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Oryza sativa
cluster # 7777 cluster # 7777       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7777#0 length = 590 sequences # 3  
consensus_7777#1 length = 460 sequences # 2  

consensusID : consensus_7777#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 590
fasta sequence
                              [ACNCTCCACAAAAAAATTCACAAATCGATACTCCTCTTCCTCGCTGCGCCACCACGCCGCCGTCGCCGGAGACCGGCCATAGCCGGCAACGTCCTCACCACCACCTGCTGCAAGCCCTCCCCCACAGCCTTCGGTTGCTGCTGCTTCAGTTTCCTCCAAGTGCGAGACGACCCGATCTGCATCCTCTACTGGTTCTTCG-TCTTCAACACTGCTGCTGCTCGTTCTGCTNCGATCTGTGGCTGCTGNTTCTGCCTCTACACCGGGGACGCCAAGCTACNGCTGGTGCTTCAAGCTCTACTTCCAGGACGCCGATCTGCANCCTTCTTCTTCACTGCTGCCTAAAAATCTTCATCCTACTTCCAGTGCTTCAACAACAGTTTCATCACTTGGGTTTATTCTTTCCTATCCTCACTTCTTANATAAAAACTTGNGCNTTATTTNAGAGATTTGATCACTGACGATTGTGAATTTACTTTCCTGCACTTCTAATACNGGNACATAGTGGTNTTTTGNCCAGATTANNTGCTATGATGATAAATTGCTGCANTCTGAGTTACCTAGNTGGCTACGGGNACTATAATTTNGTAGAT]

[+] EMBL CA765636             [ACNCTCCACAAAAAAATT ACAAATCGATACTCCTCTTCCTCGCTGCGCCACCACGCCGCCGNCGNCGGAGACCGNCCATAGCCGGCAACGNCCTCACCACCACCTGCTGCAAGCCCTCCCCCACAGCCTTCGGTTGCTGCTGCTTCAGNTTCCTCCAAGTGCGANACGACCCGATCTGCATCCTCTACTGGTTCTTCGCTCNTCAACACTGCTGCTGCTCGTTCTGCTNCGATCTGTGGCTGCTGNTTCTGCCTCTACACCGGGGACGCCAAGCTACNGCTGGTGCTTCAAGCTCTACTTCCAGGACGCCGATCTGCANCCTTCTTCTTCACTGCTGCCTAAAAATCTTCATCCTACTTCCAGTGCTTCAACAACAGTTTCATCACTTGGGTTTATTCTTTCCTATCCTCACTTCTTANATAAAAACTTGNGCNTTATTTNAGAGATTTGATCACTGACGATTGTGAATTTACTTTCCTGCACTTCTAATACNGGNACATAGTGGTNTTTTGNCCAGATTANNTGCTATGATGATAAATTGCTGCANTCTGAGTTACCTAGNTGGCTACGGGNACTATAATTTNGTAGAT]
[+] EMBL AK058208             [  aCTCCACAAAAAAATTCACAAATCGATACTCCTCTTCCTCGCTGCGCCACCACGCCGCCGTCGCCGGAGACCGGCCATAGCCGGCGACGTCCTCACCACCACCAGCTGCAAGCCCTCCCCCACAGCCTTCGGTTGCTGCTGCTTCAGTTTCCTCCAAGTGCGAGACGACCCGATCTGCATCCTCTACTGGTTCTTCG TCTTCAACACTGCTGCTGCTCGTTCTGCTTCGATCTGTGGCTGCTGCTTCTGCCTCTACACCAGGGACGCCAAGCTACTGCTGGTGCTTCAAGCTCTACTTCCAGGACGCCGATCTGCAACCTTCTTCTTCACTGCTGCCTAAAAATCTTCATCCTACTTCCAGTGCTTCGACAACAGTTTCATCACTTGGGTTTATTCTTTCCTATCCTCA   GTTAGATAAAAACTTGTGCTTTATTTCAGAGATTTGATCACTG TGATTGTAAATTTACTTTCCTGCACTTCTAATACTGGAACATAGTGtt                                                                                    ]
[+] EMBL CA753221             [             AAATTCACAAATCGATACTCCTCTTCCTCGCTGCGCCACCACGCCGCCGTCGCCGGAGACCGGCCATAGCCGGCAACGTCCTCACCACCACCTGCTGCAAGCCCTCCCCCACAGCCTTCGGTTGCTGCTGCTTCAGTTTCCTCCAAGTGCGAGACGACCCGATCTGCATCCTCTACTGGTTCTTCG TCTTCAA                                                                                                                                                                                                                                                                                                                                                                                                ]


>consensus_7777#0 ACNCTCCACAAAAAAATTCACAAATCGATACTCCTCTTCCTCGCTGCGCCACCACGCCGC CGTCGCCGGAGACCGGCCATAGCCGGCAACGTCCTCACCACCACCTGCTGCAAGCCCTCC CCCACAGCCTTCGGTTGCTGCTGCTTCAGTTTCCTCCAAGTGCGAGACGACCCGATCTGC ATCCTCTACTGGTTCTTCGTCTTCAACACTGCTGCTGCTCGTTCTGCTNCGATCTGTGGC TGCTGNTTCTGCCTCTACACCGGGGACGCCAAGCTACNGCTGGTGCTTCAAGCTCTACTT CCAGGACGCCGATCTGCANCCTTCTTCTTCACTGCTGCCTAAAAATCTTCATCCTACTTC CAGTGCTTCAACAACAGTTTCATCACTTGGGTTTATTCTTTCCTATCCTCACTTCTTANA TAAAAACTTGNGCNTTATTTNAGAGATTTGATCACTGACGATTGTGAATTTACTTTCCTG CACTTCTAATACNGGNACATAGTGGTNTTTTGNCCAGATTANNTGCTATGATGATAAATT GCTGCANTCTGAGTTACCTAGNTGGCTACGGGNACTATAATTTNGTAGAT



consensusID : consensus_7777#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 460
fasta sequence
                              [ATCCTCTACTG-GTTCTTCGTCTTCAACACTGCTGCTGCTCGTTCTGCTTCGATCTGTGGCTGCTGCTTCTGCCTCTACACCAGGGACGCCAAGCTACTGCTGGTGCTTCAAGCTCTACTTCCAGGACGCCGATCTGCAACCTTCTTCTTCACTGCTGCCTAAAAATCTTCATCCTACTTCCAGTGCTTCGACAACAGTTTCATCACTTGGGTTTATTCTTTCCTATCCTCAGTTAGATAAAAACTTGTGCTTTATTTCAGAGATTTGATCACTGTGATTGTAAATTTACTTTCCTGCACTTCTAATACTGGAACATAGTGTTTTTTTTGTCCAGATTAGCTTCTCTGTTGTTAAATTGCTGAAATCTGAGTTACCTAGGTCTGAGTCTGTGTTTTATTTTGCAGTAGAAGCTTTATTTTGTTCTAAATTTAAATGCCCTATTGTTGCCTTTTAAAAAAAA]

[+] EMBL CB000757             [ATCCTCTACTG GTTCTTCGTCTTCAACACTGCTGCTGCTCGTTCTGCTTCGATCTGTGGCTGCTGCTTCTGCCTCTACACCAGGGACGCCAAGCTACTGCTGGTGCTTCAAGCTCTACTTCCAGGACGCCGATCTGCAACCTTCTTCTTCACTGCTGCCTAAAAATCTTCATCCTACTTCCAGTGCTTCGACAACAGTTTCATCACTTGGGTTTATTCTTTCCTATCCTCAGTTAGATAAAAACTTGTGCTTTATTTCAGAGATTTGATCACTGTGATTGTAAATTTACTTTCCTGCACTTCTAATACTGGAACATAGTGTTTTTTTTGTCCAGATTAGCTTCTCTGTTGTTAAATTGCTGAAATCTGAGTTACCTAGGTCTGAGTCTGTGTTTTATTTTGCAGTAGAAGCTTTATTTTGTTCTAAATTTAAATGCCCTATTGTTGCCTTTTAAAAAAAA]
[+] EMBL CB001044             [ATCCTCTACTGAGGTCTTCGTCTTCAACACTGCTGCTGCTCGTTCTGCTTCGATCTGTGGCTGCTGCTTCTGCCTCTACACCAGGGACGCCAAGCTACTGCTGGTGCTTCAAGCTCTACTTCCAGGACGCCGATCTGCAACCTTCTTCTTCACTGCTGCCTAAAAATCTTCATCCTACTTCCAGTGCTTCGACAACAGTTTCATCACTTGGGTTTATTCTTTCCTATCCTCAGTTAGATAAAAACTTGTGCTTTATTTC                                                                                                                                                                                                          ]


>consensus_7777#1 ATCCTCTACTGGTTCTTCGTCTTCAACACTGCTGCTGCTCGTTCTGCTTCGATCTGTGGC TGCTGCTTCTGCCTCTACACCAGGGACGCCAAGCTACTGCTGGTGCTTCAAGCTCTACTT CCAGGACGCCGATCTGCAACCTTCTTCTTCACTGCTGCCTAAAAATCTTCATCCTACTTC CAGTGCTTCGACAACAGTTTCATCACTTGGGTTTATTCTTTCCTATCCTCAGTTAGATAA AAACTTGTGCTTTATTTCAGAGATTTGATCACTGTGATTGTAAATTTACTTTCCTGCACT TCTAATACTGGAACATAGTGTTTTTTTTGTCCAGATTAGCTTCTCTGTTGTTAAATTGCT GAAATCTGAGTTACCTAGGTCTGAGTCTGTGTTTTATTTTGCAGTAGAAGCTTTATTTTG TTCTAAATTTAAATGCCCTATTGTTGCCTTTTAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7777#0      ACNCTCCACAAAAAAATTCACAAATCGATACTCCTCTTCCTCGCTGCGCCACCACGCCGC 60
consensus_7777#1      ------------------------------------------------------------
                                                                                  

consensus_7777#0      CGTCGCCGGAGACCGGCCATAGCCGGCAACGTCCTCACCACCACCTGCTGCAAGCCCTCC 120
consensus_7777#1      ------------------------------------------------------------
                                                                                  

consensus_7777#0      CCCACAGCCTTCGGTTGCTGCTGCTTCAGTTTCCTCCAAGTGCGAGACGACCCGATCTGC 180
consensus_7777#1      ------------------------------------------------------------
                                                                                  

consensus_7777#0      ATCCTCTACTGGTTCTTCGTCTTCAACACTGCTGCTGCTCGTTCTGCTNCGATCTGTGGC 240
consensus_7777#1      ATCCTCTACTGGTTCTTCGTCTTCAACACTGCTGCTGCTCGTTCTGCTTCGATCTGTGGC 60
                      ************************************************ ***********

consensus_7777#0      TGCTGNTTCTGCCTCTACACCGGGGACGCCAAGCTACNGCTGGTGCTTCAAGCTCTACTT 300
consensus_7777#1      TGCTGCTTCTGCCTCTACACCAGGGACGCCAAGCTACTGCTGGTGCTTCAAGCTCTACTT 120
                      ***** *************** *************** **********************

consensus_7777#0      CCAGGACGCCGATCTGCANCCTTCTTCTTCACTGCTGCCTAAAAATCTTCATCCTACTTC 360
consensus_7777#1      CCAGGACGCCGATCTGCAACCTTCTTCTTCACTGCTGCCTAAAAATCTTCATCCTACTTC 180
                      ****************** *****************************************

consensus_7777#0      CAGTGCTTCAACAACAGTTTCATCACTTGGGTTTATTCTTTCCTATCCTCACTTCTTANA 420
consensus_7777#1      CAGTGCTTCGACAACAGTTTCATCACTTGGGTTTATTCTTTCCTATCCTCAGTT---AGA 237
                      ********* ***************************************** **   * *

consensus_7777#0      TAAAAACTTGNGCNTTATTTNAGAGATTTGATCACTGACGATTGTGAATTTACTTTCCTG 480
consensus_7777#1      TAAAAACTTGTGCTTTATTTCAGAGATTTGATCACTG-TGATTGTAAATTTACTTTCCTG 296
                      ********** ** ****** ****************  ****** **************

consensus_7777#0      CACTTCTAATACNGGNACATAGTGGTNTTTT-GNCCAGATTANNTGCTATGATGATAAAT 539
consensus_7777#1      CACTTCTAATACTGGAACATAGTGTTTTTTTTGTCCAGATTAGCTTCTCTGTTGTTAAAT 356
                      ************ ** ******** * **** * ********  * ** ** ** *****

consensus_7777#0      TGCTGCANTCTGAGTTACCTAGNT--GGCTACGGGNACTATAATTTNGTAGAT------- 590
consensus_7777#1      TGCTGAAATCTGAGTTACCTAGGTCTGAGTCTGTGTTTTATTTTGCAGTAGAAGCTTTAT 416
                      ***** * ************** *  *  *  * *   ***  *   *****        

consensus_7777#0      --------------------------------------------
consensus_7777#1      TTTGTTCTAAATTTAAATGCCCTATTGTTGCCTTTTAAAAAAAA 460
                                                                  




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)