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Oryza sativa
cluster # 7776 cluster # 7776       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7776#0 length = 1028 sequences # 4  
consensus_7776#1 length = 371 sequences # 1  

consensusID : consensus_7776#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1028
fasta sequence
                              [TCTTTTTTTTTAAACCAATACTCTGAAAAGGATTATTTGCAATTGACGGAAAAAAGACTGAATTTGCTACAGAATCTGAACGCCTAAAGAGATAGCAAATACAAATCGGATGCAATTCAATACGAATCTGTGTGGTTTGTGATATACTGGCAAGATTTAATCCAGGAATGCTGAGATCATGAGCTAGAAATTTGAAGGCATACAATTTACAAGGCTTCTAGTCGATGATGATTTACTACAAATCTTTCAACCACCTTGCCTTCTAAATTTATCAAAAGGGACTCCATCTCAAGAAGGTTGACTATATGCAGGAGGAAACCATCTGAGCTTGTAAGGTCATCAGGGCTGGGATTTCCAATATACAGCATTGAATTGTCTTGAC--GGAAGTAACCACAATGACCTCCCGTGCTAATATATGCATTCACTCCATATTTTGCAAAAATACGCTGAAGAGGCTCATACAACTTTGTTGTTTCCAGTGTGTGCGCCTCAGCACAAACAAAGAATGGATCATATCCAACAACTATTTTCCAGTTACTGCTGGTTGCCGCTATTGATTGCTCTAGCCATTTAATTTGTTCCCTACTAGAAGCTCTTATTTTCCCATCATGAATAGGTTCCTGTAAAGACCCTGTGTCCATACCAATAATTTCTAGACTTTGATCATATGGCATCATCACTCTCTTCAGAAAATTACCAATGATCTGTCCATGGGATGATGTAGTGGAATACCAGGGGATCTTCAGAGCCTGGAAGTACAGGGAACCATTTTGCCAAAGTGGGTCTTCCTCCCCTAGCTGAGCAACATCCACCACAAACTTGACTTTATAGGCCTTTGCTATGCTCTCCATCTGCCGTAGGAGGCGGGCCTGCTCGGCGGCCGGCCGCGCGCCGCCGGCGACGCTGAGGAAGGAGACGCCGCCGCGTCCGCCACGACCCAGCGAAGCCTCCACGCCGCCGCCACCGCCGCGGCCCCGATTCCGGTGGAAGCGTGGCTCGCCGAGGCTGAAGGCCGCGTACATCGCGAC]

[+] EMBL CB658991             [TCTTTTTTTTTAAACCAATACTCTGAAAAGGATTATTTGCAATTGACGGAAAAAAGACTGAATTTGCTACAGAATCTGAACGCCTAAAGAGATAGCAAATACAAATCGGATGCAATTCAATACGAATCTGTGTGGTTTGTGATATACTGGCAAGATTTAATCCAGGAATGCTGAGATCATGAGCTAGAAATTTGAAGGCATACAATTTACAAGGCTTCTAGTCGATGATGATTTACTACAAATCTTTCAACCACCTTGCCTTCTAAATTTATCAAAAGGGACTCCATCTCAAGAAGGTTGACTATATGCAGGAGGAAACCATCTGAGCTTGTAAGGTCATCAGGGCTGGGATTTCCAATATACAGCATTGAATTGTCTTGAC  GGAAGTAACCACAATGACCTCCCGTGCTAATATATGCATTCACTCCATATTTTGCAAAAATACGCTGAAGAGGCTCATACAACTTTGTTGTTTCCAGTGTGTGCGCCTCAGCACAAACAAAGAATGGATCATATCCAACAACTATTTTCCAGTTACTGCTGGTTGCCGCTATTGATTGCTCTAGCCATTTAATTTGTTCCCTACTAGAAGCTCTTATTTTCCCATCATGAATAGGTTCCTGTAAAGACCCTGTGTCCATACCAATAATTTCTAGACTTTGATCATATGGCATCATCACTCTCTTCAGAAAATTACCAATGATCTGTCCATGGGATGATGTAGTGGAATACCAGGGGATCTTCAGAGCCTGGAAGTACAGGGAACCATTTTGCCAAAGTGGGTCTTCCTCCCCTAGCTGAGCAACATCCACCACAAACTTGACTTTATAGGCCTT                                                                                                                                                                                                ]
[+] EMBL CB659015             [            AACCAATACTCTGAAAAGGATTATTTGCAATCCTCGGAAAAAAGACTGAATTTGCTACAAAATCTGAACGCCTAAAGAGATAGCAAATACAAATCGGATGCAATTCAATACGAATCTGTGTGGTTTGTGATATACTGGCAAGATTTAATCCAGGAATGCTGAGATCATGAGCTAGAAATTTGAAGGCATACAATTTACAAGGCTTCTAGTCGATGATGATTTACTACAAATCTTTCACCCCCCTTGCCTTCTAAATTTATCAAAAGGGACTCCATCTCAAGAAGGTTGACTATATGCAGGAGGAAACCATCTGAGCTTGTAAGGTCATCAGGGCTGGGATTTCCAATATACAGCATTGAATTGTCTTGAC  GGAAGTAACCACCATGACCTCCCGTGCTAATATATGCATTCACTCCATATTTTGCAAAAATACGCTGAAGAGGCTCATACAACTTTGTTGTTTCCAGTGTGTGCGCCTCACCACAAACAAAGAATGGATCATATCCAACGACTATTTTCCAGTTACTGCTGGTTGCCGCTATTGATTGCTCTAGCCATTTAATTTGTTCCCTACTAGAAGCTCTTATTTTCCCATCATGAATAGGTTCCTGTAAAGACCCTGTGTCCATACCAATAATTTCTAGACTTTGATCATATGGCATCATCACTCTCTTCAGAAAATTACCAATGATCTGTCC                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CB658990             [                                                                                                                                                                                                                                                                                                                                                                      TATACAGCATTGAA TGTC TGACGGGGAAGTAACCACAATGACCTCCCGTGCTAATATATGCATTCACTCCATATTTTGCAAAAATACGCTGAAGAGGCTCATACAACTTTGTTGTTTCCAGTGTGTGCGCCTCAGCACAAACAAAGAATGGATCATATCCAACAACTATTTTCCAGTTACTGCTGGTTGCCGCTATTGATTGCTCTAGCCATTTAATTTGTTCCCTACTAGAAGCTCTTATTTTCCCATCATGAATAGGTTCCTGTAAAGACCCTGTGTCCATACCAATAATTTCTAGACTTTGATCATATGGCATCATCACTCTCTTCAGAAAATTACCAATGATCTGTCCATGGGATGATGTAGTGGAATACCAGGGGATCTTCAGAGCCTGGAAGTACAGGGAACCATTTTGCCAAAGTGGGTCTTCCTCCCCTAGCTGAGCAACATCCACCACAAACTTGACTTTATAGGCCTTTGCTATGCTCTCCATCTGCCGTAGGAGGCGGGCCTGCTCGGCGGCCGGCCGCGCGCCGCCGGCGACGCTGAGGAAGGAGACGCCGCCGCGTCCGCCACGACCCAGCGAAGCCTCCACGCCGCCGCCACCGCCGCGGCCCCGATTCCGGTGGAAGCGTGGCTCGCCGAGGCTGAAGGCCGCGTACATCGCGAC]
[-] EMBL C72517               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CTAACNATTTAATTTGTCCCCTACTAGAAGCTCTTA TTTCCCATCATGAATAGGTCCTTGTAAAGACCCTGTGTCCATACCAATAATTTCTAGACTTTGATCATATGGCATCATCACTCTCTTCAGAAAATTACCAATGATCTGTCCATGGGATGATGTAGTGGAATACCAGGGGATCTTCAGAGCCTGGAAGTACAGGGAACCATTTTGCCAAAGTGGGTCTTCCTCCCCTAGCTGAGCAACATCCACCACAAACTTGACTTTATAGGCCTTTGCTATGCTCTCCATCTGCCGTAGGAGGCGGGCCTGCTCGGCGGCCGGCCGCGC CCGCCGGCGACGCTGAGGAAGGAGACGCCGCCGCGTCCGCCACGACCCAGCGAAGCCTCCACGCCGCCGCCACCGCCGCGGCCCCGATTCCGGTGGAAGCGTGGCTCGCCGAGGC                      ]


>consensus_7776#0 TCTTTTTTTTTAAACCAATACTCTGAAAAGGATTATTTGCAATTGACGGAAAAAAGACTG AATTTGCTACAGAATCTGAACGCCTAAAGAGATAGCAAATACAAATCGGATGCAATTCAA TACGAATCTGTGTGGTTTGTGATATACTGGCAAGATTTAATCCAGGAATGCTGAGATCAT GAGCTAGAAATTTGAAGGCATACAATTTACAAGGCTTCTAGTCGATGATGATTTACTACA AATCTTTCAACCACCTTGCCTTCTAAATTTATCAAAAGGGACTCCATCTCAAGAAGGTTG ACTATATGCAGGAGGAAACCATCTGAGCTTGTAAGGTCATCAGGGCTGGGATTTCCAATA TACAGCATTGAATTGTCTTGACGGAAGTAACCACAATGACCTCCCGTGCTAATATATGCA TTCACTCCATATTTTGCAAAAATACGCTGAAGAGGCTCATACAACTTTGTTGTTTCCAGT GTGTGCGCCTCAGCACAAACAAAGAATGGATCATATCCAACAACTATTTTCCAGTTACTG CTGGTTGCCGCTATTGATTGCTCTAGCCATTTAATTTGTTCCCTACTAGAAGCTCTTATT TTCCCATCATGAATAGGTTCCTGTAAAGACCCTGTGTCCATACCAATAATTTCTAGACTT TGATCATATGGCATCATCACTCTCTTCAGAAAATTACCAATGATCTGTCCATGGGATGAT GTAGTGGAATACCAGGGGATCTTCAGAGCCTGGAAGTACAGGGAACCATTTTGCCAAAGT GGGTCTTCCTCCCCTAGCTGAGCAACATCCACCACAAACTTGACTTTATAGGCCTTTGCT ATGCTCTCCATCTGCCGTAGGAGGCGGGCCTGCTCGGCGGCCGGCCGCGCGCCGCCGGCG ACGCTGAGGAAGGAGACGCCGCCGCGTCCGCCACGACCCAGCGAAGCCTCCACGCCGCCG CCACCGCCGCGGCCCCGATTCCGGTGGAAGCGTGGCTCGCCGAGGCTGAAGGCCGCGTAC ATCGCGAC



consensusID : consensus_7776#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 371
fasta sequence
                              [TTTTTTTTTTTTTTTTTTTGATTGATGATAATNAGTTAATTGCTGTATATATACCAAGCAATACATAATTAGCCAGGNTATACAGTAGTNCCAGCCAGACAAAACTGTGNTAAACCANTACTCTGAAAAGGNTTATTTGCAATTGACGGAAAAAAGACTGANTTTGCTACAGAATCTGAACGCCTAAAGAGNTAGCAANTACAAATCGGATGCAATTCAATACGAATCTGTGTGGTTTGTGATATACTGGCAAGNTTTAATCCAGGAATGCTGAGATCATGAGCTAGAAATTTGAAGGCATACAATTTACAAGGCTTCTAGTCGATGATGTTTTACTACAAATCTTTCAACCACCTTGCCTTCTAAATTTA]

[-] EMBL AU033096             [TTTTTTTTTTTTTTTTTTTGATTGATGATAATNAGTTAATTGCTGTATATATACCAAGCAATACATAATTAGCCAGGNTATACAGTAGTNCCAGCCAGACAAAACTGTGNTAAACCANTACTCTGAAAAGGNTTATTTGCAATTGACGGAAAAAAGACTGANTTTGCTACAGAATCTGAACGCCTAAAGAGNTAGCAANTACAAATCGGATGCAATTCAATACGAATCTGTGTGGTTTGTGATATACTGGCAAGNTTTAATCCAGGAATGCTGAGATCATGAGCTAGAAATTTGAAGGCATACAATTTACAAGGCTTCTAGTCGATGATGTTTTACTACAAATCTTTCAACCACCTTGCCTTCTAAATTTA]


>consensus_7776#1 TTTTTTTTTTTTTTTTTTTGATTGATGATAATNAGTTAATTGCTGTATATATACCAAGCA ATACATAATTAGCCAGGNTATACAGTAGTNCCAGCCAGACAAAACTGTGNTAAACCANTA CTCTGAAAAGGNTTATTTGCAATTGACGGAAAAAAGACTGANTTTGCTACAGAATCTGAA CGCCTAAAGAGNTAGCAANTACAAATCGGATGCAATTCAATACGAATCTGTGTGGTTTGT GATATACTGGCAAGNTTTAATCCAGGAATGCTGAGATCATGAGCTAGAAATTTGAAGGCA TACAATTTACAAGGCTTCTAGTCGATGATGTTTTACTACAAATCTTTCAACCACCTTGCC TTCTAAATTTA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7776#0      ------------------------------------------------------------
consensus_7776#1      TTTTTTTTTTTTTTTTTTTGATTGATGATAATNAGTTAATTGCTGTATATATACCAAGCA 60
                                                                                  

consensus_7776#0      ----------------------------------------TCTTTTTTTTTAAACCAATA 20
consensus_7776#1      ATACATAATTAGCCAGGNTATACAGTAGTNCCAGCCAGACAAAACTGTGNTAAACCANTA 120
                                                                   * *  ******* **

consensus_7776#0      CTCTGAAAAGGATTATTTGCAATTGACGGAAAAAAGACTGAATTTGCTACAGAATCTGAA 80
consensus_7776#1      CTCTGAAAAGGNTTATTTGCAATTGACGGAAAAAAGACTGANTTTGCTACAGAATCTGAA 180
                      *********** ***************************** ******************

consensus_7776#0      CGCCTAAAGAGATAGCAAATACAAATCGGATGCAATTCAATACGAATCTGTGTGGTTTGT 140
consensus_7776#1      CGCCTAAAGAGNTAGCAANTACAAATCGGATGCAATTCAATACGAATCTGTGTGGTTTGT 240
                      *********** ****** *****************************************

consensus_7776#0      GATATACTGGCAAGATTTAATCCAGGAATGCTGAGATCATGAGCTAGAAATTTGAAGGCA 200
consensus_7776#1      GATATACTGGCAAGNTTTAATCCAGGAATGCTGAGATCATGAGCTAGAAATTTGAAGGCA 300
                      ************** *********************************************

consensus_7776#0      TACAATTTACAAGGCTTCTAGTCGATGATGATTTACTACAAATCTTTCAACCACCTTGCC 260
consensus_7776#1      TACAATTTACAAGGCTTCTAGTCGATGATGTTTTACTACAAATCTTTCAACCACCTTGCC 360
                      ****************************** *****************************

consensus_7776#0      TTCTAAATTTATCAAAAGGGACTCCATCTCAAGAAGGTTGACTATATGCAGGAGGAAACC 320
consensus_7776#1      TTCTAAATTTA------------------------------------------------- 371
                      ***********                                                 

consensus_7776#0      ATCTGAGCTTGTAAGGTCATCAGGGCTGGGATTTCCAATATACAGCATTGAATTGTCTTG 380
consensus_7776#1      ------------------------------------------------------------
                                                                                  

consensus_7776#0      ACGGAAGTAACCACAATGACCTCCCGTGCTAATATATGCATTCACTCCATATTTTGCAAA 440
consensus_7776#1      ------------------------------------------------------------
                                                                                  

consensus_7776#0      AATACGCTGAAGAGGCTCATACAACTTTGTTGTTTCCAGTGTGTGCGCCTCAGCACAAAC 500
consensus_7776#1      ------------------------------------------------------------
                                                                                  

consensus_7776#0      AAAGAATGGATCATATCCAACAACTATTTTCCAGTTACTGCTGGTTGCCGCTATTGATTG 560
consensus_7776#1      ------------------------------------------------------------
                                                                                  

consensus_7776#0      CTCTAGCCATTTAATTTGTTCCCTACTAGAAGCTCTTATTTTCCCATCATGAATAGGTTC 620
consensus_7776#1      ------------------------------------------------------------
                                                                                  

consensus_7776#0      CTGTAAAGACCCTGTGTCCATACCAATAATTTCTAGACTTTGATCATATGGCATCATCAC 680
consensus_7776#1      ------------------------------------------------------------
                                                                                  

consensus_7776#0      TCTCTTCAGAAAATTACCAATGATCTGTCCATGGGATGATGTAGTGGAATACCAGGGGAT 740
consensus_7776#1      ------------------------------------------------------------
                                                                                  

consensus_7776#0      CTTCAGAGCCTGGAAGTACAGGGAACCATTTTGCCAAAGTGGGTCTTCCTCCCCTAGCTG 800
consensus_7776#1      ------------------------------------------------------------
                                                                                  

consensus_7776#0      AGCAACATCCACCACAAACTTGACTTTATAGGCCTTTGCTATGCTCTCCATCTGCCGTAG 860
consensus_7776#1      ------------------------------------------------------------
                                                                                  

consensus_7776#0      GAGGCGGGCCTGCTCGGCGGCCGGCCGCGCGCCGCCGGCGACGCTGAGGAAGGAGACGCC 920
consensus_7776#1      ------------------------------------------------------------
                                                                                  

consensus_7776#0      GCCGCGTCCGCCACGACCCAGCGAAGCCTCCACGCCGCCGCCACCGCCGCGGCCCCGATT 980
consensus_7776#1      ------------------------------------------------------------
                                                                                  

consensus_7776#0      CCGGTGGAAGCGTGGCTCGCCGAGGCTGAAGGCCGCGTACATCGCGAC 1028
consensus_7776#1      ------------------------------------------------
                                                                      




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)