|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7803#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1223 fasta sequence
[TCGAGCACTCCGTTCTCCCGGGTCTCCGGTGCTGCTCCCGCCGCAGCCGGACACCCGAACGCGAAGCTCCAACTCTCCAATGCTCCCCTCGTCTCGTTACCTCCTCGCCCCGGCCCCACTTCCCGCCATGGTGGTACGGCCACCGCCGCCGCATCCACCGAGCCGCGGAACTTCCCCTCTCGCTCGGCCACCATTGTGCCGCGCCATGGCGCGGGCCGCCCCCTCGCTCTCTGCCGCGGCCTCGACGGCTGCCTCCTCCTCGACGACTCCTGCCAAGAAGAAGGTTCTCTTGCCCATCGCCATGGGCACGGAGGAGATGGAGGCAGTCATCCTTGCCGGTGTACTCCGCCGAGCCGGCGCCGACGTGACGCTGGCATCCGTGGAGGACGGCCTCGAGGTGGAGGCCTCGCGTGGCTCCCACATCGTTGCTGACAAGCGCATTGCCGCTTGTGCAGACCAGGTGTTCGACCTCGTGGCTCTCCCGGGTGGAATGCCTGGTTCAGTGCGGTTGAGAGACAGTGTGATCCTTCAGAGGATCACAGTTAGACAGGCTGAGGAAAAAAGATTGTATGGTGCTATATGTGCTGCACCAGCTGTTGTTCTCATGCCGTGGGGCCTCCACAAGAGAAAAAAGATCACTTGTCACCCATCCTTTATAGAAGATCTCCCAACATTCCGAACTGTTGAATCAAATGTTCAGGTGTCTGGAGAGCTAACAACAAGCCGTGGACCAGGGACAGCATTTCAGTTTGCTTTATCATTTGTAGAGCAGTT-GTTTGGGCCTTGTAAAGCTGAAGATATGGACAACACTTTGTTGACAAAGGTTGACGATAATCTTGAAAGAAGTATTGAAGTCAACGAAATTGAGTGGTCTTCTGATCACAATCCTCATGTTCTCATTCCAATTGCAAATGGTTCAGGAGAGATGGAGATAATAATGTTGACGGATGTTTTACGGCGAGCAAATGTAAATGTGGTGTTGGCATCAGTTGAAAAATCAACAAGTATTGTCGGGTCCCAAAGGATGAGGATTGTTGCTGATAAATGCATTTCAGATGCTTCTGCCTTAGAATATGATCTAATTATCCTTCCTGGAGGACCTGCCGGAGCTGAGAGACTGCACAAGTCCAGTGTTCTTAAGAAATTACTCAAGGAACAAAAGCAAACAGGCAGGATGTATGGTGGGATCTGTTCTTCTCCTGTGATCTTGCAGAAGCAGGGTT]
[+] EMBL AK102422 [TCGAGCACTCCGTTCTCCCGGGTCTCCGGTGCTGCTCCCGCCGCAGCCGGACACCCGAACGCGAAGCTCCAACTCTCCAATGCTCCCCTCGTCTCGTTACCTCCTCGCCCCGGCCCCACTTCCCGCCATGGTGGTACGGCCACCGCCGCCGCATCCACCGAGCCGCGGAACTTCCCCTCTCGCTCGGCCACCATTGTGCCGCGCCATGGCGCGGGCCGCCCCCTCGCTCTCTGCCGCGGCCTCGACGGCTGCCTCCTCCTCGACGACTCCTGCCAAGAAGAAGGTTCTCTTGCCCATCGCCATGGGCACGGAGGAGATGGAGGCAGTCATCCTTGCCGGTGTACTCCGCCGAGCCGGCGCCGACGTGACGCTGGCATCCGTGGAGGACGGCCTCGAGGTGGAGGCCTCGCGTGGCTCCCACATCGTTGCTGACAAGCGCATTGCCGCTTGTGCAGACCAGGTGTTCGACCTCGTGGCTCTCCCGGGTGGAATGCCTGGTTCAGTGCGGTTGAGAGACAGTGTGATCCTTCAGAGGATCACAGTTAGACAGGCTGAGGAAAAAAGATTGTATGGTGCTATATGTGCTGCACCAGCTGTTGTTCTCATGCCGTGGGGCCTCCACAAGAGAAAAAAGATCACTTGTCACCCATCCTTTATAGAAGATCTCCCAACATTCCGAACTGTTGAATCAAATGTTCAGGTGTCTGGAGAGCTAACAACAAGCCGTGGACCAGGGACAGCATTTCAGTTTGCTTTATCATTTGTAGAGCAGTT GTTTGGGCCTTGTAAAGCTGAAGATATGGACAACACTTTGTTGACAAAGGTTGACGATAATCTTGAAAGAAGTATTGAAGTCAACGAAATTGAGTGGTCTTCTGATCACAATCCTCATGTTCTCATTCCAATTGCAAATGGTTCAGGAGAGATGGAGATAATAATGTTGACGGATGTTTTACGGCGAGCAAATGTAAATGTGGTGTTGGCATCAGTTGAAAAATCAACAAGTATTGTCGGGTCCCAAAGGATGAGGATTGTTGCTGATAAATGCATTTCAGATGCTTCTGCCTTAGAATATGATCTAATTATCCTTCCTGGAGGACCTGCCGGAGCTGAGAGACTGCACAAGTCCAGTGTTCTTAAGAAATTACTCAAGGAACAAAAGCAAACAGGCAGGATGTATGGTGGGATCTGTTCTTCTCCTGTGATCTTGCAGAAGCAGGGTT]
[+] EMBL CF323982 [ CAGTCATCCTTGCCGGTGTACTCCGCCGAGCCGGCGCCGACGTGACGCTGGCATCCGTGGAGGACGGCCTCGAGGTGGAGGCCTCGCGTGGCTCCCACATCGTTGCTGACAAGCGCATTGCCGCTTGTGCAGACCAGGTGTTCGACCTCGTGGCTCTCCCGGGTGGAATGCCTGGTTCAGTGCGGTTGAGAGACAGTGTGATCCTTCAGAGGATCACAGTTAGACAGGCTGAGGAAAAAAGATTGTATGGTGCTATATGTGCTGCACCAGCTGTTGTTCTCATGCCGTGGGGCCTCCACAAGAGAAAAAAGATCACTTGTCACCCATCCTTTATAGAAGATCTCCCAACATTCCGAACTGTTGAATCAAATGTTCAGGTGTCTGGAGAGCTAACAACAAGCCGTGGACCAGGGACAGCATTTCAGTTTGCTTTATCATTTGTAGAGCAGTTGGTTTGGGCCTTGTAAAGCTGAAGATA ]
consensusID : consensus_7803#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 944 fasta sequence
[TTGTTCCAGGCTCGAGCACTCCGTTCTCCCGGGTCTCCGGTGCTGCTCCCGC-CGCAGCCGGACACCCGAACGCGAAGCTCCAACTCTCCAATG-CTCCCCTCGTCTCGTTACCTCCTCGCCCCGGCCCCACTTCCCGCCATGGTGGTACGGCCACCGCCGCCGCATCCACCGAGCCGCGGAACTTCCCCTCTCGCTCGGCCACCATTGTGCCGCGCCATGGCGCGGGCCGCCCCCTCGCTCTCTGCCGCGGCCTCGACGGCTGCCTCCTCCTCGACGACTCCTGCCAAGAAGAAGGTTCTCTTGCCCATCGCCATGGGCACGGAGGAGATGGAGGCAGTCATCCTTGCCGGTGTACTCCGCCGAGCCGGCGCCGACGTGACGCTGGCATCCGTGGAGGACGGCCTCGAGGTGGAGGCCTCGCGTGGCTCCCACATCGTTGCTGACAAGCGCATTGCCGCTTGTGCAGACCAGGTGTTCGACCTCGTGGCTCTCCCGTTGACAAAGGTTGACGATAATCTTGAAAGAAGTATTGAAGTCAACGAAATTGAGTGGTCTTCTGATCACAATCCTCATGTTCTCATTCCAATTGCAAATGGTTCAGAAGAGATGGAGATAATAATGTTGACGGATGTTTTACGGCGAGCAAATGTAAATGTGGTGTTGGCATCAGTTGAAAAATCAACAAGTATTGTCGGGTCCCAAAGGATGAGGATTGTTGCTGATAAATGCATTTCAGATGCTTCTGCCTTAGAATATGATCTAATTATCCTTCCTGTGAGCTATTTCTCATTTCATATTTTCATTTAGATATCATAAATGCCGACATATAAGTTCATTGTTGTTCCTACAAGATATTTTGCATATAGCTGGTTCATGGACTGGTACAAATCCCCATCTTATCATCATCATGATGCTTGCTTTTAACCTTATCTTGAATGTAGCTG]
[+] EMBL AK071101 [TTGTTCCAGGCTCGAGCACTCCGTTCTCCCGGGTCTCCGGTGCTGCTCCCGC CGCAGCCGGACACCCGAACGCGAAGCTCCAACTCTCCAATG CTCCCCTCGTCTCGTTACCTCCTCGCCCCGGCCCCACTTCCCGCCATGGTGGTACGGCCACCGCCGCCGCATCCACCGAGCCGCGGAACTTCCCCTCTCGCTCGGCCACCATTGTGCCGCGCCATGGCGCGGGCCGCCCCCTCGCTCTCTGCCGCGGCCTCGACGGCTGCCTCCTCCTCGACGACTCCTGCCAAGAAGAAGGTTCTCTTGCCCATCGCCATGGGCACGGAGGAGATGGAGGCAGTCATCCTTGCCGGTGTACTCCGCCGAGCCGGCGCCGACGTGACGCTGGCATCCGTGGAGGACGGCCTCGAGGTGGAGGCCTCGCGTGGCTCCCACATCGTTGCTGACAAGCGCATTGCCGCTTGTGCAGACCAGGTGTTCGACCTCGTGGCTCTCCCGTTGACAAAGGTTGACGATAATCTTGAAAGAAGTATTGAAGTCAACGAAATTGAGTGGTCTTCTGATCACAATCCTCATGTTCTCATTCCAATTGCAAATGGTTCAGAAGAGATGGAGATAATAATGTTGACGGATGTTTTACGGCGAGCAAATGTAAATGTGGTGTTGGCATCAGTTGAAAAATCAACAAGTATTGTCGGGTCCCAAAGGATGAGGATTGTTGCTGATAAATGCATTTCAGATGCTTCTGCCTTAGAATATGATCTAATTATCCTTCCTGTGAGCTATTTCTCATTTCATATTTTCATTTAGATATCATAAATGCCGACATATAAGTTCATTGTTGTTCCTACAAGATATTTTGCATATAGCTGGTTCATGGACTGGTACAAATCCCCATCTTATCATCATCATGATGCTTGCTTTTAACCTTATCTTGAATGTAGCTG]
[+] EMBL CB641188 [ gatcaCCGCTCGTACCCGGCAACCCCAACGCAAATCTCCAACTCTACAATGACTCCCCTCGTCTAGATACCTCCTCGACCCGGCCCCACTTCCCGCCATGGTGGTACGGACACCGCCGTCGCATTCACCGAGCCGCGGAACTTCCCCTCTCGCTCGGCCACCATTGTGCCGCGCCATGGCGCGGGCCGCCCCCTCGCTCTCTGCCGCGGCCTCGACGGCTGCCTCCTCCTCGACGACTCCTGCCAAGAAGAAGGTTCTCTTGCCCATCGCCATGGGCACGGAGGAGATGGAGGCAGTCATCCTTGCCGGTGTACTCCGCCGAGCCGGCGCCGACGTGACGCTGGCATCCGTGGAGGACGGCCTCGATGTGGAGGCCTCGCGTGGCTCCCACATCGTTGat ]
consensusID : consensus_7803#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 602 fasta sequence
[TCACCCATCCTTTATAGAAGATCTCCCAACATTCCGAACTGTTGAATCAAATGTTCAGGTGTCTGGAGAGCTAACAACAAGCCGTGGACCAGGGACAGCATTTCAGTTTGCTTTATCATTTGTAGAGCAGTTGTTTGGGCCTTGTAAAGCTGAAGATATGGACAACACTTTGTTGACAAAGGTTGACGATAATCTTGAAGGAAGTATTGAAGTCAACGAAATTGAGTGGACTTCTGATCACAATCCTCATGTTCTCATTCCAATTGCAAATGGTTCAGAAGAGATGGAGATAATAATGTTGACGGATGTTTTACGGCGAGCAAATGTAAATGTGGTGTTGGCATCAGTTGAAAAATCAACAAGTATTGTCGGGTCCCAAAGGATGAGGATTGTTGCTGATAAATGCATTTCAGATGCTTCTGCCTTAGAATATGATCTAATTATCCTTCCTGTGAGCTATTTCTCATTTCATATTTTCATTTAGATATCATAAATGCCGACATATAAGCTCATTGTTGTTCCCACAAGATATTTTGCATATAGCTGGTTCATGGACTGGTACAAATCCCCATCTTATCATCATCATGATGCTTGCTTTTAAA]
[+] EMBL CA767127 [TCACCCATCCTTTATAGAAGATCTCCCAACATTCCGAACTGTTGAATCAAATGTTCAGGTGTCTGGAGAGCTAACAACAAGCCGTGGACCAGGGACAGCATTTCAGTTTGCTTTATCATTTGTAGAGCAGTTGTTTGGGCCTTGTAAAGCTGAAGATATGGACAACACTTTGTTGACAAAGGTTGACGATAATCTTGAAGGAAGTATTGAAGTCAACGAAATTGAGTGGACTTCTGATCACAATCCTCATGTTCTCATTCCAATTGCAAATGGTTCAGAAGAGATGGAGATAATAATGTTGACGGATGTTTTACGGCGAGCAAATGTAAATGTGGTGTTGGCATCAGTTGAAAAATCAACAAGTATTGTCGGGTCCCAAAGGATGAGGATTGTTGCTGATAAATGCATTTCAGATGCTTCTGCCTTAGAATATGATCTAATTATCCTTCCTGTGAGCTATTTCTCATTTCATATTTTCATTTAGATATCATAAATGCCGACATATAAGCTCATTGTTGTTCCCACAAGATATTTTGCATATAGCTGGTTCATGGACTGGTACAAATCCCCATCTTATCATCATCATGATGCTTGCTTTTAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7803#0 -----------TCGAGCACTCCGTTCTCCCGGGTCTCCGGTGCTGCTCCCGCCGCAGCCG 49
consensus_7803#1 TTGTTCCAGGCTCGAGCACTCCGTTCTCCCGGGTCTCCGGTGCTGCTCCCGCCGCAGCCG 60
consensus_7803#2 ------------------------------------------------------------
consensus_7803#0 GACACCCGAACGCGAAGCTCCAACTCTCCAATGCTCCCCTCGTCTCGTTACCTCCTCGCC 109
consensus_7803#1 GACACCCGAACGCGAAGCTCCAACTCTCCAATGCTCCCCTCGTCTCGTTACCTCCTCGCC 120
consensus_7803#2 ------------------------------------------------------------
consensus_7803#0 CCGGCCCCACTTCCCGCCATGGTGGTACGGCCACCGCCGCCGCATCCACCGAGCCGCGGA 169
consensus_7803#1 CCGGCCCCACTTCCCGCCATGGTGGTACGGCCACCGCCGCCGCATCCACCGAGCCGCGGA 180
consensus_7803#2 ------------------------------------------------------------
consensus_7803#0 ACTTCCCCTCTCGCTCGGCCACCATTGTGCCGCGCCATGGCGCGGGCCGCCCCCTCGCTC 229
consensus_7803#1 ACTTCCCCTCTCGCTCGGCCACCATTGTGCCGCGCCATGGCGCGGGCCGCCCCCTCGCTC 240
consensus_7803#2 ------------------------------------------------------------
consensus_7803#0 TCTGCCGCGGCCTCGACGGCTGCCTCCTCCTCGACGACTCCTGCCAAGAAGAAGGTTCTC 289
consensus_7803#1 TCTGCCGCGGCCTCGACGGCTGCCTCCTCCTCGACGACTCCTGCCAAGAAGAAGGTTCTC 300
consensus_7803#2 ------------------------------------------------------------
consensus_7803#0 TTGCCCATCGCCATGGGCACGGAGGAGATGGAGGCAGTCATCCTTGCCGGTGTACTCCGC 349
consensus_7803#1 TTGCCCATCGCCATGGGCACGGAGGAGATGGAGGCAGTCATCCTTGCCGGTGTACTCCGC 360
consensus_7803#2 ------------------------------------------------------------
consensus_7803#0 CGAGCCGGCGCCGACGTGACGCTGGCATCCGTGGAGGACGGCCTCGAGGTGGAGGCCTCG 409
consensus_7803#1 CGAGCCGGCGCCGACGTGACGCTGGCATCCGTGGAGGACGGCCTCGAGGTGGAGGCCTCG 420
consensus_7803#2 ------------------------------------------------------------
consensus_7803#0 CGTGGCTCCCACATCGTTGCTGACAAGCGCATTGCCGCTTGTGCAGACCAGGTGTTCGAC 469
consensus_7803#1 CGTGGCTCCCACATCGTTGCTGACAAGCGCATTGCCGCTTGTGCAGACCAGGTGTTCGAC 480
consensus_7803#2 ------------------------------------------------------------
consensus_7803#0 CTCGTGGCTCTCCCGGGTGGAATGCCTGGTTCAGTGCGGTTGAGAGACAGTGTGATCCTT 529
consensus_7803#1 CTCGTGGCTCTCCCG--------------------------------------------- 495
consensus_7803#2 ------------------------------------------------------------
consensus_7803#0 CAGAGGATCACAGTTAGACAGGCTGAGGAAAAAAGATTGTATGGTGCTATATGTGCTGCA 589
consensus_7803#1 ------------------------------------------------------------
consensus_7803#2 ------------------------------------------------------------
consensus_7803#0 CCAGCTGTTGTTCTCATGCCGTGGGGCCTCCACAAGAGAAAAAAGATCACTTGTCACCCA 649
consensus_7803#1 ------------------------------------------------------------
consensus_7803#2 -----------------------------------------------------TCACCCA 7
consensus_7803#0 TCCTTTATAGAAGATCTCCCAACATTCCGAACTGTTGAATCAAATGTTCAGGTGTCTGGA 709
consensus_7803#1 ------------------------------------------------------------
consensus_7803#2 TCCTTTATAGAAGATCTCCCAACATTCCGAACTGTTGAATCAAATGTTCAGGTGTCTGGA 67
consensus_7803#0 GAGCTAACAACAAGCCGTGGACCAGGGACAGCATTTCAGTTTGCTTTATCATTTGTAGAG 769
consensus_7803#1 ------------------------------------------------------------
consensus_7803#2 GAGCTAACAACAAGCCGTGGACCAGGGACAGCATTTCAGTTTGCTTTATCATTTGTAGAG 127
consensus_7803#0 CAGTTGTTTGGGCCTTGTAAAGCTGAAGATATGGACAACACTTTGTTGACAAAGGTTGAC 829
consensus_7803#1 ---------------------------------------------TTGACAAAGGTTGAC 510
consensus_7803#2 CAGTTGTTTGGGCCTTGTAAAGCTGAAGATATGGACAACACTTTGTTGACAAAGGTTGAC 187
***************
consensus_7803#0 GATAATCTTGAAAGAAGTATTGAAGTCAACGAAATTGAGTGGTCTTCTGATCACAATCCT 889
consensus_7803#1 GATAATCTTGAAAGAAGTATTGAAGTCAACGAAATTGAGTGGTCTTCTGATCACAATCCT 570
consensus_7803#2 GATAATCTTGAAGGAAGTATTGAAGTCAACGAAATTGAGTGGACTTCTGATCACAATCCT 247
************ ***************************** *****************
consensus_7803#0 CATGTTCTCATTCCAATTGCAAATGGTTCAGGAGAGATGGAGATAATAATGTTGACGGAT 949
consensus_7803#1 CATGTTCTCATTCCAATTGCAAATGGTTCAGAAGAGATGGAGATAATAATGTTGACGGAT 630
consensus_7803#2 CATGTTCTCATTCCAATTGCAAATGGTTCAGAAGAGATGGAGATAATAATGTTGACGGAT 307
******************************* ****************************
consensus_7803#0 GTTTTACGGCGAGCAAATGTAAATGTGGTGTTGGCATCAGTTGAAAAATCAACAAGTATT 1009
consensus_7803#1 GTTTTACGGCGAGCAAATGTAAATGTGGTGTTGGCATCAGTTGAAAAATCAACAAGTATT 690
consensus_7803#2 GTTTTACGGCGAGCAAATGTAAATGTGGTGTTGGCATCAGTTGAAAAATCAACAAGTATT 367
************************************************************
consensus_7803#0 GTCGGGTCCCAAAGGATGAGGATTGTTGCTGATAAATGCATTTCAGATGCTTCTGCCTTA 1069
consensus_7803#1 GTCGGGTCCCAAAGGATGAGGATTGTTGCTGATAAATGCATTTCAGATGCTTCTGCCTTA 750
consensus_7803#2 GTCGGGTCCCAAAGGATGAGGATTGTTGCTGATAAATGCATTTCAGATGCTTCTGCCTTA 427
************************************************************
consensus_7803#0 GAATATGATCTAATTATCCTTCCTGGAGGACCTGCCGGAGCTGAGA----------GACT 1119
consensus_7803#1 GAATATGATCTAATTATCCTTCCTGTGAGCTATTTCTCATTTCATATTTTCATTTAGATA 810
consensus_7803#2 GAATATGATCTAATTATCCTTCCTGTGAGCTATTTCTCATTTCATATTTTCATTTAGATA 487
************************* * * * * * * * **
consensus_7803#0 GCACAAGTCCAGTGTTCTTAAGAAATTACTCAAGGAACAAAA------GCAAACAGGCAG 1173
consensus_7803#1 TCATAAATGCCGACATATAAGTTCATTGTTGTTCCTACAAGATATTTTGCATATAGCTGG 870
consensus_7803#2 TCATAAATGCCGACATATAAGCTCATTGTTGTTCCCACAAGATATTTTGCATATAGCTGG 547
** ** * * * * * * *** * **** * *** * ** *
consensus_7803#0 GATGTATGGTGGGATCTGTTCTTCTCCTGTGATCTTGCAGAAGCAGGGTT---------- 1223
consensus_7803#1 TTCATGGACTGGTACAAATCCCCATCTTATCATCATCATGATGCTTGCTTTTAACCTTAT 930
consensus_7803#2 TTCATGGACTGGTACAAATCCCCATCTTATCATCATCATGATGCTTGCTTTTAAA----- 602
* *** * * * ** * * *** * ** ** * **
consensus_7803#0 --------------
consensus_7803#1 CTTGAATGTAGCTG 944
consensus_7803#2 --------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||