These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7776#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1028 fasta sequence [TCTTTTTTTTTAAACCAATACTCTGAAAAGGATTATTTGCAATTGACGGAAAAAAGACTGAATTTGCTACAGAATCTGAACGCCTAAAGAGATAGCAAATACAAATCGGATGCAATTCAATACGAATCTGTGTGGTTTGTGATATACTGGCAAGATTTAATCCAGGAATGCTGAGATCATGAGCTAGAAATTTGAAGGCATACAATTTACAAGGCTTCTAGTCGATGATGATTTACTACAAATCTTTCAACCACCTTGCCTTCTAAATTTATCAAAAGGGACTCCATCTCAAGAAGGTTGACTATATGCAGGAGGAAACCATCTGAGCTTGTAAGGTCATCAGGGCTGGGATTTCCAATATACAGCATTGAATTGTCTTGAC--GGAAGTAACCACAATGACCTCCCGTGCTAATATATGCATTCACTCCATATTTTGCAAAAATACGCTGAAGAGGCTCATACAACTTTGTTGTTTCCAGTGTGTGCGCCTCAGCACAAACAAAGAATGGATCATATCCAACAACTATTTTCCAGTTACTGCTGGTTGCCGCTATTGATTGCTCTAGCCATTTAATTTGTTCCCTACTAGAAGCTCTTATTTTCCCATCATGAATAGGTTCCTGTAAAGACCCTGTGTCCATACCAATAATTTCTAGACTTTGATCATATGGCATCATCACTCTCTTCAGAAAATTACCAATGATCTGTCCATGGGATGATGTAGTGGAATACCAGGGGATCTTCAGAGCCTGGAAGTACAGGGAACCATTTTGCCAAAGTGGGTCTTCCTCCCCTAGCTGAGCAACATCCACCACAAACTTGACTTTATAGGCCTTTGCTATGCTCTCCATCTGCCGTAGGAGGCGGGCCTGCTCGGCGGCCGGCCGCGCGCCGCCGGCGACGCTGAGGAAGGAGACGCCGCCGCGTCCGCCACGACCCAGCGAAGCCTCCACGCCGCCGCCACCGCCGCGGCCCCGATTCCGGTGGAAGCGTGGCTCGCCGAGGCTGAAGGCCGCGTACATCGCGAC] [+] EMBL CB658991 [TCTTTTTTTTTAAACCAATACTCTGAAAAGGATTATTTGCAATTGACGGAAAAAAGACTGAATTTGCTACAGAATCTGAACGCCTAAAGAGATAGCAAATACAAATCGGATGCAATTCAATACGAATCTGTGTGGTTTGTGATATACTGGCAAGATTTAATCCAGGAATGCTGAGATCATGAGCTAGAAATTTGAAGGCATACAATTTACAAGGCTTCTAGTCGATGATGATTTACTACAAATCTTTCAACCACCTTGCCTTCTAAATTTATCAAAAGGGACTCCATCTCAAGAAGGTTGACTATATGCAGGAGGAAACCATCTGAGCTTGTAAGGTCATCAGGGCTGGGATTTCCAATATACAGCATTGAATTGTCTTGAC GGAAGTAACCACAATGACCTCCCGTGCTAATATATGCATTCACTCCATATTTTGCAAAAATACGCTGAAGAGGCTCATACAACTTTGTTGTTTCCAGTGTGTGCGCCTCAGCACAAACAAAGAATGGATCATATCCAACAACTATTTTCCAGTTACTGCTGGTTGCCGCTATTGATTGCTCTAGCCATTTAATTTGTTCCCTACTAGAAGCTCTTATTTTCCCATCATGAATAGGTTCCTGTAAAGACCCTGTGTCCATACCAATAATTTCTAGACTTTGATCATATGGCATCATCACTCTCTTCAGAAAATTACCAATGATCTGTCCATGGGATGATGTAGTGGAATACCAGGGGATCTTCAGAGCCTGGAAGTACAGGGAACCATTTTGCCAAAGTGGGTCTTCCTCCCCTAGCTGAGCAACATCCACCACAAACTTGACTTTATAGGCCTT ] [+] EMBL CB659015 [ AACCAATACTCTGAAAAGGATTATTTGCAATCCTCGGAAAAAAGACTGAATTTGCTACAAAATCTGAACGCCTAAAGAGATAGCAAATACAAATCGGATGCAATTCAATACGAATCTGTGTGGTTTGTGATATACTGGCAAGATTTAATCCAGGAATGCTGAGATCATGAGCTAGAAATTTGAAGGCATACAATTTACAAGGCTTCTAGTCGATGATGATTTACTACAAATCTTTCACCCCCCTTGCCTTCTAAATTTATCAAAAGGGACTCCATCTCAAGAAGGTTGACTATATGCAGGAGGAAACCATCTGAGCTTGTAAGGTCATCAGGGCTGGGATTTCCAATATACAGCATTGAATTGTCTTGAC GGAAGTAACCACCATGACCTCCCGTGCTAATATATGCATTCACTCCATATTTTGCAAAAATACGCTGAAGAGGCTCATACAACTTTGTTGTTTCCAGTGTGTGCGCCTCACCACAAACAAAGAATGGATCATATCCAACGACTATTTTCCAGTTACTGCTGGTTGCCGCTATTGATTGCTCTAGCCATTTAATTTGTTCCCTACTAGAAGCTCTTATTTTCCCATCATGAATAGGTTCCTGTAAAGACCCTGTGTCCATACCAATAATTTCTAGACTTTGATCATATGGCATCATCACTCTCTTCAGAAAATTACCAATGATCTGTCC ] [-] EMBL CB658990 [ TATACAGCATTGAA TGTC TGACGGGGAAGTAACCACAATGACCTCCCGTGCTAATATATGCATTCACTCCATATTTTGCAAAAATACGCTGAAGAGGCTCATACAACTTTGTTGTTTCCAGTGTGTGCGCCTCAGCACAAACAAAGAATGGATCATATCCAACAACTATTTTCCAGTTACTGCTGGTTGCCGCTATTGATTGCTCTAGCCATTTAATTTGTTCCCTACTAGAAGCTCTTATTTTCCCATCATGAATAGGTTCCTGTAAAGACCCTGTGTCCATACCAATAATTTCTAGACTTTGATCATATGGCATCATCACTCTCTTCAGAAAATTACCAATGATCTGTCCATGGGATGATGTAGTGGAATACCAGGGGATCTTCAGAGCCTGGAAGTACAGGGAACCATTTTGCCAAAGTGGGTCTTCCTCCCCTAGCTGAGCAACATCCACCACAAACTTGACTTTATAGGCCTTTGCTATGCTCTCCATCTGCCGTAGGAGGCGGGCCTGCTCGGCGGCCGGCCGCGCGCCGCCGGCGACGCTGAGGAAGGAGACGCCGCCGCGTCCGCCACGACCCAGCGAAGCCTCCACGCCGCCGCCACCGCCGCGGCCCCGATTCCGGTGGAAGCGTGGCTCGCCGAGGCTGAAGGCCGCGTACATCGCGAC] [-] EMBL C72517 [ CTAACNATTTAATTTGTCCCCTACTAGAAGCTCTTA TTTCCCATCATGAATAGGTCCTTGTAAAGACCCTGTGTCCATACCAATAATTTCTAGACTTTGATCATATGGCATCATCACTCTCTTCAGAAAATTACCAATGATCTGTCCATGGGATGATGTAGTGGAATACCAGGGGATCTTCAGAGCCTGGAAGTACAGGGAACCATTTTGCCAAAGTGGGTCTTCCTCCCCTAGCTGAGCAACATCCACCACAAACTTGACTTTATAGGCCTTTGCTATGCTCTCCATCTGCCGTAGGAGGCGGGCCTGCTCGGCGGCCGGCCGCGC CCGCCGGCGACGCTGAGGAAGGAGACGCCGCCGCGTCCGCCACGACCCAGCGAAGCCTCCACGCCGCCGCCACCGCCGCGGCCCCGATTCCGGTGGAAGCGTGGCTCGCCGAGGC ] consensusID : consensus_7776#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 371 fasta sequence [TTTTTTTTTTTTTTTTTTTGATTGATGATAATNAGTTAATTGCTGTATATATACCAAGCAATACATAATTAGCCAGGNTATACAGTAGTNCCAGCCAGACAAAACTGTGNTAAACCANTACTCTGAAAAGGNTTATTTGCAATTGACGGAAAAAAGACTGANTTTGCTACAGAATCTGAACGCCTAAAGAGNTAGCAANTACAAATCGGATGCAATTCAATACGAATCTGTGTGGTTTGTGATATACTGGCAAGNTTTAATCCAGGAATGCTGAGATCATGAGCTAGAAATTTGAAGGCATACAATTTACAAGGCTTCTAGTCGATGATGTTTTACTACAAATCTTTCAACCACCTTGCCTTCTAAATTTA] [-] EMBL AU033096 [TTTTTTTTTTTTTTTTTTTGATTGATGATAATNAGTTAATTGCTGTATATATACCAAGCAATACATAATTAGCCAGGNTATACAGTAGTNCCAGCCAGACAAAACTGTGNTAAACCANTACTCTGAAAAGGNTTATTTGCAATTGACGGAAAAAAGACTGANTTTGCTACAGAATCTGAACGCCTAAAGAGNTAGCAANTACAAATCGGATGCAATTCAATACGAATCTGTGTGGTTTGTGATATACTGGCAAGNTTTAATCCAGGAATGCTGAGATCATGAGCTAGAAATTTGAAGGCATACAATTTACAAGGCTTCTAGTCGATGATGTTTTACTACAAATCTTTCAACCACCTTGCCTTCTAAATTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7776#0 ------------------------------------------------------------ consensus_7776#1 TTTTTTTTTTTTTTTTTTTGATTGATGATAATNAGTTAATTGCTGTATATATACCAAGCA 60 consensus_7776#0 ----------------------------------------TCTTTTTTTTTAAACCAATA 20 consensus_7776#1 ATACATAATTAGCCAGGNTATACAGTAGTNCCAGCCAGACAAAACTGTGNTAAACCANTA 120 * * ******* ** consensus_7776#0 CTCTGAAAAGGATTATTTGCAATTGACGGAAAAAAGACTGAATTTGCTACAGAATCTGAA 80 consensus_7776#1 CTCTGAAAAGGNTTATTTGCAATTGACGGAAAAAAGACTGANTTTGCTACAGAATCTGAA 180 *********** ***************************** ****************** consensus_7776#0 CGCCTAAAGAGATAGCAAATACAAATCGGATGCAATTCAATACGAATCTGTGTGGTTTGT 140 consensus_7776#1 CGCCTAAAGAGNTAGCAANTACAAATCGGATGCAATTCAATACGAATCTGTGTGGTTTGT 240 *********** ****** ***************************************** consensus_7776#0 GATATACTGGCAAGATTTAATCCAGGAATGCTGAGATCATGAGCTAGAAATTTGAAGGCA 200 consensus_7776#1 GATATACTGGCAAGNTTTAATCCAGGAATGCTGAGATCATGAGCTAGAAATTTGAAGGCA 300 ************** ********************************************* consensus_7776#0 TACAATTTACAAGGCTTCTAGTCGATGATGATTTACTACAAATCTTTCAACCACCTTGCC 260 consensus_7776#1 TACAATTTACAAGGCTTCTAGTCGATGATGTTTTACTACAAATCTTTCAACCACCTTGCC 360 ****************************** ***************************** consensus_7776#0 TTCTAAATTTATCAAAAGGGACTCCATCTCAAGAAGGTTGACTATATGCAGGAGGAAACC 320 consensus_7776#1 TTCTAAATTTA------------------------------------------------- 371 *********** consensus_7776#0 ATCTGAGCTTGTAAGGTCATCAGGGCTGGGATTTCCAATATACAGCATTGAATTGTCTTG 380 consensus_7776#1 ------------------------------------------------------------ consensus_7776#0 ACGGAAGTAACCACAATGACCTCCCGTGCTAATATATGCATTCACTCCATATTTTGCAAA 440 consensus_7776#1 ------------------------------------------------------------ consensus_7776#0 AATACGCTGAAGAGGCTCATACAACTTTGTTGTTTCCAGTGTGTGCGCCTCAGCACAAAC 500 consensus_7776#1 ------------------------------------------------------------ consensus_7776#0 AAAGAATGGATCATATCCAACAACTATTTTCCAGTTACTGCTGGTTGCCGCTATTGATTG 560 consensus_7776#1 ------------------------------------------------------------ consensus_7776#0 CTCTAGCCATTTAATTTGTTCCCTACTAGAAGCTCTTATTTTCCCATCATGAATAGGTTC 620 consensus_7776#1 ------------------------------------------------------------ consensus_7776#0 CTGTAAAGACCCTGTGTCCATACCAATAATTTCTAGACTTTGATCATATGGCATCATCAC 680 consensus_7776#1 ------------------------------------------------------------ consensus_7776#0 TCTCTTCAGAAAATTACCAATGATCTGTCCATGGGATGATGTAGTGGAATACCAGGGGAT 740 consensus_7776#1 ------------------------------------------------------------ consensus_7776#0 CTTCAGAGCCTGGAAGTACAGGGAACCATTTTGCCAAAGTGGGTCTTCCTCCCCTAGCTG 800 consensus_7776#1 ------------------------------------------------------------ consensus_7776#0 AGCAACATCCACCACAAACTTGACTTTATAGGCCTTTGCTATGCTCTCCATCTGCCGTAG 860 consensus_7776#1 ------------------------------------------------------------ consensus_7776#0 GAGGCGGGCCTGCTCGGCGGCCGGCCGCGCGCCGCCGGCGACGCTGAGGAAGGAGACGCC 920 consensus_7776#1 ------------------------------------------------------------ consensus_7776#0 GCCGCGTCCGCCACGACCCAGCGAAGCCTCCACGCCGCCGCCACCGCCGCGGCCCCGATT 980 consensus_7776#1 ------------------------------------------------------------ consensus_7776#0 CCGGTGGAAGCGTGGCTCGCCGAGGCTGAAGGCCGCGTACATCGCGAC 1028 consensus_7776#1 ------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||