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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7788#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1131 fasta sequence
[ACCTTGTAGGGAGTCTTGAAATTGATGTGGTAGGAGGATGGCGTTATATGTTTGGTTTTGGTGCTTCACTGGCAGTAATAATGGCTATTGGTATGTGGAATTTACCGCCTTCACCAAGATGGCTTCTTCTCAGGGCAGTTCAAGGAAAGGCGTCAGTGGAAGATAACAAAAAGAAGGCAATTCAGGCATTGAGATCACTGAGGGGGCGCTTTAGGAGTGACAGGGTCTTAGCAGATGAGATTGATGATACCCTTCTCTCTATTAAGGCTGCTTATGCAGAACAAGAATCTGAAGGGAACATTTGGAAGATGTTTGAGGGAGCTAGCTTGAAGGCACTCATCATTGGAGGAGGACTGGTTCTCTTCCAGCAGATAACAGGCCAGCCAAGTGTTCTATACTATGCAACTTCCATTCTTCAGACTGCTGGGTTTGCAGCTGCATCTGATGCTGCCAAAGTATCAATTTTGATTGGGTTGTTCAAGTTGTTGATGACAGGTGTTGCAGTATTTAAAGTTGACGATCTTGGAAGGCGTCCACTACTTATAGGAGGCATTGGTGGAATAGCTGTTTCACTGTTCTTATTAGCAGCTTACTACAAGATTCTGAACAGCTTCCCTTTTGTCGCT-GTTGGTGCTTTACTTCTGTATGTCGGTTCTTACCAGGTATCGTTTGGTCCAATAAGTTGGCTAATGGTTTCTGAGATCTTCCCACTCCGAACAAGAGGACGT-GGGATCAGCCTTGCAGTACTTACAAATTTCGGCTCAAATGCACTGGTGACATTTGCCTTTTCACCCTTGCAGGAATTCCTTGGACCAGCCAATATTTTCCTTCTATTTGGAGCCATATCGTTGCTCTCCCTTGTGTTTGTCATCCTAAAAGTTCCAGAGACTAAAGGACTTACATTGGAGGAGATCGAATCCAAGCTCCTGAAGTAAGCTCACT-GGTACTCAAGTTGTATG--TGTGTGTGTG-TTTTTTTTGAGGGCAAGTTGCTATGTGTTCATTAGATGAGGTTGATACGTGTCGGTGTAAATTTGTTCAGTCGATTTATGTGATTAATATAGTCGTACATGTAGTATTTTGTACATGTAAATTCTTGTTTGGACTAAAAATATTCTAGAGAAATCCAAAAAA]
[+] EMBL CA764987 [ACCTTGTAGGGAGTCTTGAAATTGATGTGGTAGGAGGATGGCGTTATATGTTTGGTTTTGGTGCTTCACTGGCAGTAATAATGGCTATTGGTATGTGGAATTTACCGCCTTCACCAAGATGGCTTCTTCTCAGGGCAGTTCAAGGAAAGGCGTCAGTGGAAGATAACAAAAAGAAGGCAATTCAGGCATTGAGATCACTGAGGGGGCGCTTTAGGAGTGACAGGGTCTTAGCAGATGAGATTGATGATACCCTTCTCTCTATTAAGGCTGCTTATGCAGAACAAGAATCTGAAGGGAACATTTGGAAGATGTTTGAGGGAGCTAGCTTGAAGGCACTCATCATTGGAGGAGGACTGGTTCTCTTCCAGCAGATAACAGGCCAGCCAAGTGTTCTATACTATGCAACTTCCATTCTTCAGACTGCTGGGTTTGCAGCTGCATCTGATGCTGCCAAAGTATCAATTTTGATTGGGTTGTTCAAGTTGTTGATGACAGGTGTTGCAGTATTTAAAGTTGACGATCTTGGAAGGCGTCCACTACTTATAGGAGGCATTGGTGGAATAGCTGTTTCACTGTTCTTATTAGCAGCTTACTACAAGATTCTGAACAGCTTCCCTTTTGTCGCTGGTTGGTGCTTTACTTCTGTATGTCGGTTCTTACCAGGTATCGTTTGGTCCAATAAGNTGGCTAATGGTTTCTGAGATCNTTCCACTCCGAACAAGANGACGTNGGGATCAGCCNTGCAGTACTTACAAATTTCGGCTCAAATGCNCTGGTGACATTTGCCTTTTCACCCT ]
[+] EMBL AK103844 [ GGAGGATGGCGTTATATGTTTGGTTTTGGTGCTCCACTGGCAGTAATAATGGCTATTGGTATGTGGAATTTACCGCCTTCACCAAGATGGCTTCTTCTCAGGGCAGTTCAAGGAAAGGCGTCAGTGGAAGATAACAAAAAGAAGGCAATTCAGGCATTGAGATCACTGAGGGGGCGCTTTAGGAGTGACAGGGTCTTAGCAGATGAGATTGATGATACCCTTCTCTCTATTAAGGCTGCTTATGCAGAACAAGAATCTGAAGGGAACATTTGGAAGATGTTTGAGGGAGCTAGCTTGAAGGCACTCATCATTGGAGGAGGACTGGTTCTCTTCCAGCAGATAACAGGCCAGCCAAGTGTTCTATACTATGCAACTTCCATTCTTCAGACTGCTGGGTTTGCAGCTGCATCTGATGCTGCCAAAGTATCAATTTTGATTGGGTTGTTCAAGTTGTTGATGACAGGTGTTGCAGTATTTAAAGTTGACGATCTTGGAAGGCGTCCACTACTTATAGGAGGCATTGGTGGAATAGCTGTTTCACTGTTCTTATTAGCAGCTTACTACAAGATTCTGAACAGCTTCCCTTTTGTCGCT GTTGGTGCTTTACTTCTGTATGTCGGTTCTTACCAGGTATCGTTTGGTCCAATAAGTTGGCTAATGGTTTCTGAGATCTTCCCACTCCGAACAAGAGGACGT GGGATCAGCCTTGCAGTACTTACAAATTTCGGCTCAAATGCACTGGTGACATTTGCCTTTTCACCCTTGCAGGAATTCCTTGGACCAGCCAATATTTTCCTTCTATTTGGAGCCATATCGTTGCTCTCCCTTGTGTTTGTCATCCTAAAAGTTCCAGAGACTAAAGGACTTACATTGGAGGAGATCGAATCCAAGCTCCTGAAGTAAGCTCACT GGTACTCAAGTTGTATG TGTGTGTGTG TTTTTTTTGAGGGCAAGTTGCTATGTGTTCATTAGATGAGGTTGATACGTGTCGGTGTAAATTTGTTCAGTCGATTTATGTGATTAATATAGTCGTACATGTAGTATTTTGTACATGTAAATTCTTGTTTGGACTAAAAATATTCTAGAGAAATCCAAAAAA]
[+] EMBL CA755897 [ CCAAGTGTTCTATACTATGCAACTTCCATTCTTCAGACTGCTGGGTTTGCAGCTGCATCTGATGCTGCCAAAGTATCAATTTTGATTGGGTTGTTCAAGTTGTTGATGACAGGTGTTGCAGTATTTAAAGTTGACGATCTTGGAAGGCGTCCACTACTTATAGGAGGCATTGGTGGAATAGCTGTTTCACTGTTCTTATTAGCAGCTTACTACAAGATTCTGAACAGCTTCCCTTTTGTCGCT GTTGGTGCTTTACTTCTGTATGTCGGTTCTTACCAGGTATCGTTTGGTCCAATAAGTTGGCTAATGGTTTCTGAGATCTTCCCACTCCGAACAAGAGGACGT GGGATCAGCCTTGCAGTACTTACAAATTTCGGCTCANATGCACTGGTGACATTTGCCTTTTCACCCTTGCAGGAATTCCTTGGACCAGCCAATATTTTCCTTCTATTTGGAGCCATATCGTTGCTCTCCCTTGTGTTTGTCATCCTAAAAGTTCCAGAGACTAAAGGACTTACATTGGAGGAGATCGAATCCNAGCTCCTGAAGTAAGCTCACTGGGTACTC AGTTGTATGNNTGTGTGTGTGTTTTTTTTTGAGGGCAAGT ]
consensusID : consensus_7788#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 697 fasta sequence
[GGAACTTTGTCAGTGGAAGATAACAAAAAGAAGGCAATTCAGGCATTGAGATCACTGAGGGGGCGCTTTAGGAGTGACAGGGTCTTAGCAGATGAGATTGATGATACCCTTCTCTCTATTAAGGCTGCTTATGCAGAACAAGAATCTGAAGGGAACATTTGGAAGATGTTTGAGGGAGCTAGCTTGAAGGCACTCATCATTGGAGGAGGACTGGTTCTCTTCCAGCAGGTTTTTGTCCTCATCAGCCCACTTGGAAGCAACACATCTAAATATGAAATCTGACCGTGCTTTGATCATCCTTTTAAATTTGAAATTATGTGCCCTAAATTTCAGTGAAAGTTATTATGTCCAAGTTGAGGTAGAAAAAGAAGAAAGATAATGACCTGTCTATTCATTTCATCCTGCTTTGGTCATTTCTTGATTTTTTAATAGTTGACTAATGTTACTTCTTTGTTATATGGAACTAAAGCACTGATATTAATTAAACTATTATTTCAGATAACAGGCCAGCCAAGTGTTCTATACTATGCAACTTCCATTCTTCAGGTACCTCTGAGTTTCTTTTCATACAAGGACAGACAGAATAAGACTTAGTTCTCCATATGGCTGTGTGCCCTGATACATACAATTAAATCCATTCTATCCTCAACAGACTGCTGGGTTTGCACCTGCATCTGATGCTGCCCAAATATCAATT]
[+] EMBL CB631981 [GGAACTTTGTCAGTGGAAGATAACAAAAAGAAGGCAATTCAGGCATTGAGATCACTGAGGGGGCGCTTTAGGAGTGACAGGGTCTTAGCAGATGAGATTGATGATACCCTTCTCTCTATTAAGGCTGCTTATGCAGAACAAGAATCTGAAGGGAACATTTGGAAGATGTTTGAGGGAGCTAGCTTGAAGGCACTCATCATTGGAGGAGGACTGGTTCTCTTCCAGCAGGTTTTTGTCCTCATCAGCCCACTTGGAAGCAACACATCTAAATATGAAATCTGACCGTGCTTTGATCATCCTTTTAAATTTGAAATTATGTGCCCTAAATTTCAGTGAAAGTTATTATGTCCAAGTTGAGGTAGAAAAAGAAGAAAGATAATGACCTGTCTATTCATTTCATCCTGCTTTGGTCATTTCTTGATTTTTTAATAGTTGACTAATGTTACTTCTTTGTTATATGGAACTAAAGCACTGATATTAATTAAACTATTATTTCAGATAACAGGCCAGCCAAGTGTTCTATACTATGCAACTTCCATTCTTCAGGTACCTCTGAGTTTCTTTTCATACAAGGACAGACAGAATAAGACTTAGTTCTCCATATGGCTGTGTGCCCTGATACATACAATTAAATCCATTCTATCCTCAACAGACTGCTGGGTTTGCACCTGCATCTGATGCTGCCCAAATATCAATT]
consensusID : consensus_7788#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 436 fasta sequence
[CAGGTATCGTTTGGTCCAATAAGTTGGCTAATGGTTTNTGAGATCTTCCCACTCCGAACAAGAGGACGTGGGATCAGCCTTGCAGTACTTACAAATTTCGGCTCAAATGCACTGGTGACATTTGCCTTTTCACCCTTGCAGGAATTCCTTGGACCAGCCAATATTTTCCTTCTATTTGGAGCCATATCGTTGCTCTCCCTTGTGTTTGTCATCCTAAAAGTTCCAGAGACTAAAGGACTTACATTGGAGGAGATCGAATCCAAGCTCCTGAAGTAAGCTCACTGGTACTCAAGTTGTATGTGTGTGTGTGTTTTTTTTGAGGGCAAGTTGCTATGTGTTCATTAGATGAGGTTGATACGTGTCGGTGTAAATTTGTTCAGTCGATTTATGTGATTAATATAGTCGTACATGTAGTATTTTGTAAAAAAAAAAAAAA]
[+] EMBL AU173874 [CAGGTATCGTTTGGTCCAATAAGTTGGCTAATGGTTTNTGAGATCTTCCCACTCCGAACAAGAGGACGTGGGATCAGCCTTGCAGTACTTACAAATTTCGGCTCAAATGCACTGGTGACATTTGCCTTTTCACCCTTGCAGGAATTCCTTGGACCAGCCAATATTTTCCTTCTATTTGGAGCCATATCGTTGCTCTCCCTTGTGTTTGTCATCCTAAAAGTTCCAGAGACTAAAGGACTTACATTGGAGGAGATCGAATCCAAGCTCCTGAAGTAAGCTCACTGGTACTCAAGTTGTATGTGTGTGTGTGTTTTTTTTGAGGGCAAGTTGCTATGTGTTCATTAGATGAGGTTGATACGTGTCGGTGTAAATTTGTTCAGTCGATTTATGTGATTAATATAGTCGTACATGTAGTATTTTGTAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7788#0 ACCTTGTAGGGAGTCTTGAAATTGATGTGGTAGGAGGATGGCGTTATATGTTTGGTTTTG 60
consensus_7788#2 ------------------------------------------------------------
consensus_7788#1 ------------------------------------------------------------
consensus_7788#0 GTGCTTCACTGGCAGTAATAATGGCTATTGGTATGTGGAATTTACCGCCTTCACCAAGAT 120
consensus_7788#2 ------------------------------------------------------------
consensus_7788#1 ------------------------------------------------------------
consensus_7788#0 GGCTTCTTCTCAGGGCAGTTCAAGGAAAGGCGTCAGTGGAAGATAACAAAAAGAAGGCAA 180
consensus_7788#2 ------------------------------------------------------------
consensus_7788#1 ------------------------------------------------------------
consensus_7788#0 TTCAGGCATTGAGATCACTGAGGGGGCGCTTTAGGAGTGACAGGGTCTTAGCAGATGAGA 240
consensus_7788#2 ------------------------------------------------------------
consensus_7788#1 ------------------------------------------------------------
consensus_7788#0 TTGATGATACCCTTCTCTCTATTAAGGCTGCTTATGCAGAACAAGAATCTGAAGGGAACA 300
consensus_7788#2 ------------------------------------------------------------
consensus_7788#1 ------------------------------------------------------------
consensus_7788#0 TTTGGAAGATGTTTGAGGGAGCTAGCTTGAAGGCACTCATCATTGGAGGAGGACTGGTTC 360
consensus_7788#2 ------------------------------------------------------------
consensus_7788#1 ------------------------------------------------------------
consensus_7788#0 TCTTCCAGCAGATAACAGGCCAGCCAAGTGTTCTATACTATGCAACTTCCATTCTTCAGA 420
consensus_7788#2 ------------------------------------------------------------
consensus_7788#1 ------------------------------------------------GGAACTTTGTCA 12
consensus_7788#0 CTGCTGGGTTTGCAGCTGCATCTGATGCTGCCAAAGTATCAATTTTGATTGGGTTGTTCA 480
consensus_7788#2 ------------------------------------------------------------
consensus_7788#1 GTGGAAGATAACAAAAAGAAGGCAATTCAGGCATTGAGATCACTGAGGGGGCGCTTTAGG 72
consensus_7788#0 AGTTGTTGATGACAGGTGTTGCAGTATTTAAAGTTGACGATCTTGGAAGGCGTCCACTAC 540
consensus_7788#2 ------------------------------------------------------------
consensus_7788#1 AGTGACAGGGTCTTAGCAGATGAGATTGATGATACCCTTCTCTCTATTAAGGCTGCTTAT 132
consensus_7788#0 TTATAGGAGGCATTGGTGGAATAGCTGTTTCACTGTTCTTATTAGCAGCTTACTACAAGA 600
consensus_7788#2 ------------------------------------------------------------
consensus_7788#1 GCAGAACAAGAATCTGAAGGGAACATTTGGAAGATGTTTGAGGGAGCTAGCTTGAAGGCA 192
consensus_7788#0 TTCTGAACAGCTTCCCTTTTGTCGCTGTTGGTGCTTTACTTCTGTATGTCGGTTCTTACC 660
consensus_7788#2 -----------------------------------------------------------C 1
consensus_7788#1 CTCATCATTGGAGGAGGACTGGTTCTCTTCCAGCAGGTTTTTGTCCTCATCAGCCCACTT 252
consensus_7788#0 AGGTATCGTTTGGTCCAATAAGTTGGCTAATGGTTTCTGAGATCTTCCCACTCCGAACAA 720
consensus_7788#2 AGGTATCGTTTGGTCCAATAAGTTGGCTAATGGTTTNTGAGATCTTCCCACTCCGAACAA 61
consensus_7788#1 GGAAGCAACACATCTAAATATGAAATCTGACCGTGCTTT-GATCATCCTTTTAAATTTGA 311
* **** * ** * ** * **** *** * *
consensus_7788#0 GAGGACGTGGGATCAGCCTTG--------CAGTACTTACAAATTTCGGCTCAAATGCACT 772
consensus_7788#2 GAGGACGTGGGATCAGCCTTG--------CAGTACTTACAAATTTCGGCTCAAATGCACT 113
consensus_7788#1 AATTATGTGCCCTAAATTTCAGTGAAAGTTATTATGTCCAAGTTGAGGTAGAAAAAGAAG 371
* * *** * * * * ** * *** ** ** *** *
consensus_7788#0 GGTGACATTTGCCTTTTCACCCTTGCAGGAATTCCTTGGACCAGCCAATATTTTCCTTCT 832
consensus_7788#2 GGTGACATTTGCCTTTTCACCCTTGCAGGAATTCCTTGGACCAGCCAATATTTTCCTTCT 173
consensus_7788#1 AAAGATAATGACCTGTCTATTCATTTCATCCTGCTTTGG-TCATTTCTTGATTTTTTAAT 430
** * * *** * * * * * * **** ** * *** * *
consensus_7788#0 ATTTGGAGCCATATCGTTGCTCTCCCTTGTGTTTGTCATCCTAAAAGTTCCAGAGACTAA 892
consensus_7788#2 ATTTGGAGCCATATCGTTGCTCTCCCTTGTGTTTGTCATCCTAAAAGTTCCAGAGACTAA 233
consensus_7788#1 AGTTGAC----TAATGTTACT-TCTTTGTTATATGGAACTAAAGCACTGATATTAATTAA 485
* *** ** *** ** ** * * * ** * * * * * * ***
consensus_7788#0 AGGACTTACATTGGAGGAGATCGAATCCAAGC-TCCTGAAGTAAGCTCACTGGTACTCAA 951
consensus_7788#2 AGGACTTACATTGGAGGAGATCGAATCCAAGC-TCCTGAAGTAAGCTCACTGGTACTCAA 292
consensus_7788#1 ACTA-TTATTTCAGATAACAGGCCAGCCAAGTGTTCTATACTATGCA-ACTTCCATTCTT 543
* * *** * ** * * * ***** * ** * ** ** *** * **
consensus_7788#0 GTTGTATGTGTGTGTGTGTTTTTTTTGAGGGCAAGTTGCTATGTG-TTCATTAGATGAGG 1010
consensus_7788#2 GTTGTATGTGTGTGTGTGTTTTTTTTGAGGGCAAGTTGCTATGTG-TTCATTAGATGAGG 351
consensus_7788#1 CAGGTACCTCTGAGTTTCTTTTCATACAAGGACAGACAGAATAAGACTTAGTTCTCCATA 603
*** * ** ** * **** * * ** ** ** * * * * *
consensus_7788#0 TTGATACGTGTCGGTGTAAATTTGTTCAGTCGATTTATGTGATTAATATA--GTCGTACA 1068
consensus_7788#2 TTGATACGTGTCGGTGTAAATTTGTTCAGTCGATTTATGTGATTAATATA--GTCGTACA 409
consensus_7788#1 TGGCTGTGTGCCCTGATACATACAATTAAATCCATTCTATCCTCAACAGACTGCTGGGTT 663
* * * *** * ** ** * * ** * * * ** * * * *
consensus_7788#0 TGTA---GTATTTTGTACATGTAAATTCTTGTTTGGACTAAAAATATTCTAGAGAAATCC 1125
consensus_7788#2 TGTA---GTATTTTGTAAAAAAAAAAAAAA------------------------------ 436
consensus_7788#1 TGCACCTGCATCTGATGCTGCCCAAATATCAATT-------------------------- 697
** * * ** * * **
consensus_7788#0 AAAAAA 1131
consensus_7788#2 ------
consensus_7788#1 ------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||