAAAGATGGCTTCTTATACAAAACTGTCTCAATAAAATCAATCAGCACACAGAATATTCAGCCATCATTCGATGAACTGGAGAAGTTCAGAAAACCTGGTGATGACATGAATGGGGATATGTCTAGCTTGTCTACGCTTTTTGCTAATAGGAAAAAGGGGCACTTTATGAAGGGTGATGCTGTCATTGTTATCAAAGGTGATCTGAAAAATTTGGAGGGTTGGGTTGAGAAAGTAGAGGATGAGACTGTTCACATCAGACCAAAAATATCTGATCTACCGAAAACGTTAGCCTTCAATGAGAAAGAGCTTTGCAAGTATTTTAAACCCGGAGATCATGTTAAAGTGGTATCAGGTGTTCAAGAAGGTGCAACAGGCATGGTTGTTAAAGTGGAAGGGCATGTCTTGATAATTTTATCTGACACGACAAAAGAACATATACGTGTGTTTGCGGACCATGTTGTGGAGAGCTCTGAGATCACAACGGGAAATACCCAG ATTGGTGATTATGAGCTGCATGA                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CB672984             [                                                                                                                                                                                                                                                ACATTCGTCTGGAACGGAGGAGGGATAAAGACTCCTGGGGAGTACTTTGAGATGATTGATGGCTTAATGTTCAAAGATGGCTTCTTATACAAAACTGTCTCAATAAAATCAATCAGCACACAGAATATTCAGCCATCATTCGATGAACTGGAGAAGTTCACAAAACCTGGTGATGACATGAATGGGGATATGTCTAGCTTGTCTACGCTTTTTGCTAATAGGAAAAAGGGGCACTTTATGAAGGGTGATGCTGTCATTGATATCAAAGGTGATCTGAAAAATTTGGAGGGTTGGGTTGAGAAAGTACAGGATGAGACTGTTCACATCAGACCAAAAATATCTGATCTACCGAAAACGTTAGCCTTCAATGAGAAAGAGCTTTGCAAGTATTTTAAACCCGGAGATCATGTTAAAGTGGTATCACGTGTTCAAGAAGGTGCAACAGGCATGGATGTTAAAGTGGAAGGGCATGTCTTGATAATTTTATCTGACACGACAAAAGAACATATACGTGTGTTTGCGGACCATGTTGTGGAGAGCTCTGAGATCACAACGGG AATAACCAGAATTGGTGATTATGAGCTGCATGATCTTGCTCTTTTGGACAACTTGTCATTTGGGGTTATTATAAGGGTGGAAACTGACGCATTTCAGGTTCTGAAAGGAGTACCGGATAGACCAGAACTTGTCCTAGTAAAATTAAGAGAAATAAAAAGCAAGATTGATCGCCGAACATCCGCAAAAGATCGGTCCAACAAT                                                                                                                                                                                ]
[+] EMBL CB668947             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   AGGATGAGCCTGTTCACATCAGACCAAAAATATCTGATCTACCGAAAACGTTAGCCTTCAATGAGAAAGAGCTTTGCAAGTATTTTAAACCCGGAGATCATGTTAAAGTGGTATCAGGTGTTCAAGAAGGTGCAACAGGCATGGTTGTTAAAGTGGAAGGGCATGTCTTGATAATTTTATCTGACACGACAAAAGAACATATACGTGTGTTTGCGGACCATGTTGTGGAGAGCTCTGAGATCACAACGGG AATAACCAGAATTGGTGATTATGAGCTGCATGATCTTGTTCTTTTGGACAACTTGTCATTTGGGGTTATTATAAGGGTGGAAACTGAGGCATTTCAGGTTCTGAAAGGAGTACCGGATAGACCAGAAGTTGTCCTAGTAAAATTAAGAGAAATAAAAAGCAAGATTGATCGCCGAACATCCGCAAAAGATCGGTCCAACAATATGATTTCATCTAAGGATGTTGTCCGAGTAGTTGAGGGAGCATGCAAGGGAAAACAAGGACCAGTGGAAATGGTATGGATACGTCAGATCCAAGGCTTGGTGCTTTGAGATCTCCAGCAAGCATTTTGCAATCACCGGGAAGGCTGCCCCCAAGAGGACCTCATATGAACTTTGGT]


>consensus_7758#0 GAGAGCCTTCTGTTGATCTTTCTAGGGACGCTTGGGTTCGAATGAAGCTGGGTATATATA AAGGTGACCTTGCTAAGGTTGTCGATGTTGACAATGTGCGCCAAAGGGTTACTGTGAAGC TGATCCCTAGAATAGATTTACAAGCTTTGGCTAGTAAACTGGAAGGGAGGGAGGCTGTGA AGAAGAAAGCATTTGTCCCACCACCACGTTTCTTTAATATTGATGAGGCCAGGGAGATGC ACATTCGTGTGGAACGGAGGAGGGATAAAGACTCTGGGGAGTACTTTGAGATGATTGATG GCTTAATGTTCAAAGATGGCTTCTTATACAAAACTGTCTCAATAAAATCAATCAGCACAC AGAATATTCAGCCATCATTCGATGAACTGGAGAAGTTCAGAAAACCTGGTGATGACATGA ATGGGGATATGTCTAGCTTGTCTACGCTTTTTGCTAATAGGAAAAAGGGGCACTTTATGA AGGGTGATGCTGTCATTGTTATCAAAGGTGATCTGAAAAATTTGGAGGGTTGGGTTGAGA AAGTAGAGGATGAGACTGTTCACATCAGACCAAAAATATCTGATCTACCGAAAACGTTAG CCTTCAATGAGAAAGAGCTTTGCAAGTATTTTAAACCCGGAGATCATGTTAAAGTGGTAT CAGGTGTTCAAGAAGGTGCAACAGGCATGGTTGTTAAAGTGGAAGGGCATGTCTTGATAA TTTTATCTGACACGACAAAAGAACATATACGTGTGTTTGCGGACCATGTTGTGGAGAGCT CTGAGATCACAACGGGAATAACCAGAATTGGTGATTATGAGCTGCATGATCTTGCTCTTT TGGACAACTTGTCATTTGGGGTTATTATAAGGGTGGAAACTGACGCATTTCAGGTTCTGA AAGGAGTACCGGATAGACCAGAACTTGTCCTAGTAAAATTAAGAGAAATAAAAAGCAAGA TTGATCGCCGAACATCCGCAAAAGATCGGTCCAACAATATGATTTCATCTAAGGATGTTG TCCGAGTAGTTGAGGGAGCATGCAAGGGAAAACAAGGACCAGTGGAAATGGTATGGATAC GTCAGATCCAAGGCTTGGTGCTTTGAGATCTCCAGCAAGCATTTTGCAATCACCGGGAAG GCTGCCCCCAAGAGGACCTCATATGAACTTTGGT



consensusID : consensus_7758#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 640
fasta sequence
                              [GTATCACGTGTTCAAGAAGGTGCAACAGGCATGGTTGTTAAAGTGGAAGGGCATGTCTTGATAATTTTATCTGACACGACAAAAGAACATATACGTGTGTTTGCGGACCATGTTGTGGAGAGCTCTGAGATCACAACGGGAATAACCAGAATTGGTGATTATGAGCTGCATGATCTTGTTCTTTTGGACAACTTGTCATTTGGGGTTATTATAAGGGTGGAAACTGAGGCATTTCAGGTTCTGAAAGGAGTACCGGATAGACCAGAAGTTGTCCTAGTAAAATTAAGAGAAATAAAAAGCAAGATTGATCGCCGAACATCCGCAAAAGATCGGTCCAACAATATGATTTCATCTAAGGATGTTGTCCGAGTAGTTGAGGGAGCATGCAAGGGAAAACAAGGACCAGTGGAACACATACATAAGGGGATATTATTTATCTATGATAGACACCACCTCGAGCATGCAGGCTTTATTTGTGCAAAAGCACAGTCCTGTCTTCTTGTTGGTGGATCAGCTGGTGGACGTCGTGGAAATGGTATGGATACGTCAGATCCAAGGCTTGGTGCTTTGAGATCTCCAGCAAGCATTTTGCAATCACCGGGAAGGCTGCCCCCAAGAGGACCTCATATGAACTTTGGTG]

[+] EMBL CB676424             [GTATCACGTGTTCAAGAAGGTGCAACAGGCATGGTTGTTAAAGTGGAAGGGCATGTCTTGATAATTTTATCTGACACGACAAAAGAACATATACGTGTGTTTGCGGACCATGTTGTGGAGAGCTCTGAGATCACAACGGGAATAACCAGAATTGGTGATTATGAGCTGCATGATCTTGTTCTTTTGGACAACTTGTCATTTGGGGTTATTATAAGGGTGGAAACTGAGGCATTTCAGGTTCTGAAAGGAGTACCGGATAGACCAGAAGTTGTCCTAGTAAAATTAAGAGAAATAAAAAGCAAGATTGATCGCCGAACATCCGCAAAAGATCGGTCCAACAATATGATTTCATCTAAGGATGTTGTCCGAGTAGTTGAGGGAGCATGCAAGGGAAAACAAGGACCAGTGGAACACATACATAAGGGGATATTATTTATCTATGATAGACACCACCTCGAGCATGCAGGCTTTATTTGTGCAAAAGCACAGTCCTGTCTTCTTGTTGGTGGATCAGCTGGTGGACGTCGTGGAAATGGTATGGATACGTCAGATCCAAGGCTTGGTGCTTTGAGATCTCCAGCAAGCATTTTGCAATCACCGGGAAGGCTGCCCCCAAGAGGACCTCATATGAACTTTGGT ]
[-] EMBL CA923299             [                                                                                                                                                                                                                                                                    cCCAGAAGTTGTCCTAGTAAAATTAAGAGAAATAAAAAGCAAGATTGATCGCCGAACATCCGCAAAAGATCGGTCCAACAATATGATTTCATCTAAGGATGTTGTCCGAGTAGTTGAGGGAGCATGCAAGGGAAAACAAGGACCAGTGGAACACATACATAAGGGGATATTATTTATCTATGATAGACACCACCTCGAGCATGCAGGCTTTATTTGTGCAGAAGCACAGTCCTGTCTTCTTGTTGGTGGATCAGCTGGTGGACGTCGTGGAAATGGTATGGATACGTCAGATCCAAGGCTTGGTGCTTTGAGATCTCCAGCAAGCATTTTGCAATCACCGGGAAGGCTGCCCCCAAGAGGACCTCATATGAACTTTGGTG]


>consensus_7758#1 GTATCACGTGTTCAAGAAGGTGCAACAGGCATGGTTGTTAAAGTGGAAGGGCATGTCTTG ATAATTTTATCTGACACGACAAAAGAACATATACGTGTGTTTGCGGACCATGTTGTGGAG AGCTCTGAGATCACAACGGGAATAACCAGAATTGGTGATTATGAGCTGCATGATCTTGTT CTTTTGGACAACTTGTCATTTGGGGTTATTATAAGGGTGGAAACTGAGGCATTTCAGGTT CTGAAAGGAGTACCGGATAGACCAGAAGTTGTCCTAGTAAAATTAAGAGAAATAAAAAGC AAGATTGATCGCCGAACATCCGCAAAAGATCGGTCCAACAATATGATTTCATCTAAGGAT GTTGTCCGAGTAGTTGAGGGAGCATGCAAGGGAAAACAAGGACCAGTGGAACACATACAT AAGGGGATATTATTTATCTATGATAGACACCACCTCGAGCATGCAGGCTTTATTTGTGCA AAAGCACAGTCCTGTCTTCTTGTTGGTGGATCAGCTGGTGGACGTCGTGGAAATGGTATG GATACGTCAGATCCAAGGCTTGGTGCTTTGAGATCTCCAGCAAGCATTTTGCAATCACCG GGAAGGCTGCCCCCAAGAGGACCTCATATGAACTTTGGTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7758#0      GAGAGCCTTCTGTTGATCTTTCTAGGGACGCTTGGGTTCGAATGAAGCTGGGTATATATA 60
consensus_7758#1      ------------------------------------------------------------
                                                                                  

consensus_7758#0      AAGGTGACCTTGCTAAGGTTGTCGATGTTGACAATGTGCGCCAAAGGGTTACTGTGAAGC 120
consensus_7758#1      ------------------------------------------------------------
                                                                                  

consensus_7758#0      TGATCCCTAGAATAGATTTACAAGCTTTGGCTAGTAAACTGGAAGGGAGGGAGGCTGTGA 180
consensus_7758#1      ------------------------------------------------------------
                                                                                  

consensus_7758#0      AGAAGAAAGCATTTGTCCCACCACCACGTTTCTTTAATATTGATGAGGCCAGGGAGATGC 240
consensus_7758#1      ------------------------------------------------------------
                                                                                  

consensus_7758#0      ACATTCGTGTGGAACGGAGGAGGGATAAAGACTCTGGGGAGTACTTTGAGATGATTGATG 300
consensus_7758#1      ------------------------------------------------------------
                                                                                  

consensus_7758#0      GCTTAATGTTCAAAGATGGCTTCTTATACAAAACTGTCTCAATAAAATCAATCAGCACAC 360
consensus_7758#1      ------------------------------------------------------------
                                                                                  

consensus_7758#0      AGAATATTCAGCCATCATTCGATGAACTGGAGAAGTTCAGAAAACCTGGTGATGACATGA 420
consensus_7758#1      ------------------------------------------------------------
                                                                                  

consensus_7758#0      ATGGGGATATGTCTAGCTTGTCTACGCTTTTTGCTAATAGGAAAAAGGGGCACTTTATGA 480
consensus_7758#1      ------------------------------------------------------------
                                                                                  

consensus_7758#0      AGGGTGATGCTGTCATTGTTATCAAAGGTGATCTGAAAAATTTGGAGGGTTGGGTTGAGA 540
consensus_7758#1      ------------------------------------------------------------
                                                                                  

consensus_7758#0      AAGTAGAGGATGAGACTGTTCACATCAGACCAAAAATATCTGATCTACCGAAAACGTTAG 600
consensus_7758#1      ------------------------------------------------------------
                                                                                  

consensus_7758#0      CCTTCAATGAGAAAGAGCTTTGCAAGTATTTTAAACCCGGAGATCATGTTAAAGTGGTAT 660
consensus_7758#1      --------------------------------------------------------GTAT 4
                                                                              ****

consensus_7758#0      CAGGTGTTCAAGAAGGTGCAACAGGCATGGTTGTTAAAGTGGAAGGGCATGTCTTGATAA 720
consensus_7758#1      CACGTGTTCAAGAAGGTGCAACAGGCATGGTTGTTAAAGTGGAAGGGCATGTCTTGATAA 64
                      ** *********************************************************

consensus_7758#0      TTTTATCTGACACGACAAAAGAACATATACGTGTGTTTGCGGACCATGTTGTGGAGAGCT 780
consensus_7758#1      TTTTATCTGACACGACAAAAGAACATATACGTGTGTTTGCGGACCATGTTGTGGAGAGCT 124
                      ************************************************************

consensus_7758#0      CTGAGATCACAACGGGAATAACCAGAATTGGTGATTATGAGCTGCATGATCTTGCTCTTT 840
consensus_7758#1      CTGAGATCACAACGGGAATAACCAGAATTGGTGATTATGAGCTGCATGATCTTGTTCTTT 184
                      ****************************************************** *****

consensus_7758#0      TGGACAACTTGTCATTTGGGGTTATTATAAGGGTGGAAACTGACGCATTTCAGGTTCTGA 900
consensus_7758#1      TGGACAACTTGTCATTTGGGGTTATTATAAGGGTGGAAACTGAGGCATTTCAGGTTCTGA 244
                      ******************************************* ****************

consensus_7758#0      AAGGAGTACCGGATAGACCAGAACTTGTCCTAGTAAAATTAAGAGAAATAAAAAGCAAGA 960
consensus_7758#1      AAGGAGTACCGGATAGACCAGAAGTTGTCCTAGTAAAATTAAGAGAAATAAAAAGCAAGA 304
                      *********************** ************************************

consensus_7758#0      TTGATCGCCGAACATCCGCAAAAGATCGGTCCAACAATATGATTTCATCTAAGGATGTTG 1020
consensus_7758#1      TTGATCGCCGAACATCCGCAAAAGATCGGTCCAACAATATGATTTCATCTAAGGATGTTG 364
                      ************************************************************

consensus_7758#0      TCCGAGTAGTTGAGGGAGCATGCAAGGGAAAACAAGGACCAGTGGAA------------- 1067
consensus_7758#1      TCCGAGTAGTTGAGGGAGCATGCAAGGGAAAACAAGGACCAGTGGAACACATACATAAGG 424
                      ***********************************************             

consensus_7758#0      ------------------------------------------------------------
consensus_7758#1      GGATATTATTTATCTATGATAGACACCACCTCGAGCATGCAGGCTTTATTTGTGCAAAAG 484
                                                                                  

consensus_7758#0      ------------------------------------------------ATGGTATGGATA 1079
consensus_7758#1      CACAGTCCTGTCTTCTTGTTGGTGGATCAGCTGGTGGACGTCGTGGAAATGGTATGGATA 544
                                                                      ************

consensus_7758#0      CGTCAGATCCAAGGCTTGGTGCTTTGAGATCTCCAGCAAGCATTTTGCAATCACCGGGAA 1139
consensus_7758#1      CGTCAGATCCAAGGCTTGGTGCTTTGAGATCTCCAGCAAGCATTTTGCAATCACCGGGAA 604
                      ************************************************************

consensus_7758#0      GGCTGCCCCCAAGAGGACCTCATATGAACTTTGGT- 1174
consensus_7758#1      GGCTGCCCCCAAGAGGACCTCATATGAACTTTGGTG 640
                      *********************************** 




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)