cluster # 7800

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Oryza sativa
cluster # 7800 cluster # 7800 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7800#0 length = 788 sequences # 1

consensus_7800#1 length = 418 sequences # 4

consensusID : consensus_7800#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 788
fasta sequence

                              [TACCATAGCAAGTAGTTTCACAATGGCTAGCACTAAGCTAGTAGCTCTTGGCTTCGTTGTTCTCTTGAGCATGGGACTGGCCAATGCCGCAAGGGTGGCTAGATACTCGAGTTCCGACGGAAATGGCAGCGGAGGGGGACGGACCCCCCCCTCCCCCCCCCCCCTCCCCCCGCACCTACTCACCCCCCCCACTCCCCCTCACCCCCCCCGCTCACCCCCCCCCCCACAATCACTCCCGCCCCCCCTCAGGCCCTCCCAGTCCCCTCACCACATCACCAGCACATGCCCACATCGGCGTCCACCACTCCCCGTCCCCCCTCCCTCTCCTGAGCTAATCCCCTTCGGAATAATCCACAGCCGCCCCGTTTTCTTAGCAATATACCCCCCGAAATCAAGTTTATACCCCCCNGCGCAACCCTTTGGCGTCCCCTCATGTTTATTCCCTAATATCTTATCTNGAACACGCCCCTTCGTNTGTTGTCTCTCTTTTATTTAAAACCTCCCCCANNGAACATGTCCCTTACACACAACACGCCCGTTACATTTTNNCNNACGTGCGTTTAACTCCACTTTGTTCTTTNANCAATGTGCGACCTAAAACCATTTNNTTCTCTAGAAGGCGATTNTCCAACGTTTCTCTCTGTTATCTTACATTTTTCTTCTCTTCTNCGCNGCCCCACTCTTCATTNTGTANTTTGTGGCCTNCCNATCNCATCTNNNCNTGTTNCNNNNTCACTCCCCTCACCGNNTGAGGTCCANNTGTTGTCCCCACTCCTGTATTTGTATCT]

[+] EMBL CA753570             [TACCATAGCAAGTAGTTTCACAATGGCTAGCACTAAGCTAGTAGCTCTTGGCTTCGTTGTTCTCTTGAGCATGGGACTGGCCAATGCCGCAAGGGTGGCTAGATACTCGAGTTCCGACGGAAATGGCAGCGGAGGGGGACGGACCCCCCCCTCCCCCCCCCCCCTCCCCCCGCACCTACTCACCCCCCCCACTCCCCCTCACCCCCCCCGCTCACCCCCCCCCCCACAATCACTCCCGCCCCCCCTCAGGCCCTCCCAGTCCCCTCACCACATCACCAGCACATGCCCACATCGGCGTCCACCACTCCCCGTCCCCCCTCCCTCTCCTGAGCTAATCCCCTTCGGAATAATCCACAGCCGCCCCGTTTTCTTAGCAATATACCCCCCGAAATCAAGTTTATACCCCCCNGCGCAACCCTTTGGCGTCCCCTCATGTTTATTCCCTAATATCTTATCTNGAACACGCCCCTTCGTNTGTTGTCTCTCTTTTATTTAAAACCTCCCCCANNGAACATGTCCCTTACACACAACACGCCCGTTACATTTTNNCNNACGTGCGTTTAACTCCACTTTGTTCTTTNANCAATGTGCGACCTAAAACCATTTNNTTCTCTAGAAGGCGATTNTCCAACGTTTCTCTCTGTTATCTTACATTTTTCTTCTCTTCTNCGCNGCCCCACTCTTCATTNTGTANTTTGTGGCCTNCCNATCNCATCTNNNCNTGTTNCNNNNTCACTCCCCTCACCGNNTGAGGTCCANNTGTTGTCCCCACTCCTGTATTTGTATCT]




>consensus_7800#0
TACCATAGCAAGTAGTTTCACAATGGCTAGCACTAAGCTAGTAGCTCTTGGCTTCGTTGT
TCTCTTGAGCATGGGACTGGCCAATGCCGCAAGGGTGGCTAGATACTCGAGTTCCGACGG
AAATGGCAGCGGAGGGGGACGGACCCCCCCCTCCCCCCCCCCCCTCCCCCCGCACCTACT
CACCCCCCCCACTCCCCCTCACCCCCCCCGCTCACCCCCCCCCCCACAATCACTCCCGCC
CCCCCTCAGGCCCTCCCAGTCCCCTCACCACATCACCAGCACATGCCCACATCGGCGTCC
ACCACTCCCCGTCCCCCCTCCCTCTCCTGAGCTAATCCCCTTCGGAATAATCCACAGCCG
CCCCGTTTTCTTAGCAATATACCCCCCGAAATCAAGTTTATACCCCCCNGCGCAACCCTT
TGGCGTCCCCTCATGTTTATTCCCTAATATCTTATCTNGAACACGCCCCTTCGTNTGTTG
TCTCTCTTTTATTTAAAACCTCCCCCANNGAACATGTCCCTTACACACAACACGCCCGTT
ACATTTTNNCNNACGTGCGTTTAACTCCACTTTGTTCTTTNANCAATGTGCGACCTAAAA
CCATTTNNTTCTCTAGAAGGCGATTNTCCAACGTTTCTCTCTGTTATCTTACATTTTTCT
TCTCTTCTNCGCNGCCCCACTCTTCATTNTGTANTTTGTGGCCTNCCNATCNCATCTNNN
CNTGTTNCNNNNTCACTCCCCTCACCGNNTGAGGTCCANNTGTTGTCCCCACTCCTGTAT
TTGTATCT

consensusID : consensus_7800#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 418
fasta sequence

                              [CATAGCAAGTAGTTTCACAATGGCTAGCACTAAGCTAGTAGCTCTTGGCTTCGTTGTTCTCTTGAGCATGGGACTGGCCAATGCCGCAAGGGTGTCTAGATACTCGAGTTCCGACGGAAATGGCAGCGGAGGGGGAGGGGGTACTGCGTATGACAATGGTGGTGCCGCAGGGTCTGGGAGCGGTTATGGCGTCAGTCAGGGTGGTAGTAATGGTGCCCATGCAACTGCTGGAGGGAGCGGCGGCGGCGGTGGTTCTAGCCAATATGGTGGATCGGCATATGGTTCTGGAAATGGCTCAGGCTCAAGCTCTAGTCAGACTAGCAATGGGGAAGGAGGTTATGGTGGTGAGTCCGATGCCGGTGGTGGTNGCGGTNGCGGATGACATTGACTAGTTGTACACTCTACCTAAGACTGATGG]

[+] EMBL OSR18161A            [CATAGCAAGTAGTTTCACAATGGCTAGCACTAAGCTAGTAGCTCTTGGCTTCGTTGTTCTCTTGAGCATGGGACTGGCCAATGCCGCAAGGGTGTCTAGATACTCGAGTTCCGACGGAAATGGCAGCGGAGGGGGAGGGGGTACTGCGTATGACAATGGTGGTGCCGCAGGGTCTGGGAGCGGTTATGGCGTCAGTCAGGGTGGTAGTAATGGTGCCCATGCAACTGCTGGAGGGAGCGGCGGCGGCGGTGGTTCTAGCCAATATGGTGGATCGGCATATGGTTCTGGAAATGGCTCAGGCTCAAGCTCTAGTCAGACTAGCAATGGGGAAGGAGGTTATGGTGGTGAGTCCGATGCCGGTGGTGGTNGCGGTN                                            ]
[+] EMBL OSR18191A            [CATAGCAAGTAGTTTCACAATGGCTAGCACTAAGCTAGTAGCTCTTGGCTTCGTTGTTCTCTTGAGCATGGGACTGGCCAATGCCGCAAGGGTGTCTAGATACTCGAGTTCCGACGGAAATGGCAGCGGAGGGGGAGGGGGTACTGCGTATGACAATGGTGGTGCCGCAGGGTCTGGGAGCGGTTATGGCGTCAGTCAGGGTGGTAGTAATGGTGCCCATGCAACTGCTGGAGGGAGCGGCGGCGGCGGTGGTTCTAGCCAATATGGTGGATCGGCATATGGTTCTGGAAATGGCTCAGGCTCAAGCTCTAGTCAGACTAGCAATGGGGAAGGAGGTTATGG                                                                            ]
[+] EMBL CA756718             [                                                                                                                                                                                      GTTATGGCGTCAGTCAGGGTGGTAGTAATGGTGCCCATGCAACTGCTGGAGGGAGCGGCGGCGGCGGTGGTTCTAGCCAATATGGTGGATCGGCATATGGTTCTGGAAATGGCTCAGGCTCAAGCTCTAGTCAGACTAGCAATGGGGAAGGAGGTTATGGTGGTGAGTCCAATGCCGGAGGTGGTGGTTATGGCGGATGACATTGACTAGTTGTACACTCTACCTAAGACTGATGG]
[+] EMBL CA758099             [                                                                                                                                                                                                                                      GAGGGAGCGGCGGCGGCGGTGGTTCTAGCCAATATGGTGGATCGGCATATGGTTCTGGAAATGGCTCAGGCTCAAGCTCTAGTCAGACTAGCAATGGGGAAGGAGGTTATGGTGGTGAG                                                                     ]




>consensus_7800#1
CATAGCAAGTAGTTTCACAATGGCTAGCACTAAGCTAGTAGCTCTTGGCTTCGTTGTTCT
CTTGAGCATGGGACTGGCCAATGCCGCAAGGGTGTCTAGATACTCGAGTTCCGACGGAAA
TGGCAGCGGAGGGGGAGGGGGTACTGCGTATGACAATGGTGGTGCCGCAGGGTCTGGGAG
CGGTTATGGCGTCAGTCAGGGTGGTAGTAATGGTGCCCATGCAACTGCTGGAGGGAGCGG
CGGCGGCGGTGGTTCTAGCCAATATGGTGGATCGGCATATGGTTCTGGAAATGGCTCAGG
CTCAAGCTCTAGTCAGACTAGCAATGGGGAAGGAGGTTATGGTGGTGAGTCCGATGCCGG
TGGTGGTNGCGGTNGCGGATGACATTGACTAGTTGTACACTCTACCTAAGACTGATGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7800#0      TACCATAGCAAGTAGTTTCACAATGGCTAGCACTAAGCTAGTAGCTCTTGGCTTCGTTGT 60
consensus_7800#1      ---CATAGCAAGTAGTTTCACAATGGCTAGCACTAAGCTAGTAGCTCTTGGCTTCGTTGT 57
                         *********************************************************

consensus_7800#0      TCTCTTGAGCATGGGACTGGCCAATGCCGCAAGGGTGGCTAGATACTCGAGTTCCGACGG 120
consensus_7800#1      TCTCTTGAGCATGGGACTGGCCAATGCCGCAAGGGTGTCTAGATACTCGAGTTCCGACGG 117
                      ************************************* **********************

consensus_7800#0      AAATGGCAGCGGAGGGGGACGGACCCCCCCCTCCCCCCCCCCCCTCCCCCCGCACCTACT 180
consensus_7800#1      AAATGGCAGCGGAGGGGGAGGGGGTACTGCGTATGACAATGGTGGTGCCGCAGGGTCTGG 177
                      ******************* **    *  * *    *          ** *         

consensus_7800#0      CACCCCCCCCACTCCCCCTCACCCCCCCCGCTCACCCCCCCCCCCACAATCACTCCCG-- 238
consensus_7800#1      GAGCGGTTATGGCGTCAGTCAGGGTGGTAG--TAATGGTGCCCATGCAACTGCTGGAGGG 235
                       * *           *  ***        *   *      ***   ***   **   *  

consensus_7800#0      --CCCCCCCTCAGGCCCTCCCAGTCCCCTCACCACATCACCAGCACATGCCCACATCGGC 296
consensus_7800#1      AGCGGCGGCGGCGGTGGTTCTAGCCAATATGGTGGATCGGCATATGGTTCTGGAAATGGC 295
                        *  *  *   **   * * ** *          ***  **     * *    *  ***

consensus_7800#0      GTCCAC-CACTCCCCGTCCCCCCTCCCTCTCCTGAGCTAATCCCCTTCGGAATAATCCAC 355
consensus_7800#1      TCAGGCTCAAGCTCTAGTCAGACTAGCAATGGGGAAGGAGGTTATGGTGGTG-AGTCCGA 354
                           * **  * *    *   **  *  *   **   *         **   * ***  

consensus_7800#0      AGCCGCCCCGTTTTCTTAGCAATATACCCCCCGAAATCAAGT--TTATACCCCCCNGCGC 413
consensus_7800#1      TGCCG----GTGGTGGTNGCGGTN--GCGGATGACATTGACTAGTTGTACACTCTACCTA 408
                       ****    **  *  * **  *    *    ** **  * *  ** *** * *   *  

consensus_7800#0      AACCCTTTGGCGTCCCCTCATGTTTATTCCCTAATATCTTATCTNGAACACGCCCCTTCG 473
consensus_7800#1      AGACTGATGG-------------------------------------------------- 418
                      *  *   ***                                                  

consensus_7800#0      TNTGTTGTCTCTCTTTTATTTAAAACCTCCCCCANNGAACATGTCCCTTACACACAACAC 533
consensus_7800#1      ------------------------------------------------------------
                                                                                  

consensus_7800#0      GCCCGTTACATTTTNNCNNACGTGCGTTTAACTCCACTTTGTTCTTTNANCAATGTGCGA 593
consensus_7800#1      ------------------------------------------------------------
                                                                                  

consensus_7800#0      CCTAAAACCATTTNNTTCTCTAGAAGGCGATTNTCCAACGTTTCTCTCTGTTATCTTACA 653
consensus_7800#1      ------------------------------------------------------------
                                                                                  

consensus_7800#0      TTTTTCTTCTCTTCTNCGCNGCCCCACTCTTCATTNTGTANTTTGTGGCCTNCCNATCNC 713
consensus_7800#1      ------------------------------------------------------------
                                                                                  

consensus_7800#0      ATCTNNNCNTGTTNCNNNNTCACTCCCCTCACCGNNTGAGGTCCANNTGTTGTCCCCACT 773
consensus_7800#1      ------------------------------------------------------------
                                                                                  

consensus_7800#0      CCTGTATTTGTATCT 788
consensus_7800#1      ---------------