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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7764#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 897 fasta sequence
[ATTTTCAACGCTGTTGCTGCTACAGTAATCCCATCTCGACGAGTGTGTGCACACGCGTTGGGAGAGTAGGCCTCCGAAACCACGCGTTGGGAGAGTAGGCCTCCAAAACTACGCGTTGCTGCGACGTTTGCACGGACGGGCGTGCGATCAGGTTTTTGGGTAGCGCAAGGCGCGACTACTCACTGTTCGTCAACATCTACTTCACCTTCACCAATATGTCAAACACTGGAGACAACGGCAACACTGGATACAAGGAGAAGGAGGCTCCCGTCAATACCAACGGAGGCAATACTGCCTCAAACTCCAGCGGATGACCATTCTTGGGGTGGAGTTCTACTTCAGCGACAGCAACCTCCCGCGCGATAAGTTCCTGAGGGAGACGGTCGAGCAGCGCGAAGATGGATGTAAATGATCTCTCGCGCAGTACATTTTCCACGCGGATTGCTTTTCTCCGGCGCGATGATTGAGTGCTGAACTTAGCGTCTTTTTTTCTTCTTCTCATTTTGTTGGAAATGTGCAGTGGTAAGCTTGGCTTTGATATGCTCTTTCGCGCGGATGAAGTCGCACCTCGGGCTGGACGCCGCCGTGAAGCCCGAAACTGTGCCAGAGGAGACAGTGCTCGCAGTAGCAGAGGTGCTACGTCGTTCCCAGATGCTTCGTATCTCGGAGGATGGAAAAATGGTTGGTCGAGCTAGTGAGCTGTTGAAGGCAGATGAAATCATCAAGCAAGTGGACTCAAGGACAGTTGCTGCGTCACCATTGCCTTACAATGTAGAGCTGGAAGATGTCCAATCTTTCTTTGCGCAATATGCAAAGGTAAATAGTGTCAGGCTACCACGCCATATCGCAAACAAAAAACACTTCTGTGGCACTGCCTTAGTTGAATTTTCAGAAGAC]
[+] EMBL CB632932 [ATTTTCAACGCTGTTGCTGCTACAGTAATCCCATCTCGACGAGTGTGTGCACACGCGTTGGGAGAGTAGGCCTCCGAAACCACGCGTTGGGAGAGTAGGCCTCCAAAACTACGCGTTGCTGCGACGTTTGCACGGACGGGCGTGCGATCAGGTTTTTGGGTAGCGCAAGGCGCGACTACTCACTGTTCGTCAACATCTACTTCACCTTCACCAATATGTCAAACACTGGAGACAACGGCAACACTGGATACAAGGAGAAGGAGGCTCCCGTCAATACCAACGGAGGCAATACTGCCTCAAACTCCAGCGGATGACCATTCTTGGGGTGGAGTTCTACTTCAGCGACAGCAACCTCCCGCGCGATAAGTTCCTGAGGGAGACGGTCGAGCAGCGCGAAGATGGATGTAAATGATCTCTCGCGCAGTACATTTTCCACGCGGATTGCTTTTCTCCGGCGCGATGATTGAGTGCTGAACTTAGCGTCTTTTTTTCTTCTTCTCATTTTGTTGGAAATGTGCAGTGGTAAGCTTGGCTTTGATATGCTCTTTCGCGCGGATGAAGTCGCACCTCGGGCTGGACGCCGCCGTGAAGCCCGAAACTGTGCCAGAGGAGACAGTGCTCGCAGTAGCAGAGGTGCTACGTCGTTCCCAGATGCTTCGTATCTCGGAGGATGGAAAAATGGTTGGTCGAGCTAGTGAGCTGTTGAAGGCAGATGAAATCATCAAGCAAGTGGACTCAAGGACAGTTGCTGCGTCACCATTGCCTTACAATGTAGAGCTGGAAGATGTCC ]
[+] EMBL CA752966 [ CCGTGAAGCCCGAAACTGTGCCAGAGGAGACAGTGCTCGCAGTAGCAGAGGTGCTACGTCGTTCCCAGATGCTTCGTATCTCGGAGGATGGAAAAATGGTTGGTCGAGCTAGTGAGCTGTTGAAGGCAGATGAAATCATCAAGCAAGTGGACTCAAGGACAGTTGCTGCGTCACCATTGCCTTACAATGTAAAGCTGGAAGATGTCCAATCTTTCTTTGCGCAATATGCAAAGGTAAATAGTGTCAGGCTACCACGCCATATCGCAAACAAAAAACACTTCTGTGGCACTGCCTTAGTTGAATTTTCAGAAGAC]
consensusID : consensus_7764#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 778 fasta sequence
[TCTCATGAGCCTTGAAATTTGGTGGGGATTGTTAGATTTAATTGGGTAATTAATCCATTTAAATCAATTAAATCAAATAAATTCCAAGGCTCATTATGCTAGGAATTCATGTGAATTCATTTTTCTATGGGATATCAATGGGATGAAGAGTTTTGAGAATTAATCCATTTGATTAAGGAATTGGTAACTTATATCAATTAATCCTAATTGATGGATGGTTGATGGTTGTGTAGTGGAGGATGGTTCATGGCTAGTTGATGACAATTAGTTGCTCTATTCCTCTTCCTATTCCATTGGTAACTTACATCAATTACTCTTAATTGATTGTTGGTTGATGGTTGTGTAGTGGAGGATGGTTCATGGCTAGTTGATGACAATTAGTTGCTCCATTCCTCTTCCTATTCCATGACTCTTACTCTTCATCTTCCATTCCTCTTATAAAATGAGAATGGATTTGATTTCCCGCGAGAAAAAAGAAGACACACTTTCATCCATTTTCCAAAGCTGTTGTTGCTACGGTAATCCCATCCCGACGAGTGTGTGCACACGCGTTGGGAGAGTAGGCCTCCGAAACCACGCGTTGCTGCGACGTTTGCACAGACGGGCAGGCGATCAAGTTTTTGGGGAGCGCAAGGCGCGACTACTCACTGTTCGTCAACATCTACTTCATCTTCACCAACATGTCGAACACTGGAGACAAGGAGAAGGAGACTCCTGTCAACACCAACGGAGGCAATACTGCCTCAAACTCCAGCGGAGGACAATTCTTAGGGTATAA]
[-] EMBL CB632064 [TCTCATGAGCCTTGAAATTTGGTGGGGATTGTTAGATTTAATTGGGTAATTAATCCATTTAAATCAATTAAATCAAATAAATTCCAAGGCTCATTATGCTAGGAATTCATGTGAATTCATTTTTCTATGGGATATCAATGGGATGAAGAGTTTTGAGAATTAATCCATTTGATTAAGGAATTGGTAACTTATATCAATTAATCCTAATTGATGGATGGTTGATGGTTGTGTAGTGGAGGATGGTTCATGGCTAGTTGATGACAATTAGTTGCTCTATTCCTCTTCCTATTCCATTGGTAACTTACATCAATTACTCTTAATTGATTGTTGGTTGATGGTTGTGTAGTGGAGGATGGTTCATGGCTAGTTGATGACAATTAGTTGCTCCATTCCTCTTCCTATTCCATGACTCTTACTCTTCATCTTCCATTCCTCTTATAAAATGAGAATGGATTTGATTTCCCGCGAGAAAAAAGAAGACACACTTTCATCCATTTTCCAAAGCTGTTGTTGCTACGGTAATCCCATCCCGACGAGTGTGTGCACACGCGTTGGGAGAGTAGGCCTCCGAAACCACGCGTTGCTGCGACGTTTGCACAGACGGGCAGGCGATCAAGTTTTTGGGGAGCGCAAGGCGCGACTACTCACTGTTCGTCAACATCTACTTCATCTTCACCAACATGTCGAACACTGGAGACAAGGAGAAGGAGACTCCTGTCAACACCAACGGAGGCAATACTGCCTCAAACTCCAGCGGAGGACAATTCTTAGGGTATAA]
[+] EMBL OSC103641 [ ccgGACAATTAGTTGCTCTATTCCTCTTCCTATTCCATTGGTAACTTACATCAATTACTCTTAATTGATTGTTGGTTGATGGTTGTGTAGTGGAGGATGGTTCATGGCTAGTTGATGACAATTAGTTGCTCCATTCCTCTTCCTATTCCATGACTCTTACTCTTCATCTTCCATTTCTCTTATAAAATGAGAATGGATTTGATCTCCCGCGAG AAGAAGAAGACACACTTTCATCCATTTTAAAAAGCTGTTGCTGCTACGGTAATCCCATC ]
consensusID : consensus_7764#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 403 fasta sequence
[CGACANAACCTCCCGCGCGATAAGTTCCTGAGGGAGNCGGTCGAGCAGCGCGAAGATGGATTGGTAAGCTTGGCTTTNATATGCTCTTTCGCGCGGAAGAAGTCGCACCTCGGGCTGGACGCCGCCGTGAAGCCCGAAACTNTGCCAGAGGAGACAGTGCTCGCAGTAGCAGAGGTGCTACGTCGTTCCCAGATGCTTCGTATCTCGGAGGATGGAAAAATGGTTGGTCGAGCTAGTGAGCTGTTGAAGGCAGATGAAATCATCAAGCAAGTGGACTCAAGGACAGTTGCTGCGTCACCATTGCCTTACAAATGTAAAAGCTGGAAGATGTCCAATCCTTTCTTTGCGGCAATATGCAAAAGGTAAATAGTGTCAGGCTACCACGCCATATCTTAAAACAAAA]
[+] EMBL OSC385 [CGACANAACCTCCCGCGCGATAAGTTCCTGAGGGAGNCGGTCGAGCAGCGCGAAGATGGATTGGTAAGCTTGGCTTTNATATGCTCTTTCGCGCGGAAGAAGTCGCACCTCGGGCTGGACGCCGCCGTGAAGCCCGAAACTNTGCCAGAGGAGACAGTGCTCGCAGTAGCAGAGGTGCTACGTCGTTCCCAGATGCTTCGTATCTCGGAGGATGGAAAAATGGTTGGTCGAGCTAGTGAGCTGTTGAAGGCAGATGAAATCATCAAGCAAGTGGACTCAAGGACAGTTGCTGCGTCACCATTGCCTTACAAATGTAAAAGCTGGAAGATGTCCAATCCTTTCTTTGCGGCAATATGCAAAAGGTAAATAGTGTCAGGCTACCACGCCATATCTTAAAACAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7764#0 ATTTTCAACGCTGTTGCTGCTACAGTAATCCCATCTCGACGAGTGTGTGCACACGCGTTG 60
consensus_7764#2 ------------------------------------------------------------
consensus_7764#1 ------------------------------------------------------------
consensus_7764#0 GGAGAGTAGGCCTCCGAAACCACGCGTTGGGAGAGTAGGCCTCCAAAACTACGCGTTGCT 120
consensus_7764#2 ------------------------------------------------------------
consensus_7764#1 -----------------------------TCTCATGAGCCTTGAAATTTGGTGGGGATTG 31
consensus_7764#0 GCGACGTTTGCACGGACGGGCGTGCGATCAGGTTTTTGGGTAGCGCAAGGCGCGACTACT 180
consensus_7764#2 ------------------------------------------------------------
consensus_7764#1 TTAGATTTAATTGGGTAATTAATCCATTTAAATCAATTAAATCAAATAAATTCCAAGGCT 91
consensus_7764#0 CACTGTTCGTCAACATCTACTTCACCTTCACCAATATGTCAAACACTGGAGACAACGGCA 240
consensus_7764#2 ------------------------------------------------------------
consensus_7764#1 CATTATGCTAGGAATTCATGTGAATTCATTTTTCTATGGGATATCAATGGGATGAAGAGT 151
consensus_7764#0 ACACTGGATACAAGGAGAAGGAGGCTCCCGTCAATACCAACGGAGGCAATACTGCCTCAA 300
consensus_7764#2 ------------------------------------------------------------
consensus_7764#1 TTTGAGAATTAATCCATTTGATTAAGGAATTGGTAACTTATATCAATTAATCCTAATTGA 211
consensus_7764#0 ACTCCAGCGGATGACCATTCTTGGGGTGGAGTTCTACTTCAGCGACAGCAACCTCCCGCG 360
consensus_7764#2 ------------------------------------------------------------
consensus_7764#1 TGGATGGTTGATGGTTGTGTAGTGGAGGATGGTTCATGGCTAGTTGATGACAATTAGTTG 271
consensus_7764#0 CGATAAGTTCCTGAGGGAGACGGTCGAGCAGCGCGAAGATGGATGTAAATGATCTCTCGC 420
consensus_7764#2 ------------------------------------------------------------
consensus_7764#1 CTCTATTCCTCTTCCTATTCCATTGGTAACTTACATCAATTACTCTTAATTGATTGTTGG 331
consensus_7764#0 GCAGTACATTTTCCACGCGGATTGCTTTTCTCCGGCGCGATGATTGAGTGCTGAACTTAG 480
consensus_7764#2 -------------------------------------CGAC-ANAACCTCCCGCGCGATA 22
consensus_7764#1 TTGATGGTTGTGTAGTGGAGGATGGTTCATGGCTAGTTGATGACAATTAGTTGCTCCATT 391
** * * *
consensus_7764#0 CGT--CTTTTTTTCT-TCTTCTCATTTTGTTGGAAATGTGCAG-TGGTAAGCTTGGCTTT 536
consensus_7764#2 AGT--TCCTGAGGGA-GNCGGTCGAGCAGC-GCGAAGATGGAT-TGGTAAGCTTGGCTTT 77
consensus_7764#1 CCTCTTCCTATTCCATGACTCTTACTCTTCATCTTCCATTCCTCTTATAAAATGAGAATG 451
* * * * * *** * * *
consensus_7764#0 GATATGCTCTTTCGCGCGGAT---GAAGTCGCACCTCGGGCTGGACGCC---GCCGTGAA 590
consensus_7764#2 NATATGCTCTTTCGCGCGGAA---GAAGTCGCACCTCGGGCTGGACGCC---GCCGTGAA 131
consensus_7764#1 GATTTGATTTCCCGCGAGAAAAAAGAAGACACACTTTCATCCATTTTCCAAAGCTGTTGT 511
** ** * * **** * * **** * *** * * ** ** **
consensus_7764#0 GCCCGAAACTGTGCCAGAGGAGACAGTGCTCGCAGTAGCAGAGGTGCTACGTCGTTCCCA 650
consensus_7764#2 GCCCGAAACTNTGCCAGAGGAGACAGTGCTCGCAGTAGCAGAGGTGCTACGTCGTTCCCA 191
consensus_7764#1 TGCTACGGTAATCCCATCCCGACGAGTGTGTGCACACGCGTTGGGA--GAGTAGGCCTCC 569
* * *** **** *** ** ** ** * * *
consensus_7764#0 GATGCTTCGTATCTCGGAGGATGGAAAAATGGTTGGTCGAGCTAGTGAGCTGTTGAAGGC 710
consensus_7764#2 GATGCTTCGTATCTCGGAGGATGGAAAAATGGTTGGTCGAGCTAGTGAGCTGTTGAAGGC 251
consensus_7764#1 GAAACCACGCGTTGCTGCG-ACGTTTGCACAGACGGGCAGGCGATCAAGTTTTTGGGGAG 628
** * ** * * * * * * * * ** * ** * ** * *** *
consensus_7764#0 AGATGAAATCATCAAGCAAGTGGACTCAAGGACAGTTGCTGCGTCACCATTGCCTTAC-- 768
consensus_7764#2 AGATGAAATCATCAAGCAAGTGGACTCAAGGACAGTTGCTGCGTCACCATTGCCTTAC-- 309
consensus_7764#1 CGCAAGGCGCGACTACTCACTG--TTCGTCAACATCTACTTCATCTTCACCAACATGTCG 686
* * * * * ** ** *** * ** * ** ** * *
consensus_7764#0 AA-TGTAGA-GCTGGAAGATGTCCAATC-TTTCTTTGCG-CAATATGCAAA-GGTAAATA 823
consensus_7764#2 AAATGTAAAAGCTGGAAGATGTCCAATCCTTTCTTTGCGGCAATATGCAAAAGGTAAATA 369
consensus_7764#1 AACACTGGAGACAAGGAGAAGGAGACTCCTGTCAACACCAACGGAGGCAATACTGCCTCA 746
** * * * * *** * * ** * ** * * **** *
consensus_7764#0 GTGTCAGGCTACCACGCCATATCGCAAACAAAAAACACTTCTGTGGCACTGCCTTAGTTG 883
consensus_7764#2 GTGTCAGGCTACCACGCCATATCTTAAAACAAAA-------------------------- 403
consensus_7764#1 AACTCCAGCGG--AGGACAATTCTTAGGGTATAA-------------------------- 778
** ** * * ** ** * * **
consensus_7764#0 AATTTTCAGAAGAC 897
consensus_7764#2 --------------
consensus_7764#1 --------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||