These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7767#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1350 fasta sequence [GGTGCTGGGGAAATGTTCCTGCCACCATCACTTAATGATCTATATATTCAGATCATGTGGGTGAACTATGGAGCGTATTAGTGGGTTGTGGTCACTGGCAAAGAGCAAACCAACTCATCCAATCTCTCCGTATTGAATCTGAATAACTGCTCGAACCTGGTAACCCTCCCCTCTGCAGAAGCTTTCAGTAGGAATCTCACCTCGCTGCAGATCATCATCATACAGAAATGTGGGAATCTGTCATCCTTGGGTGGGCTTGAATCCCTTCCATCCCTCTCTGAATTAACAATCAGACGTTGTGCTAAACTCACAAAATTTGGTTCATCCGTAAATCCATATGTATCTGGTGGTGAAGAAGAGCATCTGGTGGATGCAAGAAGTGCCCTGCGTATCAG-CTCTCTTACAATTGATCTTCCATCCCTGCTGCTTGTTGAGCCTCTCAAGAGTCTCTGCCACACTGAACACTTAGAAATTGAAGATGCGTCACAGATG-AAGAGCTTACCTGATCGTTGGCTGCTGCAGAACAGTGCATCTCTCAAATCCCTACACATACGCAAAGTCAAGTCCTTAGAATCTCTCCAACCCAGCATGCGAGACCTAACCTCCCTCCAGAAATTGACGCTATCTGGTGTTGGCCAACTCCTCGGTTCACTTCCAGATTTTCCCACCTCTCTGTTGGAGCTGGATATTTCGGAATGTGGTTCAGAGTTGAAGAAGAAATTTAGAAAACATGGAAGCCCTGAAAGAAGCAAGATTGCCCACATCCTCAGAGTGAGAATAGACACAGACTACAACTACATAAATATAACAGGAAGCTCGCTCTTCATCATGGGAAAGGAATGCTATGGAGAGTGAAGAGACTAAGAGGAGATTATTGTATGCGGACCATGAAGAAATATTTTCCTGGTTGGACGAATCAAAACATGTCCAGGGAATTGGGTCAGTATCACGCTGGTTCAGTGAACAAATGGTCTCTACGAAACACCAGTTATTAGACGGTTGTTGCTCCAGTAAATATTGAGCCAAATCCTTCATGCGTTGCCAGGAAAGTATAGCAGACCATATTCTTCCATCTGGGCTTACTGATGACGGTTTTCTATGGACGATTGTTCCATCTTTTTATGCATTTACAAC-AAGAAACATTCAGTTTGACGCGTGCAAGTGCATGCATGCAGCAATACCAGCAGGAGAACCAAAGTTTTTGATTCTTAATTGGAGATCTCATGGACAATGTAGATTTGAATGTGCAGTTTTGGTTTGTATGTCACTGATGAATTTCAATTCTAGTGCTTGAGGCTGGCTGTAGAATTTATTGTCTTCCTGGGATCATACTACTAGAGTATAGCTTGT] [+] EMBL CA753042 [GGTGCTGGGGAAATGTTCCTGCCACCATCACTTAATGATCTATATATTCAGATCATGTGGGTGAACTATGGAGCGTATTAGTGGGTTGTGGTCACTGGCAAAGAGCAAACCAACTCATCCAATCTCTCCGTATTGAATCTGAATAACTGCTCGAACCTGGTAACCCTCCCCTCTGCAGAAGCTTTCAGTAGGAATCTCACCTCGCTGCAGATCATCATCATACAGAAATGTGGGAATCTGTCATCCTTGGGTGGGCTTGAATCCCTTCCATCCCTCTCTGAATTAACAATCAGACGTTGTGCTAAACTCACAAAATTTGGTTCATCCGTAAATCCATATGTATCTGGTGGTGAAGAAGAGCATCTGGTGGATGCAAGAAGTGCCCTGCGTATCAG CTCTCTTACAATTGATCTTCCATCCCTGCTGCTTGTAGAGCCTCTCAAGAGTCTCTGCCACACTGAACACTTAGAAATTGAAGATGCGTCACAGATGAAAGAGCTTACCTGATCGTGGGCTGCTGCAGAACAGTGCATCTCTCAAATTCCTACCCATACGCAAAGTCCACTCCTTA ] [+] EMBL AK059152 [ TGCTAAACTCACAAAATTTGGTTCATCCGTAAATCCATATGTATCTGGTGGTGAAGAAGAGCATCTGGTGGATTCAAGAAGTTCCCTGCGTATCAG CTCTCTTACAATTGATCTTCCATCCCTGCTGCTTGTTGAGCCTCTCAAGAGTCTCTGCCACACTGAACACTTAGAAATTGAAGATGCGTCACAGATG AAGAGCTTACCTGATCGTTGGCTGCTGCAGAACAGTGCATCTCTCAAATCCCTACACATACGCAAAGTCAAGTCCTTAGAATCTCTCCAACCCAGCATGCGAGACCTAACCTCCCTCCAGAAATTGACGCTATCTGGTGTTGGCCAACTCCTCGGTTCACTTCCAGATTTTCCCACCTCTCTGTTGGAGCTGGATATTTCGGAATGTGGTTCAGAGTTGAAGAAGAAATTTAGAAAACATGGAAGCCCTGAAAGAAGCAAGATTGCCCACATCCTCAGAGTGAGAATAGACACAGACTACAACTACATAAATATAACAGGAAGCTCGCTCTTCATCATGGGAAAGGAATGCTATGGAGAGTGAAGAGACTAAGAAGAGATTATTGTATGCGGACCATGAAGAAATATTTTCCTGGTTGGACGAATCAAAACATGTCCAGGGAATTGGGTCAGTATCACGCTGGTTCAGTGAACAAATGGTCTCTACGAAACACCAGTTATTAGACGGTTGTTGCTCCAGTAAATATTGAGCCAAATCCTTCATGCGTTGCCAGGAAAGTATAGCAGACCATATTCTTCCATCTGGGCTTACTGATGACGGTTTTCTATGGACGATTGTTCCATCTTTTTATGCATTTACAAC AAGAAACATTCAGTTTGACGCGTGCAAGTGCATGCATGCAGCAATACCAGCAGGAGAACCAAAGTTTTTGATTCTTAATTGGAGATCTCATGGACAATGTAGATTTGAATGTGCAGTTTTGGTTTGTATGTCACTGATGAATTTCAATTCTAGTGCTTGAGGCTGGCTGTAGAATTTATTGTCTTCCTGGGATCATACTACTAGAGTATAGCTTG ] [+] EMBL CB682839 [ tgGCGTATCAGTCTCTCTTACAATTGATCTTCCATCCCTGCTGCTTGTTGAGCCTCTCAAGAGTCTCTGCCACACTGAACACTTAGAAATTGAAGATGCGTCACAGATG AAGAGCTTACCTGATCGTTGGCTGCTGCAGAACAGTGCATCTCTCAAATCCCTACACATACGCAAAGTCAAGTCCTTAGAATCTCTCCAACCCAGCATGCAAGACCTAACCTCCCTCCAGAAATTGACGCTATCTGGTGTTGGCCAACTCCTCGGTTCACTTCCAGATTTTCCCACCTCTCTGTTGGAGCTGGATATTTCGGAATGTGGTTCAGAGTTGAAGAAGAAATTTAGAAAACATGGAAGCCCTGAAAGAAGCAAGATTGCCCACATCCTCAGAGTGAGAATAGACACAGACTACAACTACATAAATATAACAGGAAGCTCGCTCTTCATCATGGGAAAGGAATGCTATGGAGAGTGAAGAGACTAAGAGGAGATTATTGTATGCGGACCATGAAGAAATATTTTCCTGGTTGGACGAATCAAAACATGTCCAGGGAATTGGGTCAGTATCACGCTGGTTCAGTGAACAAATGGTCTCTACGAAACACCAGTTATTAGACGGTTGTTGCTCCAGTAAATATTGAGCCAAATCCTTCATGCGTTGCCAGGAAAGTATAGCAGACCATATTCTTCCATCTGGGCTTACTGATGACGGTTTTCTATGGACGATTGTTCCATCTTTTTATGCATTTACAACAAAGAAACATTCAGTTTGACGCGTGCAAGTGCATGCATGC ] [-] EMBL CB673346 [ CTCTCTGTTGGAGCTGGATATTTCGGAATGTGGTTCAGAGTTGAAGAAGAAATTTAGAAAACATGGAAGCCCTGAAAGAAGCAAGATTGCCCACATCCTCAGAGTGAGAATAGACACAGCCTACAACTACATAAATATAACAGGAAGCTCGCTCTTCATCATGGGAAAGGAATGCTATGGAGAGTGAAGAGACTAAGAGGAGATTATTGTATGCGGCCCATGAAGAAATATTTTCCTGGTTGGCCGAATCAAAACATGTCCAGGGAATGGGGTCAGTATCACGCTGGTTCAGTGAACAAATGGTCTCTACGAAACACCAGTTATTAGCCGGTTGTTGCTCCAGTAAATATTGAGCCAAATCCTTCATGCGTTGCCAGGAAAGTATAGCAGCCCATATTCTTCCATCTGGGCTTACGGATGCCGGTTTTCTATGGACGATTGTTCCATCTTTTTAGGCATTTACACC AAGAAACATTCAGTTTGACGCGTGCAAGTGCATGCATGCAGCAATACCAGCAGGAGAACCAAAGTTTTTGATTCTTAATTGGAGATCTCATGGCCAATGTAGATTTGAATGTGCAGTTTTGGTTTGTATGTCACTGATGAATTTCAATTTTAGTGCTGGAGGCGGGCTGTAGAATTTATTGTCTTCCTGGGATCATACTCCTAGAGTATAGCTTGT] consensusID : consensus_7767#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 811 fasta sequence [CATGTGGTGACTATGAGCGTATAGTGGTTGTGTCACTGCAAGAGCAACAACTCATCAATCTCTCCGTATTGAATCTGAATAACTGCTCGAACCTGGTAACCCTCCCCTCTGCAGAAGCTTTCAGTAGGAATCTCACCTCGCTGCAGATCATCATCATACAGAAATGTGGGAATCTGTCATCCTTGGGTGGGCTTGAATCCCTTCCATCCCTCTCTGAATTAACAATCAGACGTTGTGCTAAACTCACAAAATTTGGTTCATCCGTAAATCCATATGTATCTGGTGGTGAAGAAGAGCATCTGGTGGATTCAAGAAGTTCCCTGCGTATCAGCTCTCTTACAATTGATCTTCCATCCCTGCTGCTTGTTGAGCCTCTCAAGAGTCTCTGCCACACTGAACACTTAGAAATTGAAGATGCGTCACAGATGAAGAGCTTACCTGATCGTTGGCTGCTGCAGAACAGTGCATCTCTCAAATCCCTACACATACGCAAAGTCAAGTCCTTAGAATCTCTCCAACCCAGCATGCGAGACCTAACCTCCCTCCAGAAATTGCCGCTATCTGGTGTTGGCCAACTCCTCGGTTCACTTCCAGATTTTCCCACCTCTCTGTTGGAGCTGGATATTTCGGAATGTGGTTCAGAGTTGAAGAAGAAATTTAGAAAACATGGAAGCCCTGAAAGAAGCATGATTGCCCACATCCTCAGAGTGAGAATAGACACAGACTACAACTACATAAATATAACAGGAGAGAGTGAATGGACTAAGAGGAGATTATTGTAAGTTTATTTCCTTGGGGATATATCTATCTA] [-] EMBL CB630292 [CATGTGGTGACTATGAGCGTATAGTGGTTGTGTCACTGCAAGAGCAACAACTCATCAATCTCTCCGTATTGAATCTGAATAACTGCTCGAACCTGGTAACCCTCCCCTCTGCAGAAGCTTTCAGTAGGAATCTCACCTCGCTGCAGATCATCATCATACAGAAATGTGGGAATCTGTCATCCTTGGGTGGGCTTGAATCCCTTCCATCCCTCTCTGAATTAACAATCAGACGTTGTGCTAAACTCACAAAATTTGGTTCATCCGTAAATCCATATGTATCTGGTGGTGAAGAAGAGCATCTGGTGGATTCAAGAAGTTCCCTGCGTATCAGCTCTCTTACAATTGATCTTCCATCCCTGCTGCTTGTTGAGCCTCTCAAGAGTCTCTGCCACACTGAACACTTAGAAATTGAAGATGCGTCACAGATGAAGAGCTTACCTGATCGTTGGCTGCTGCAGAACAGTGCATCTCTCAAATCCCTACACATACGCAAAGTCAAGTCCTTAGAATCTCTCCAACCCAGCATGCGAGACCTAACCTCCCTCCAGAAATTGCCGCTATCTGGTGTTGGCCAACTCCTCGGTTCACTTCCAGATTTTCCCACCTCTCTGTTGGAGCTGGATATTTCGGAATGTGGTTCAGAGTTGAAGAAGAAATTTAGAAAACATGGAAGCCCTGAAAGAAGCATGATTGCCCACATCCTCAGAGTGAGAATAGACACAGACTACAACTACATAAATATAACAGGAGAGAGTGAATGGACTAAGAGGAGATTATTGTAAGTTTATTTCCTTGGGGATATATCTATCTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7767#0 GGTGCTGGGGAAATGTTCCTGCCACCATCACTTAATGATCTATATATTCAGATCATGTGG 60 consensus_7767#1 -----------------------------------------------------CATGTGG 7 ******* consensus_7767#0 GTGAACTATGGAGCGTATTAGTGGGTTGTGGTCACTGGCAAAGAGCAAACCAACTCATCC 120 consensus_7767#1 T--GACTATG-AGCGTAT-AGTGG-TTGTG-TCACTG--CAAGAGCAA--CAACTCATC- 56 ****** ******* ***** ***** ****** ******** ********* consensus_7767#0 AATCTCTCCGTATTGAATCTGAATAACTGCTCGAACCTGGTAACCCTCCCCTCTGCAGAA 180 consensus_7767#1 AATCTCTCCGTATTGAATCTGAATAACTGCTCGAACCTGGTAACCCTCCCCTCTGCAGAA 116 ************************************************************ consensus_7767#0 GCTTTCAGTAGGAATCTCACCTCGCTGCAGATCATCATCATACAGAAATGTGGGAATCTG 240 consensus_7767#1 GCTTTCAGTAGGAATCTCACCTCGCTGCAGATCATCATCATACAGAAATGTGGGAATCTG 176 ************************************************************ consensus_7767#0 TCATCCTTGGGTGGGCTTGAATCCCTTCCATCCCTCTCTGAATTAACAATCAGACGTTGT 300 consensus_7767#1 TCATCCTTGGGTGGGCTTGAATCCCTTCCATCCCTCTCTGAATTAACAATCAGACGTTGT 236 ************************************************************ consensus_7767#0 GCTAAACTCACAAAATTTGGTTCATCCGTAAATCCATATGTATCTGGTGGTGAAGAAGAG 360 consensus_7767#1 GCTAAACTCACAAAATTTGGTTCATCCGTAAATCCATATGTATCTGGTGGTGAAGAAGAG 296 ************************************************************ consensus_7767#0 CATCTGGTGGATGCAAGAAGTGCCCTGCGTATCAGCTCTCTTACAATTGATCTTCCATCC 420 consensus_7767#1 CATCTGGTGGATTCAAGAAGTTCCCTGCGTATCAGCTCTCTTACAATTGATCTTCCATCC 356 ************ ******** ************************************** consensus_7767#0 CTGCTGCTTGTTGAGCCTCTCAAGAGTCTCTGCCACACTGAACACTTAGAAATTGAAGAT 480 consensus_7767#1 CTGCTGCTTGTTGAGCCTCTCAAGAGTCTCTGCCACACTGAACACTTAGAAATTGAAGAT 416 ************************************************************ consensus_7767#0 GCGTCACAGATGAAGAGCTTACCTGATCGTTGGCTGCTGCAGAACAGTGCATCTCTCAAA 540 consensus_7767#1 GCGTCACAGATGAAGAGCTTACCTGATCGTTGGCTGCTGCAGAACAGTGCATCTCTCAAA 476 ************************************************************ consensus_7767#0 TCCCTACACATACGCAAAGTCAAGTCCTTAGAATCTCTCCAACCCAGCATGCGAGACCTA 600 consensus_7767#1 TCCCTACACATACGCAAAGTCAAGTCCTTAGAATCTCTCCAACCCAGCATGCGAGACCTA 536 ************************************************************ consensus_7767#0 ACCTCCCTCCAGAAATTGACGCTATCTGGTGTTGGCCAACTCCTCGGTTCACTTCCAGAT 660 consensus_7767#1 ACCTCCCTCCAGAAATTGCCGCTATCTGGTGTTGGCCAACTCCTCGGTTCACTTCCAGAT 596 ****************** ***************************************** consensus_7767#0 TTTCCCACCTCTCTGTTGGAGCTGGATATTTCGGAATGTGGTTCAGAGTTGAAGAAGAAA 720 consensus_7767#1 TTTCCCACCTCTCTGTTGGAGCTGGATATTTCGGAATGTGGTTCAGAGTTGAAGAAGAAA 656 ************************************************************ consensus_7767#0 TTTAGAAAACATGGAAGCCCTGAAAGAAGCAAGATTGCCCACATCCTCAGAGTGAGAATA 780 consensus_7767#1 TTTAGAAAACATGGAAGCCCTGAAAGAAGCATGATTGCCCACATCCTCAGAGTGAGAATA 716 ******************************* **************************** consensus_7767#0 GACACAGACTACAACTACATAAATATAACAGGAAGCTCGCTCTTCATCATGGGAAAGGAA 840 consensus_7767#1 GACACAGACTACAACTACATAAATATAACAGGA--------------------------- 749 ********************************* consensus_7767#0 TGCTATGGAGAGTGAAGAGACTAAGAGGAGATTATTGTATGCGGA---CCATGAAGAAAT 897 consensus_7767#1 -------GAGAGTGAATGGACTAAGAGGAGATTATTGTAAGTTTATTTCCTTGGGGATAT 802 ********* ********************* * * ** ** ** ** consensus_7767#0 ATTTTCCTGGTTGGACGAATCAAAACATGTCCAGGGAATTGGGTCAGTATCACGCTGGTT 957 consensus_7767#1 ATCTATCTA--------------------------------------------------- 811 ** * ** consensus_7767#0 CAGTGAACAAATGGTCTCTACGAAACACCAGTTATTAGACGGTTGTTGCTCCAGTAAATA 1017 consensus_7767#1 ------------------------------------------------------------ consensus_7767#0 TTGAGCCAAATCCTTCATGCGTTGCCAGGAAAGTATAGCAGACCATATTCTTCCATCTGG 1077 consensus_7767#1 ------------------------------------------------------------ consensus_7767#0 GCTTACTGATGACGGTTTTCTATGGACGATTGTTCCATCTTTTTATGCATTTACAACAAG 1137 consensus_7767#1 ------------------------------------------------------------ consensus_7767#0 AAACATTCAGTTTGACGCGTGCAAGTGCATGCATGCAGCAATACCAGCAGGAGAACCAAA 1197 consensus_7767#1 ------------------------------------------------------------ consensus_7767#0 GTTTTTGATTCTTAATTGGAGATCTCATGGACAATGTAGATTTGAATGTGCAGTTTTGGT 1257 consensus_7767#1 ------------------------------------------------------------ consensus_7767#0 TTGTATGTCACTGATGAATTTCAATTCTAGTGCTTGAGGCTGGCTGTAGAATTTATTGTC 1317 consensus_7767#1 ------------------------------------------------------------ consensus_7767#0 TTCCTGGGATCATACTACTAGAGTATAGCTTGT 1350 consensus_7767#1 --------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||