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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7793#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1209 fasta sequence
[TTTTTTAAACTAGGAAAAGAATCATAATTACGTCTATTGAAATTGTGTACAAATTGGGACATGTAAAATCAACAGTTTGCAAGCACTTCTGTCTATTAGAATTTTGCATGTAGTAAGTATAATTCACGGTTCTTCTGTTGTAGATTTGAACCGTTATTATCATCATCAAGGGTATTAGTAGTATATAAATATATGCTACTACCATTCTGTAATAGTTCACTTATCAATCATAACCAAAATTTAAATTTTTAAACTTAATTATATAGGGGTCTTTTTAATCGTGGTTAATTTTTCAGACTTGGCTTTAAAACTGATAATGACTCAAACATACAAGTTTTTTTTTAGTCTCTTCATTTCTCTATGGCTTATTGAGCTCAACTGATCACGGCTAACACAGGCAGCGAAAGAACTACTATATCACTATCAATAACACTGTTTTACGATATGTGCAACTTATCACAGAAAGCACACGAGAACTGATGTTTCACATCACACCAGTAAAAACAGGAACCAGCTTTTAACAACTGGACTTGGTAAATCTGTCTCGCAAGACAAGACATGCTGAGAGAGAAGGGGTTCCTCTTGAGGATATCTCCTCAATTTTACGTGTCATAAAAGATCATGTTAAAAACAAATAACAAATATGAGTGTCACATCACGCCTGTCCATAGCTGTTCAAACTTACAGGTTAATTTGCTGAGTGCTATATCGAGTATTTTTTAAACTATTTATAACTTCTTAAGTACTCCTGCCATCCTAAAAAGAGACAATCTATTATTGATACATCCGAGTACAATGAATCTAGATATACCCTACGTCCAGACTCATTGTATTAAAATATATCGCATCCTAGTACTATGTCGTCTTTTTTTTTAAACGAAGGGAGTAATTGAGTAAGAAGGGAGGGGACGAGAGACATTTGTGCTGTAATATTCTGATGCTCTTCATTTCATCATATATATTCTTGTACATAGATAATCAGAAGCCATATACAATTACACGGTAGCACTCAAATCCATCCACCTTCCTGTGCACCCACCCAGGTAGCATAGCAACCACCATAGCCAAAAAGGACGAGAGAGCACAAGGCCCAAACACAGCAACACTCTTCATCCCCTTCTCATAGCCACCACCACCCAACACAAAGCGCCTCCCAAAAAAACCAGAGGACGCGCGCGCGCGCACTGTCATTTCTACTCCTTCAGTCCA]
[+] EMBL CF308968 [TTTTTTAAACTAGGAAAAGAATCATAATTACGTCTATTGAAATTGTGTACAAATTGGGACATGTAAAATCAACAGTTTGCAAGCACTTCTGTCTATTAGAATTTTGCATGTAGTAAGTATAATTCACGGTTCTTCTGTTGTAGATTTGAACCGTTATTATCATCATCAAGGGTATTAGTAGTATATAAATATATGCTACTACCATTCTGTAATAGTTCACTTATCAATCATAACCAAAATTTAAATTTTTAAACTTAATTATATAGGGGTCTTTTTAATCGTGGTTAATTTTTCAGACTTGGCTTTAAAACTGATAATGACTCAAACATACAAGTTTTTTTTTAGTCTCTTCATTTCTCTATGGCTTATTGAGCTCAACTGATCACGGCTAACACAGGCAGCGAAAGAACTACTATATCACTATCAATAACACTGTTTTACGATATGTGCAACTTATCACAGAAAGCACACGAGAACTGATGTTTCACATCACACCAGTAAAAACAGGAACCAGCTTTTAACAACTGGACTTGGTAAATCTGTCTCGCAAGACAAGACATGCTGAGAGAGAAGGGGTTCCTCTTGAGGATATCTCCTCAATTTTACGTGTCATAAAAGATCATGTTAAAAACAAATAACAAATATGAGTGTCACATCACGCCTGTCCATAGCTGTTCAAACTTACAGGTTAATTTGCTGAGTGCTATATCGAGTATT ]
[-] EMBL CF308967 [ AAGACATGCTGAGAGAGAAGGGGTTCCTCTTGAGGATATCTCCTCAATTTTACGTGTCATAAAAGATCATGTTAAAAACAAATAACAAATATGAGTGTCACATCACGCCTGTCCATAGCTGTTCAAACTTACAGGTTAATTTGCTGAGTGCTATATCGAGTATTTTTTAAACTATTTATAACTTCTTAAGTACTCCTGCCATCCTAAAAAGAGACAATCTATTATTGATACATCCGAGTACAATGAATCTAGATATACCCTACGTCCAGACTCATTGTATTAAAATATATCGCATCCTAGTACTATGTCGTCTTTTTTTTTAAACGAAGGGAGTAATTGAGTAAGAAGGGAGGGGACGAGAGACATTTGTGCTGTAATATTCTGATGCTCTTCATTTCATCATATATATTCTTGTACATAGATAATCAGAAGCCATATACAATTACACGGTAGCACTCAAATCCATCCACCTTCCTGTGCACCCACCCAGGTAGCATAGCAACCACCATAGCCAAAAAGGACGAGAGAGCACAAGGCCCAAACACAGCAACACTCTTCATCCCCTTCTCATAGCCACCACCACCCAACACAAAGCGCCTCCCAAAAAAACCAGAGGACGCGCGCGCGCGCACTGTCATTTCTACTCCTTCAGTCCA]
consensusID : consensus_7793#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 546 fasta sequence
[TTTTTTTTTTTTTTTGCTGTAATATTCTGATGCTCTTCATTTCATCATATATATTCTTGTACATAGATAATCAGAAGCCATATACAATTACACGGTAGCACTCAAATCCATCCACCTT-CCTGTGCACCCACCCAGGTAGCATAGCAACCACCATAG-CCAAAAAGGACGAGAGAGCACAAGGCCCAAACACAGCAACACTCTTCATCCCCTTCTCATAGCCACCACCACCCAACACAAAGCGCCTCCCAAAAAAACCAGAGGACGCGCGCGCGCGCACTGTCAGTGTGTGCACACAGAACAGTGTACAGGAGAGCTACGATAATAACTAAAAGATAATGCTCCCTCTCTAATTAATCACCCCTCCCCTTAATTACATATATTTATATACTACTAATACCCTTGATGATGATAATAATAATAATAATAATCTTTCTCCGATCCTAACCCAAAACCCCTAGGAGCAGAGCAGAGCAGTAGCAGAGAGAGAGAGAGAGATAGCTGTCGGGAAATGTGGGTTGAAGCCGTCGGCGAAATCACCACTTGGGG]
[-] EMBL AU057836 [TTTTTTTTTTTTTTTGCTGTAATATTCTGATGCTCTTCATTTCATCATATATATTCTTGTACATAGATAATCAGAAGCCATATACAATTACACGGTAGCACTCAAATCCATCCACCTT CCTGTGCACCCACCCAGGTAGCATAGCAACCACCATAG CCAAAAAGGACGAGAGAGCACAAGGCCCAAACACAGCAACACTCTTCATCCCCTTCTCATAGCCACCACCACCCAACACAAAGCGCCTCCCAAAAAAACCAGAGGACGCGCGCGCGCGCACTGTCAGTGTGTGCACACAGAACAGTGTACAGGAGAGCTACGATAATAACTAAAAGATAATGCTCCCTCTCTAATTAATCACCCCTCCCCTTAATTACATATATTTATATACTACTAATACCCTTGATGATGATAATAATAATAATAATAATCTTTCTCCGATCCTAACCCAAAACCCCTAGGAGCAGAGCAGAGCAGTAGCAGAGAGAGAGAGAGAGATAGCTGTCGG ]
[+] EMBL CF309541 [ TTTTTTTTGTGCTGTAATATTCTGATGCTCTTCATTTCATCATATATATTCTTGTACATAGATAATCAGAAGCCATATACAATTACACGGGAGCACTCAAATCCGTCCACCTT CCTGTGCACCCACCCAGGTAGCATAGCAACCACCATAG CCAAAAAGGACGAGAGAGCACAAGGGCCAAACACAGCAACACTCTTCATCCCCTTCTCATAGCCACCACTACCCAACACAAAGCGCCTCCCAAAAAAACCAGAGGACGCGCGCGCGCGCACTGTCAGTGTGTGCACACAGAACAGTGTACAGGAGAGCTACGATAATAACTAAAAGATAATGCTCCCTCTCTAATTAATCACCCCTCCCCTTAATTACATATATTTATATACTACTAATACCCTTGATGATGATAATAATAATAATAATAATCTTTCTCCGATCCTAACCCAAAACCCCTAGGAGCAGAGCAGAGCAGTAGCAGAGAGAGAGAGAGAGATAGCTGTCGGGAAATGTGGGTTGAAGCCGTCGGCGAAATCACCACTTGGGG]
[-] EMBL AU057835 [ ATATACAATTACACGGTAGCACTCAAATCCATCCACCTTCCCTGTGCACCCACCCAGGTAGCATAGCAACCACCATAGCCCAAAAAGGACGAGAGAGCACAAGGCCCAAACACAGCAACACTCTTCATCCCCTTCTCATAGCCACCACCACCCAACACAAAGCGCCTCCCAAAAAAACCAGAGGAC CGCGCGCGCGCACTGTCAGTGTGTGCACACAGAACAGTGTACAGGAGAGCTACGATAATAACTAAAAGATAATGCTCCCTCTCTAATTAATCACCCCTCCCCTTAATTACATATATTTATATACTACTAATACCCTTGATGATGATAATAATAATAATAATAATCTTTCTCCGATCCTAACCCAAAACCCCTAGGAGCAGAGCAGAGCAGTAGCAGAGAGAGAGAGAGAGATAGCTGTCGG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7793#0 TTTTTTAAACTAGGAAAAGAATCATAATTACGTCTATTGAAATTGTGTACAAATTGGGAC 60
consensus_7793#1 ------------------------------------------------------------
consensus_7793#0 ATGTAAAATCAACAGTTTGCAAGCACTTCTGTCTATTAGAATTTTGCATGTAGTAAGTAT 120
consensus_7793#1 ------------------------------------------------------------
consensus_7793#0 AATTCACGGTTCTTCTGTTGTAGATTTGAACCGTTATTATCATCATCAAGGGTATTAGTA 180
consensus_7793#1 ------------------------------------------------------------
consensus_7793#0 GTATATAAATATATGCTACTACCATTCTGTAATAGTTCACTTATCAATCATAACCAAAAT 240
consensus_7793#1 ------------------------------------------------------------
consensus_7793#0 TTAAATTTTTAAACTTAATTATATAGGGGTCTTTTTAATCGTGGTTAATTTTTCAGACTT 300
consensus_7793#1 ------------------------------------------------------------
consensus_7793#0 GGCTTTAAAACTGATAATGACTCAAACATACAAGTTTTTTTTTAGTCTCTTCATTTCTCT 360
consensus_7793#1 ------------------------------------------------------------
consensus_7793#0 ATGGCTTATTGAGCTCAACTGATCACGGCTAACACAGGCAGCGAAAGAACTACTATATCA 420
consensus_7793#1 ------------------------------------------------------------
consensus_7793#0 CTATCAATAACACTGTTTTACGATATGTGCAACTTATCACAGAAAGCACACGAGAACTGA 480
consensus_7793#1 ------------------------------------------------------------
consensus_7793#0 TGTTTCACATCACACCAGTAAAAACAGGAACCAGCTTTTAACAACTGGACTTGGTAAATC 540
consensus_7793#1 ------------------------------------------------------------
consensus_7793#0 TGTCTCGCAAGACAAGACATGCTGAGAGAGAAGGGGTTCCTCTTGAGGATATCTCCTCAA 600
consensus_7793#1 ------------------------------------------------------------
consensus_7793#0 TTTTACGTGTCATAAAAGATCATGTTAAAAACAAATAACAAATATGAGTGTCACATCACG 660
consensus_7793#1 ------------------------------------------------------------
consensus_7793#0 CCTGTCCATAGCTGTTCAAACTTACAGGTTAATTTGCTGAGTGCTATATCGAGTATTTTT 720
consensus_7793#1 ------------------------------------------------------------
consensus_7793#0 TAAACTATTTATAACTTCTTAAGTACTCCTGCCATCCTAAAAAGAGACAATCTATTATTG 780
consensus_7793#1 ------------------------------------------------------------
consensus_7793#0 ATACATCCGAGTACAATGAATCTAGATATACCCTACGTCCAGACTCATTGTATTAAAATA 840
consensus_7793#1 ------------------------------------------------------------
consensus_7793#0 TATCGCATCCTAGTACTATGTCGTCTTTTTTTTTAAACGAAGGGAGTAATTGAGTAAGAA 900
consensus_7793#1 ------------------------------------------------------------
consensus_7793#0 GGGAGGGGACGAGAGACATTTGTGCTGTAATATTCTGATGCTCTTCATTTCATCATATAT 960
consensus_7793#1 --------TTTTTTTTTTTTTTTGCTGTAATATTCTGATGCTCTTCATTTCATCATATAT 52
*** **************************************
consensus_7793#0 ATTCTTGTACATAGATAATCAGAAGCCATATACAATTACACGGTAGCACTCAAATCCATC 1020
consensus_7793#1 ATTCTTGTACATAGATAATCAGAAGCCATATACAATTACACGGTAGCACTCAAATCCATC 112
************************************************************
consensus_7793#0 CACCTTCCTGTGCACCCACCCAGGTAGCATAGCAACCACCATAGCCAAAAAGGACGAGAG 1080
consensus_7793#1 CACCTTCCTGTGCACCCACCCAGGTAGCATAGCAACCACCATAGCCAAAAAGGACGAGAG 172
************************************************************
consensus_7793#0 AGCACAAGGCCCAAACACAGCAACACTCTTCATCCCCTTCTCATAGCCACCACCACCCAA 1140
consensus_7793#1 AGCACAAGGCCCAAACACAGCAACACTCTTCATCCCCTTCTCATAGCCACCACCACCCAA 232
************************************************************
consensus_7793#0 CACAAAGCGCCTCCCAAAAAAACCAGAGGACGCGCGCGCGCGCACTGTCATTTCTACTCC 1200
consensus_7793#1 CACAAAGCGCCTCCCAAAAAAACCAGAGGACGCGCGCGCGCGCACTGTCAGTG-TGTGCA 291
************************************************** * * *
consensus_7793#0 TTCAGTCCA--------------------------------------------------- 1209
consensus_7793#1 CACAGAACAGTGTACAGGAGAGCTACGATAATAACTAAAAGATAATGCTCCCTCTCTAAT 351
*** **
consensus_7793#0 ------------------------------------------------------------
consensus_7793#1 TAATCACCCCTCCCCTTAATTACATATATTTATATACTACTAATACCCTTGATGATGATA 411
consensus_7793#0 ------------------------------------------------------------
consensus_7793#1 ATAATAATAATAATAATCTTTCTCCGATCCTAACCCAAAACCCCTAGGAGCAGAGCAGAG 471
consensus_7793#0 ------------------------------------------------------------
consensus_7793#1 CAGTAGCAGAGAGAGAGAGAGAGATAGCTGTCGGGAAATGTGGGTTGAAGCCGTCGGCGA 531
consensus_7793#0 ---------------
consensus_7793#1 AATCACCACTTGGGG 546
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||