These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7766#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1009 fasta sequence [TGACGATTGCCATGGTTGATCTGATCCACGAGACGGACGACGCGATGGCCGAGGCGGAGCTGCTGCTGGAGCGCAGCCGGGCGATCACCCTGAACGGCCGAGACAAGCGAGGCCGCGCCCTCGTCAGGATCGTCGGCAAGTACTTCCCCGGTAAGCTGAGCTCGGCCTCGCTCGTCAGATCCCCGCAATTCCGATGCTTTTGCCGGCGGAAAAGTGACCCCGTTTCCTTTGTCGCGGCAGCGCGCGCGCTGGGCGGGCGGGCGGAGGCGGCGTTGAGGGGGTACGTGCGGAGGCGCGTGCTCCCGGAGATCGGGGAGCGGGAGTTCGTGGTCGCGTACGTCCACTCCCTCGTCGACCGCGGCGACAACTTCCCCGGCGTCGCAGCGATCCGCGCGGCGTACGAGGCGCTGCCTGCCGCGGCCAAGGAGCGGCTGCGCGCGGTGTACTTCGTGCACCCGGGATTCCAGGCCCGCCTCTTCTTCGCCACCTTGGGGCGATTCCTCTTCAGCTCCGGGTATGTACATACAACGAATCACTCCGTGTGTGCTGCACTACGATTCGTGGGTGAGGCGCTGGTGTTTACCGTGGTTTCCTTGGAATTTTGGATCTTGCAGGCTGTACGAGAAGCTGAGGTACATGAGCAGGCTCGAGTACCTGTGGGAGCACGTGAGCAAGGGGGAGATGGAGGTCCCGGAATGCGCGCGCCGGCATGACGAGGAGCTCGAGCGCCGCCCGCTCATGGACTACGGCATCGAGGCTACTGACCGCCGGTGCATGTTCGACGCCGCGTCCATGGACACCTCGGCGTCCCTGCACTCGCTCCGGTGCATCTCGTAATCGTGGTGGCCGCTCGACTGTAGCATCCGTAGCTGGCCTCGCCCCGGTCCTATATTCGTAGCTAGCGAAGGCACTGCCGCACTGTCGTAGTTTGCAGGCCCTGTTGTTCTTCGTTCCATCTGTACAAAATAGTAGTATTTGTGGAAGTAAAAGAGATAATAAAGAGAAACAG] [+] EMBL AK060958 [TGACGATTGCCATGGTTGATCTGATCCACGAGACGGACGACGCGATGGCCGAGGCGGAGCTGCTGCTGGAGCGCAGCCGGGCGATCACCCTGAACGGCCGAGACAAGCGAGGCCGCGCCCTCGTCAGGATCGTCGGCAAGTACTTCCCCGGTAAGCTGAGCTCGGCCTCGCTCGTCAGATCCCCGCAATTCCGATGCTTTTGCCGGCGGAAAAGTGACCCCGTTTCCTTTGTCGCGGCAGCGCGCGCGCTGGGCGGGCGGGCGGAGGCGGCGTTGAGGGGGTACGTGCGGAGGCGCGTGCTCCCGGAGATCGGGGAGCGGGAGTTCGTGGTCGCGTACGTCCACTCCCTCGTCGACCGCGGCGACAACTTCCCCGGCGTCGCAGCGATCCGCGCGGCGTACGAGGCGCTGCCTGCCGCGGCCAAGGAGCGGCTGCGCGCGGTGTACTTCGTGCACCCGGGATTCCAGGCCCGCCTCTTCTTCGCCACCTTGGGGCGATTCCTCTTCAGCTCCGGGTATGTACATACAACGAATCACTCCGTGTGTGCTGCACTACGATTCGTGGGTGAGGCGCTGGTGTTTACCGTGGTTTCCTTGGAATTTTGGATCTTGCAGGCTGTACGAGAAGCTGAGGTACATGAGCAGGCTCGAGTACCTGTGGGAGCACGTGAGCAAGGGGGAGATGGAGGTCCCGGAATGCGCGCGCCGGCATGACGAGGAGCTCGAGCGCCGCCCGCTCATGGACTACGGCATCGAGGCTACTGACCGCCGGTGCATGTTCGACGCCGCGTCCATGGACACCTCGGCGTCCCTGCACTCGCTCCGGTGCATCTCGTAATCGTGGTGGCCGCTCGACTGTAGCATCCGTAGCTGGCCTCGCCCCGGTCCTATATTCGTAGCTAGCGAAGGCACTGCCGCACTGTCGTAGTTTGCAGGCCCTGTTGTTCTTCGTTCCATCTGTACAAAATAGTAGTATTTGTGGAAGTAAAAGAGATAATAAAGAGAAACAG] consensusID : consensus_7766#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 869 fasta sequence [GCCCCCCCACAAGAATTGGATAAGCTCGATTGACGATTGCCATGGTTGATCTGATCCACGAGACGGACGACGCGATGGCCGAGGCGGAGCTGCTGCTGGAGCGCAGCCGGGCGATCACCCTGAACGGCCGAGACAAGCGAGGCCGCGCCCTCGTCAGGATCGTCGGCAAGTACTTCCCCGCGCGCGCGCTGGGCGGGCGGGCGGAGGCGGCGTTGAGGGGGTACGTGCGGAGGCGCGTGCT-CCCGGAGATCGGGGAGCGGGAGTTCGTGGTCGTGTACGTCCACTCCCTCGTCGACCGCGGCGACAACTTCCCCGGCGTCGCAGCGATCCGCGCGGCGTACGAGGCGCTGCCTGCCGCGGCCAAGGAGCGGCTGCGCGCGGTGTACTTCGTGCACCCGGGATTCCAGGCCCGCCTCTTCTTCGCCACCTTGGGGCGATTCCTCTTCAGCTCCGGGCTGTACGAGAAGCTGAGGTACATGAGCAGGCTCGAGTACCTGTGGGAGCACGTGAGCAAGGGGGAGATGGAGGTCCCGGAATGCGCGCGCCGGCATGACGAGGAGCTCGAGCGCCGCCCGCTCATGGACTACGGCATCGAGGCTACTGACCGCCGGTGCATGTTCGACGCCGCGTCCATGGACACCTCGGCGTCCCTGCACTCGCTCCGGTGCATCTCGTAATCGTGGTGGCCGCTCGACTGTAGCATCCGTAGCTGGCCTCGCCCCGGTCCTATATTCGTAGCTAGCGAAGGCACTGCCGCACTGTCGTAGTTTGCAGGCCCTGTTGTTCTTCGTTCCATCTGTACAAAATAGTAGTATTTGTGGAAGTAAAAGAGATAATAAAGAGAAACAGTTTGAAATGCTTAAAAAAAA] [+] EMBL AK071867 [GCCCCCCCACAAGAATTGGATAAGCTCGATTGACGATTGCCATGGTTGATCTGATCCACGAGACGGACGACGCGATGGCCGAGGCGGAGCTGCTGCTGGAGCGCAGCCGGGCGATCACCCTGAACGGCCGAGACAAGCGAGGCCGCGCCCTCGTCAGGATCGTCGGCAAGTACTTCCCCGCGCGCGCGCTGGGCGGGCGGGCGGAGGCGGCGTTGAGGGGGTACGTGCGGAGGCGCGTGCT CCCGGAGATCGGGGAGCGGGAGTTCGTGGTCGTGTACGTCCACTCCCTCGTCGACCGCGGCGACAACTTCCCCGGCGTCGCAGCGATCCGCGCGGCGTACGAGGCGCTGCCTGCCGCGGCCAAGGAGCGGCTGCGCGCGGTGTACTTCGTGCACCCGGGATTCCAGGCCCGCCTCTTCTTCGCCACCTTGGGGCGATTCCTCTTCAGCTCCGGGCTGTACGAGAAGCTGAGGTACATGAGCAGGCTCGAGTACCTGTGGGAGCACGTGAGCAAGGGGGAGATGGAGGTCCCGGAATGCGCGCGCCGGCATGACGAGGAGCTCGAGCGCCGCCCGCTCATGGACTACGGCATCGAGGCTACTGACCGCCGGTGCATGTTCGACGCCGCGTCCATGGACACCTCGGCGTCCCTGCACTCGCTCCGGTGCATCTCGTAATCGTGGTGGCCGCTCGACTGTAGCATCCGTAGCTGGCCTCGCCCCGGTCCTATATTCGTAGCTAGCGAAGGCACTGCCGCACTGTCGTAGTTTGCAGGCCCTGTTGTTCTTCGTTCCATCTGTACAAAATAGTAGTATTTGTGGAAGTAAAAGAGATAATAAAGAG ] [+] EMBL CF324733 [ AAGAATTGGATAAGCTCGATTGACGATTGCCATGGTTGATCTGATCCACGAGACGGACGACGCGATGGCCGAGGCGGAGCTGCTGCTGGAGCGCAGCCGGGCGATCACCCTGAACGGCCGAGACAAGCGAGGCCGCGCCCTCGTCAGGATCGTCGGCAAGTACTTCCCCGCGCGCGCGCTGGGCGGGCGGGCGGAGGCGGCGTTGAGGGGGTACGTGCGGAGGCGCGTGCT CCCGGAGATCGGGGAGCGGGAGTTCGTGGTCGTGTACGTCCACTCCCTCGTCGACCGCGGCGACAACTTCCCCGGCGTCGCAGCGATCCGCGCGGCGTACGAGGCGCTGCCTGCCGCGGCCAAGGAGCGGCTGCGCGCGGTGTACTTCGTGCACCCGGGATTCCAGGCCCGCCTCTTCTTCGCCACCTTGGGGCGATTCC ] [+] EMBL BE229659 [ cgaGGTTGATCTGATCCACGAGACGGACGACNCGATGGCCGAAGCGGAGCTGCTGCTGGAGCGCA CCGGGCGATCACCCTGAACGGCCGANACAAGCGANGCCGCGCCCTCGTCAGGATCGTCGGCAAGTNCTTCCCCGCGCGCGCNCTGGGCGGGCGGGCGGA ] [+] EMBL BI804863 [ CGCGTGCTCCCCGGA ATC GGGACCGGGATTTCGT GTCGTGTACGTCCACTCCCTCGTCGACC C GCGACAACTTCCCCGGCGTCGCAGCGATCCGCGCGGCGTACGAGGC CTGCCTGCCGC GCCAAGGA C GCTGCGC CGGTGTACTTCGTGCACCCGGGATTCCA GCCCGCCTCTTCTTCGCCACCTT GGGCGATTCCTCTTCAGCTCCGGGCTGTACGAGAAGCTGAGGTACATGAGCAGGCTCGAGTACCTGTGGGAGCACGTGAGCAAGGGGGAGATGGAGGTCCCGGAATGCGCGCGCCGGCATGACGAGGAGCTCGAGCGCCGCCCGCTCATGGACTACGGCATCGAGGCTACTGACCGCCGGTGCATGTTCGACGCCGCGTCCATGGACACCTCGGCGTCCCTGCACTCGCTCCGGTGCATCTCGTAATCGTGGTGGCCGCTCGACTGTAGCATCCGTAGCTGGCCTCGCCCCGGTCCTATATTCGTAGCTAGCGAAGGCACTGCCGCACTGTCGTAGTTTGCAGGCCCTGTTGTTCTTCGTTCCATCTGTACAAAATAGTAGTATTTGTGGAAGTAAAAGAGATAATAAAGAGAAACAGTTTGAAATGCTTAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7766#0 ------------------------------TGACGATTGCCATGGTTGATCTGATCCACG 30 consensus_7766#1 GCCCCCCCACAAGAATTGGATAAGCTCGATTGACGATTGCCATGGTTGATCTGATCCACG 60 ****************************** consensus_7766#0 AGACGGACGACGCGATGGCCGAGGCGGAGCTGCTGCTGGAGCGCAGCCGGGCGATCACCC 90 consensus_7766#1 AGACGGACGACGCGATGGCCGAGGCGGAGCTGCTGCTGGAGCGCAGCCGGGCGATCACCC 120 ************************************************************ consensus_7766#0 TGAACGGCCGAGACAAGCGAGGCCGCGCCCTCGTCAGGATCGTCGGCAAGTACTTCCCCG 150 consensus_7766#1 TGAACGGCCGAGACAAGCGAGGCCGCGCCCTCGTCAGGATCGTCGGCAAGTACTTCCCCG 180 ************************************************************ consensus_7766#0 GTAAGCTGAGCTCGGCCTCGCTCGTCAGATCCCCGCAATTCCGATGCTTTTGCCGGCGGA 210 consensus_7766#1 ------------------------------------------------------------ consensus_7766#0 AAAGTGACCCCGTTTCCTTTGTCGCGGCAGCGCGCGCGCTGGGCGGGCGGGCGGAGGCGG 270 consensus_7766#1 ------------------------------CGCGCGCGCTGGGCGGGCGGGCGGAGGCGG 210 ****************************** consensus_7766#0 CGTTGAGGGGGTACGTGCGGAGGCGCGTGCTCCCGGAGATCGGGGAGCGGGAGTTCGTGG 330 consensus_7766#1 CGTTGAGGGGGTACGTGCGGAGGCGCGTGCTCCCGGAGATCGGGGAGCGGGAGTTCGTGG 270 ************************************************************ consensus_7766#0 TCGCGTACGTCCACTCCCTCGTCGACCGCGGCGACAACTTCCCCGGCGTCGCAGCGATCC 390 consensus_7766#1 TCGTGTACGTCCACTCCCTCGTCGACCGCGGCGACAACTTCCCCGGCGTCGCAGCGATCC 330 *** ******************************************************** consensus_7766#0 GCGCGGCGTACGAGGCGCTGCCTGCCGCGGCCAAGGAGCGGCTGCGCGCGGTGTACTTCG 450 consensus_7766#1 GCGCGGCGTACGAGGCGCTGCCTGCCGCGGCCAAGGAGCGGCTGCGCGCGGTGTACTTCG 390 ************************************************************ consensus_7766#0 TGCACCCGGGATTCCAGGCCCGCCTCTTCTTCGCCACCTTGGGGCGATTCCTCTTCAGCT 510 consensus_7766#1 TGCACCCGGGATTCCAGGCCCGCCTCTTCTTCGCCACCTTGGGGCGATTCCTCTTCAGCT 450 ************************************************************ consensus_7766#0 CCGGGTATGTACATACAACGAATCACTCCGTGTGTGCTGCACTACGATTCGTGGGTGAGG 570 consensus_7766#1 CCGGG------------------------------------------------------- 455 ***** consensus_7766#0 CGCTGGTGTTTACCGTGGTTTCCTTGGAATTTTGGATCTTGCAGGCTGTACGAGAAGCTG 630 consensus_7766#1 ---------------------------------------------CTGTACGAGAAGCTG 470 *************** consensus_7766#0 AGGTACATGAGCAGGCTCGAGTACCTGTGGGAGCACGTGAGCAAGGGGGAGATGGAGGTC 690 consensus_7766#1 AGGTACATGAGCAGGCTCGAGTACCTGTGGGAGCACGTGAGCAAGGGGGAGATGGAGGTC 530 ************************************************************ consensus_7766#0 CCGGAATGCGCGCGCCGGCATGACGAGGAGCTCGAGCGCCGCCCGCTCATGGACTACGGC 750 consensus_7766#1 CCGGAATGCGCGCGCCGGCATGACGAGGAGCTCGAGCGCCGCCCGCTCATGGACTACGGC 590 ************************************************************ consensus_7766#0 ATCGAGGCTACTGACCGCCGGTGCATGTTCGACGCCGCGTCCATGGACACCTCGGCGTCC 810 consensus_7766#1 ATCGAGGCTACTGACCGCCGGTGCATGTTCGACGCCGCGTCCATGGACACCTCGGCGTCC 650 ************************************************************ consensus_7766#0 CTGCACTCGCTCCGGTGCATCTCGTAATCGTGGTGGCCGCTCGACTGTAGCATCCGTAGC 870 consensus_7766#1 CTGCACTCGCTCCGGTGCATCTCGTAATCGTGGTGGCCGCTCGACTGTAGCATCCGTAGC 710 ************************************************************ consensus_7766#0 TGGCCTCGCCCCGGTCCTATATTCGTAGCTAGCGAAGGCACTGCCGCACTGTCGTAGTTT 930 consensus_7766#1 TGGCCTCGCCCCGGTCCTATATTCGTAGCTAGCGAAGGCACTGCCGCACTGTCGTAGTTT 770 ************************************************************ consensus_7766#0 GCAGGCCCTGTTGTTCTTCGTTCCATCTGTACAAAATAGTAGTATTTGTGGAAGTAAAAG 990 consensus_7766#1 GCAGGCCCTGTTGTTCTTCGTTCCATCTGTACAAAATAGTAGTATTTGTGGAAGTAAAAG 830 ************************************************************ consensus_7766#0 AGATAATAAAGAGAAACAG-------------------- 1009 consensus_7766#1 AGATAATAAAGAGAAACAGTTTGAAATGCTTAAAAAAAA 869 ******************* |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||