These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7810#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 791 fasta sequence [ACTATGTCTGTGTCACTACAACATCAGGTATTGGTTATAATTCAGCTAGAGGAAAGTAGAGTACTTTGAAGTGTTTGAATGGTTTTCACATGTATACTCTGCTAGCTACCCTTTAGTAAGTATATTCATGTAAAGGGGAGTAATAGATCATTGCACTAATGTTCAAACTCTATTGAGATTGTCCCAGGTGTCACTTTGTTCACTGAAAAAAAAAGAGAACATTTATAGGTTTTTTTTGCTGCTTGGGAGAGGATGCTGCCGAATTGAATTAAGACAGCCTTCAGAATCTGGTATATCTAATGGTCTGTAAAATTTTACACAAGCAACAGGAGGGACCATCAAGGGAATGTTTCACATGTGATGGATTTTGTATAGAAAAAGGAGATTCATTGTTTGCTGAAGGTGTATTGAAAGTTGCTTGCCGATAAATAAAGACCCCATGGATAGATGCAATGATGCATTAAGCTCTTGAAGGAGGATTAACGGAAAACTATGTCGAGTTTTTAGTAGCCTTGTTTGGGCTAACGACACTCGGTTTATTGTTCTAGATCTCTGACCTAAGAATCCTGTTTTAGTTTTTTTTTAGATCTCTTGCTTTGGGTGTTGTTTGCTCTAGGTGTTCTGTTGTCCGCAGTTTCAGGTGCTTTGTAGTGTAGTTTAGTTTGGGGGTGTTCTCAAGGTGTTGTACAGTGAATTGGTTTCGGTGCTTGCCCTTTGTTGCGTTGGTGTTGTTTATGTTCTCTATATCGATGAAAGATGTTAAAGCTTTTGCCTTTGTTTCGAAAAAGATT] [+] EMBL AK070033 [ACTATGTCTGTGTCACTACAACATCAGGTATTGGTTATAATTCAGCTAGAGGAAAGTAGAGTACTTTGAAGTGTTTGAATGGTTTTCACATGTATACTCTGCTAGCTACCCTTTAGTAAGTATATTCATGTAAAGGGGAGTAATAGATCATTGCACTAATGTTCAAACTCTATTGAGATTGTCCCAGGTGTCACTTTGTTCACTGAAAAAAAAAGAGAACATTTATAGGTTTTTTTTGCTGCTTGGGAGAGGATGCTGCCGAATTGAATTAAGACAGCCTTCAGAATCTGGTATATCTAATGGTCTGTAAAATTTTACACAAGCAACAGGAGGGACCATCAAGGGAATGTTTCACATGTGATGGATTTTGTATAGAAAAAGGAGATTCATTGTTTGCTGAAGGTGTATTGAAAGTTGCTTGCCGATAAATAAAGACCCCATGGATAGATGCAATGATGCATTAAGCTCTTGAAGGAGGATTAACGGAAAACTATGTCGAGTTTTTAGTAGCCTTGTTTGGGCTAACGACACTCGGTTTATTGTTCTAGATCTCTGACCTAAGAATCCTGTTTTAGTTTTTTTTTAGATCTCTTGCTTTGGGTGTTGTTTGCTCTAGGTGTTCTGTTGTCCGCAGTTTCAGGTGCTTTGTAGTGTAGTTTAGTTTGGGGGTGTTCTCAAGGTGTTGTACAGTGAATTGGTTTCGGTGCTTGCCCTTTGTTGCGTTGGTGTTGTTTATGTTCTCTATATCGATGAAAGATGTTAAAGCTTTTGCCTTTGTTTCGAAAAAGATT] consensusID : consensus_7810#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 623 fasta sequence [CGCCCGGGCAGGTAATTAGAGACGCATGGATCTGTCGTCAATCAAATCTGGTTTTTTTCGCTGCTCGAGAGAGGATGCTGCTGAGTTGAATCAAGACATCCTTCAGAATCTGGTATATCTAATGGTCTGTAAAATTTTACAAAAGCAACAGGAGGGACCATCAAGGGAATGTTTCAAATGTGATGGATTGTGTATAGAAAAAAGAGATTCGTTGTTTGCTGAAGGTGTATTGGAAGTTGCTTGCTGATAAATAAAGACCCCATGGATAGATGCAATGATGCATTAAGCTCTTGAAGGAGGATTTTGATGGAAAACTATGTCGAGTTTTCAGTAGCCTTGTTTGGGCTAACGACACTCGGTTTATTGTTCTAGGTCTTTGACCTAGAATCATGT-TTTAGTTTTTTTTCTAGGTCTCTTGCTTTTTGTGTTATTTGCTCTAGGTGTTCTGTTGTCCGCTGTTTCAGGTGTTTTGTAGTGTAGTTCAGTTTGGGAGTGTTCTCAAGGTGTTATACAGTGAATTGGTGTTTCGGTGTTCGCCCTTTGTTGGGTTGGTGTTGTTTATCTTCTCTATCGATGAAAGAGGACAAAGCTTTTGCCCTAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL BI118840 [CGCCCGGGCAGGTAATTAGAGACGCATGGATCTGTCGTCAATCAAATCTGGTTTTTTTCGCTGCTCGAGAGAGGATGCTGCTGAGTTGAATCAAGACATCCTTCAGAATCTGGTATATCTAATGGTCTGTAAAATTTTACAAAAGCAACAGRAGGGACCATCAAGGGAATGTTTCAAATGTGATGGATTGTGTATAGAAAAAAGAGATTCGTTGTTTGCTGAAGGTGTATTGGAAGTTGCTTGCTGATAAATAAAGACCCCATGGATAGATGCAATGATGCATTAAGCTCTTGAAGGAGGATTTTGATGGAAAACTATGTCGAGTTTTCAGTAGCCTTGTTTGGGCTAACGACACTCGGTTTATTGTTCTAGGTCTTTGACCTAGAATCATGT TTTAGTTTTTTTTCTAGGTCTCTTGCTTTTTGTGTTATTTGCTCTAGGTGTTCTGTTGTCCGCTGTTTCAGGTGTTTTGTAGTGTAGTTCAGTTTGGGAGTGTTCTCAAGGTGTTATACAGTGAATTGGTGTTTCGGTGTTCGCCCTTTGTTGGGTTGGTGTTGTTTATCTTCTCTATCGATRAAAGAGGACAAAGTTTTTGCCCTAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL BI118838 [ ACGCATGGATCTGTCGTCAATCAAATCTGGTTTTTTTCGCTGCTCGAGAGAGGATGCTGCTGAGTTGAATCAAGACATCCTTCAGAATCTGGTATATCTAATGGTCTGTAAAATTTTACAAAAGCAACAGGAGGGACCATCAAGGGAATGTTTCAAATGTGATGGATTGTGTATAGAAAAAAGAGATTCGTTGTTTGCTGAAGGTGTATTGGAAGTTGCTTGCTGATAAATAAAGACCCCATGGATAGATGCAATGATGCATTAAGCTCTTGAAGRAGGATTTTGATGGAAAACTATGTCGAGTTTTCAGTAGCCTTGTTTGGGCTAACGACACTCGGTTTATTGTTCTAGGTCTTTGACCTAGAATCATGT TTTAGTTTTTTTTCTAGGTCTCTTGCTTTTTGTGTTATTTGCTCTAGGTGTTCTGTTGTCCGCTGTTTCAGGTGTTTTGTAGTGTAGTTCAGTTTGGGAGTGTTCTCAAGGTGTTATACAGTGAATTGGTGTTTCGGTGTTCGCCCTTTGTTGGGTTGGTGTTGTTTATCTTCTCTATCGATGAAAGAGGACAAAGCTTTTGCCCTAAAAAAAAAAAAAAAAAAAAAAA ] [+] EMBL BI118846 [ ACGCATGGATCTGTCGTCAATCAAATCTGGTTTTTTTCGCTGCTCGAGAGAGGATGCTGCTGAGTTGAATCAAGACATCCTTCAGAATCTGGTATATCTAATGGTCTGTAAAATTTTACAAAAGCAACAGGAGGGACCATCAAGGGAATGTTTCAAATGTGATGGATTGTGTATAGAAAAAAGAGATTCGTTGTTTGCTGAAGGTGTATTGGAAGTTGCTTGCTGATAAATAAAGACCCCATGGATAGATGCAATGATGCATTAAGCTCTTGAAGGAGGATTTTGATGGAAAACTATGTCGAGTTTTCAGTAGCCTTGTTTGGGCTAACGACACTCGGCTTATTGTT TAGGTCTTTGACCTAGAATCATGTGTTTAGTTTTTTTTCTAGGTCTCTTGCTTTTTGTGTTATTTGCTCTAGGTGTTCTGTTGTCCGCTGTTTCAGGTGTTTTGTAGTGTAGTTCAGTTTGGGAGTGTTCTCAAGGTGTTATACAGTGAATTGGTGTTTCGGTGTTCGCCCTTTGTTGGGTTGGTGTTGTTTATCTTCTCTATCGATGAAAGAGGACAAAGCTTTTGCCCTAAAAAAAAAAAAAAAAAAAAA ] consensusID : consensus_7810#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 416 fasta sequence [ATGCCAATTGATTAGGTAGATTTTAAGAATTAAGGATTTAAAAAATAATGCTTTAAGATGATAGAAAGAGAACATATGCTAGGTAACCCAGCATTGATATAAACTGACAACATGCTGCTGCTGAGAATATGTGTAACAATGCCAAAATCTCACATCATATTATGTGTAACAGGGAATGTTTCACATGTGATGGATTTTGTATAGAAAAAGGAGATTCATTGTTTGCTGAAGGTGTATTGAAAGTTGCTTGCCGATAAATAAAGACCCCATGGATAGATGCAATGATGCATTAAGCTCTTGAAGGAGGGATTACCGGAAAACTATGTCGAGTTTTTAGGTAGCCTTGTTTGGGCTAACGACACTCGGTTTATTGGTCCTAGTNCTCTGACCTAAGGAATCCTGTTTAAGTTTTTTTT] [+] EMBL C28932 [ATGCCAATTGATTAGGTAGATTTTAAGAATTAAGGATTTAAAAAATAATGCTTTAAGATGATAGAAAGAGAACATATGCTAGGTAACCCAGCATTGATATAAACTGACAACATGCTGCTGCTGAGAATATGTGTAACAATGCCAAAATCTCACATCATATTATGTGTAACAGGGAATGTTTCACATGTGATGGATTTTGTATAGAAAAAGGAGATTCATTGTTTGCTGAAGGTGTATTGAAAGTTGCTTGCCGATAAATAAAGACCCCATGGATAGATGCAATGATGCATTAAGCTCTTGAAGGAGGGATTACCGGAAAACTATGTCGAGTTTTTAGGTAGCCTTGTTTGGGCTAACGACACTCGGTTTATTGGTCCTAGTNCTCTGACCTAAGGAATCCTGTTTAAGTTTTTTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7810#0 ACTATGTCTGTGTCACTACAACATCAGGTATTGGTTATAATTCAGCTAGAGGAAAGTAGA 60 consensus_7810#1 ------------------------------------------------------------ consensus_7810#2 ------------------------------------------------------------ consensus_7810#0 GTACTTTGAAGTGTTTGAATGGTTTTCACATGTATACTCTGCTAGCTACCCTTTAGTAAG 120 consensus_7810#1 ------------------------------------------------------------ consensus_7810#2 ------------------------------------------------------------ consensus_7810#0 TATATTCATGTAAAGGGGAGTAATAGATCATTGCACTAATGTTCAAACTCTATTGAGATT 180 consensus_7810#1 -------------------------------------------------CGCCCGGGCAG 11 consensus_7810#2 ---------------------------------------------ATGCCAATTGATTAG 15 * * consensus_7810#0 GTCCCAGGTGTCACTTTGTTCACTGAAAAAAAAAGAGAACATTTATAGGTTTTTTTTGCT 240 consensus_7810#1 GTAATTAGAGACGCATGGATCTGTCGTCAATCAA------ATCT---GGTTTTTTTCGCT 62 consensus_7810#2 GTAGATTTTAAGAATTAAGGATTTAAAAAATAATGCTTTAAGATGATAGAAAGAGAACAT 75 ** * * ** * * * * * consensus_7810#0 GCTTGGGAGAGGATGCTGCCGAATTGAATTAA-GACAGCCTTCAGAATCTGGTATATCTA 299 consensus_7810#1 GCTCGAGAGAGGATGCTGCTGAGTTGAATCAA-GACATCCTTCAGAATCTGGTATATCTA 121 consensus_7810#2 ATGCTAGGTAACCCAGCATTGATATAAACTGACAACATGCTGCTGCTGAGAATATGTGTA 135 * * ** * ** * *** ** * * *** * ** consensus_7810#0 ATGGTCTGTAAAATTTTACACAAGCAACAGGAGGGACCATCAAGGGAATGTTTCACATGT 359 consensus_7810#1 ATGGTCTGTAAAATTTTACAAAAGCAACAGGAGGGACCATCAAGGGAATGTTTCAAATGT 181 consensus_7810#2 ACAATGC-CAAAATCTCACATCA-TATTATGTGTAAC-----AGGGAATGTTTCACATGT 188 * * ***** * *** * * * * * ** ************* **** consensus_7810#0 GATGGATTTTGTATAGAAAAAGGAGATTCATTGTTTGCTGAAGGTGTATTGAAAGTTGCT 419 consensus_7810#1 GATGGATTGTGTATAGAAAAAAGAGATTCGTTGTTTGCTGAAGGTGTATTGGAAGTTGCT 241 consensus_7810#2 GATGGATTTTGTATAGAAAAAGGAGATTCATTGTTTGCTGAAGGTGTATTGAAAGTTGCT 248 ******** ************ ******* ********************* ******** consensus_7810#0 TGCCGATAAATAAAGACCCCATGGATAGATGCAATGATGCATTAAGCTCTTGAAGGAGGA 479 consensus_7810#1 TGCTGATAAATAAAGACCCCATGGATAGATGCAATGATGCATTAAGCTCTTGAAGGAGGA 301 consensus_7810#2 TGCCGATAAATAAAGACCCCATGGATAGATGCAATGATGCATTAAGCTCTTGAAGGAGGG 308 *** ******************************************************* consensus_7810#0 TT--AACGGAAAACTATGTCGAGTTTTTAG-TAGCCTTGTTTGGGCTAACGACACTCGGT 536 consensus_7810#1 TTTTGATGGAAAACTATGTCGAGTTTTCAG-TAGCCTTGTTTGGGCTAACGACACTCGGT 360 consensus_7810#2 ATT-ACCGGAAAACTATGTCGAGTTTTTAGGTAGCCTTGTTTGGGCTAACGACACTCGGT 367 * ******************** ** ***************************** consensus_7810#0 TTATTG-TTCTAGATCTCTGACCTAA-GAATCCTGTTTTAGTTTTTTTT-TAGATCTCTT 593 consensus_7810#1 TTATTG-TTCTAGGTCTTTGACCTA--GAATCATGTTTTAGTTTTTTTTCTAGGTCTCTT 417 consensus_7810#2 TTATTGGTCCTAGTNCTCTGACCTAAGGAATCCTGTTTAAGTTTTTTTT----------- 416 ****** * **** ** ******* ***** ***** ********** consensus_7810#0 GCTTTGGGTGTTGTTTGCTCTAGGTGTTCTGTTGTCCGCAGTTTCAGGTGCTTTGTAGTG 653 consensus_7810#1 GCTTTTTGTGTTATTTGCTCTAGGTGTTCTGTTGTCCGCTGTTTCAGGTGTTTTGTAGTG 477 consensus_7810#2 ------------------------------------------------------------ consensus_7810#0 TAGTTTAGTTTGGGGGTGTTCTCAAGGTGTTGTACAGTGAATTGGT--TTCGGTGCTTGC 711 consensus_7810#1 TAGTTCAGTTTGGGAGTGTTCTCAAGGTGTTATACAGTGAATTGGTGTTTCGGTGTTCGC 537 consensus_7810#2 ------------------------------------------------------------ consensus_7810#0 CCTTTGTTGCGTTGGTGTTGTTTATGTTCTCTATATCGATGAAAGATGTTAAAGCTTTTG 771 consensus_7810#1 CCTTTGTTGGGTTGGTGTTGTTTATCTTCTCTAT--CGATGAAAGAGGACAAAGCTTTTG 595 consensus_7810#2 ------------------------------------------------------------ consensus_7810#0 CCTTTGTTTCGAAAAAGATT-------- 791 consensus_7810#1 CCCTAAAAAAAAAAAAAAAAAAAAAAAA 623 consensus_7810#2 ---------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||