These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7812#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 733 fasta sequence [CAGAGACGAGACAAGGGGATATATCTTCAGTTAGAATTTCATTTGCATATCTTCAGTTAGGGGACTATTATAGGACCTGAAAACAGGTAAGCAATTTGGCACTACACTTAATTAGTTAAGATTTTTCCAGCTGCTAATATATATCCTGTGTATAGATATGAATTACGAATTGCTAGCTATTCATTTGCATGTTTGCAGATGAACTGCACACTATTTGTCAATTCATGTGTGTGCATGGAAATTGTATCTTAGTTGAATAGAACTTCTCTTGTTTATTTTGCACTCAAGGCGTTCGACGGAATGCCCATGGTATAATTACTGACTGTCTTATAGGTATATAATTAACGGTCTCATCGTTTCTTGGCATTGTCAGAAACGACATGCTGGCCTCTCAAATTCTAGATTAGTTTCTGTTCTCTCAATAAAAATGTTTCAGCTATGTTTAGGCATGAGAAGTTTTATTTCTGACTTGTGCAGTTTTTTTCTCTCTCTGTTCAGCAGAAAAGGAAAGGCATGCAGACAATCCATTGTGGCACAGGCTCACAGCTGATCCTAGATGATCAAAATTGAAGAATATTTGCATGTGGCCAGTAACTCTCTTTTGTATGCTTATCTGAGGCTTAGGCCTGTCAGTATGTAACATTATGTAATTTGAAACTATGTAATCTCAGTACATAATTGATCTGTACTTGTCGNGNTGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CA767084 [CAGAGACGAGACAAGGGGATATATCTTCAGTTAGAATTTCATTTGCATATCTTCAGTTAGGGGACTATTATAGGACCTGAAAACAGGTAAGCAATTTGGCACTACACTTAATTAGTTAAGATTTTTCCAGCTGCTAATATATATCCTGTGTATAGATATGAATTACGAATTGCTAGCTATTCATTTGCATGTTTGCAGATGAACTGCACACTATTTGTCAATTCATGTGTGTGCATGGAAATTGTATCTTAGTTGAATAGAACTTCTCTTGTTTATTTTGCACTCAAGGCGTTCGACGGAATGCCCATGGTATAATTACTGACTGTCTTATAGGTATATAATTAACGGTCTCATCGTTTCTTGGCATTGTCAGAAACGACATGCTGGCCTCTCAAATTCTAGATTAGTTTCTGTTCTCTCAATAAAAATGTTTCAGCTATGTTTAGGCATGAGAAGTTTTATTTCTGACTTGTGCAGTTTTTTTCTCTCTCTGTTCAGCAGAAAAGGAAAGGCATGCAGACAATCCATTGTGGCACAGGCTCACAGCTGATCCTAGATGATCAAAATTGAAGAATATTTGCATGTGGCCAGTAACTCTCTTTTGTATGCTTATCTGAGGCTTAGGCCTGTCAGTATGTAACATTATGTAATTTGAAACTATGTAATCTCAGTACATAATTGATCTGTACTTGTCGNGN ] [-] EMBL CA761028 [ TTTGCATATCTTCAGTTAGGGGACTATTATAGGCCCTGAAAACAGGTAAGCAATTTGGCCCTACACTTAATTAGTTAAGATTTTTCCAGCTGCTAATATATATCCTGTGTATAGATATGAATTACGAATTGCTAGCTATTCATTTGCATGTTTGCAGATGAACTGCACACTATTTGTCAATTCATGTGTGTGCATGGAAATTGTATTTTAGTTGAATAGAACTTCTCTTGTTTATTTTGCACTCAAGGCGTTTGACGGAATGCCCATGGTATAATTACTGACTGTTTTATAGGTATATAATTAACGGTCTCATCGTTTCTTGGCATTGTCAAAAACGACATGCTGGCCTCTCAAATTTTAGATTAGTTTCTGTTCTCTCAATAAAAATGTTTTAGCTATGTTTAGGCATGAAAAGTTTTATTTTTGACTTGTGCAGTTTTTTTCTCTTTCTGTTCAGCAGAAAAGGAAAGGCATGCAGACAATCCATTGTGGCACAGGCTCCCAGCTGATCCTAGATGATCAAAATTGAAGAATATTTGCATGTGGCCAGTAACTCTTTTTTGTATGCTTATTTGAGGCTTAGGCCTGTCAGTATGTAACATTATGTAATTTGAAACTATGTAATCTCAGTACATAATTGATCTGTACTTGTCGTGTTGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_7812#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 599 fasta sequence [CGACAACCGCCTAAGAACAGATGCTGCCGGGCGCCGGCTTCCATCTCCTCCTTTCGCGTTCGAGCGCGGACGCCGATGCCGTTGGCTGCCGTCTCCTCCGCTCCTCCGCATCCTATGGCACCCTCCCCCTCCCCATCCCTAGCGCCTCCACTCCTGCCACCTCGTCGCCAGATCCGGCCGCCCCCGTGGTCAAGGGCGCCAGATGCCGACGAGCTCCGCAGGGAGGACCGGGGGGAGGGTAAAGGGGGTTTGTGGTTGGGCCTCGGTTCGGTGGATGCTGCTCCTCACCAACCATATCCTCAGCGCTACCGGGACTGTNGCGATCCGAATTGTCCGCCCCCCTCGGCCTTTCCTAGGAGGGTTGCGGGGGGCCCCCCATGGAGGCCCCTGGACCCCACCCAGAGTTTTCCTCCCCCCCGGGGGCCATAAGAAACCTCCCCCCGCGGGGGGGGAGNTTTCTCTNTCCCCTCNNCCGTGTTTTGNNCCTCCCCCCTCCCNCGGCNGANGGNGGCNNNNCGGCGGGGGNGGCANCCTCTCGCCGGAGNNNCGGAGATGCGTGNGAAGNNAGCNCAGGGGCNTTGNCGGTGNNNAGAATGATA] [+] EMBL CA753731 [CGACAACCGCCTAAGAACAGATGCTGCCGGGCGCCGGCTTCCATCTCCTCCTTTCGCGTTCGAGCGCGGACGCCGATGCCGTTGGCTGCCGTCTCCTCCGCTCCTCCGCATCCTATGGCACCCTCCCCCTCCCCATCCCTAGCGCCTCCACTCCTGCCACCTCGTCGCCAGATCCGGCCGCCCCCGTGGTCAAGGGCGCCAGATGCCGACGAGCTCCGCAGGGAGGACCGGGGGGAGGGTAAAGGGGGTTTGTGGTTGGGCCTCGGTTCGGTGGATGCTGCTCCTCACCAACCATATCCTCAGCGCTACCGGGACTGTNGCGATCCGAATTGTCCGCCCCCCTCGGCCTTTCCTAGGAGGGTTGCGGGGGGCCCCCCATGGAGGCCCCTGGACCCCACCCAGAGTTTTCCTCCCCCCCGGGGGCCATAAGAAACCTCCCCCCGCGGGGGGGGAGNTTTCTCTNTCCCCTCNNCCGTGTTTTGNNCCTCCCCCCTCCCNCGGCNGANGGNGGCNNNNCGGCGGGGGNGGCANCCTCTCGCCGGAGNNNCGGAGATGCGTGNGAAGNNAGCNCAGGGGCNTTGNCGGTGNNNAGAATGATA] consensusID : consensus_7812#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 555 fasta sequence [ACAAGGGGGAGGGTAAGGGGTTGTGTTGGCCTCGGTTCGGTGATGCTGCTCCTCACCAACCATATCCTTAGCGCTACCGGGACTGTGCGATCCGATTGTCCGCCCCCTCGCCTTCCTAGGATGGTTGCGGTGCCCCCATGAGGCCCTGACCCACCGAGTTTCTTCCTCTGGTCATAGACTCTCCACGGCCGAGTTCATTATTTACGTTTTCCCTTCCTCTTCCTGTTAAGGTCCCTAGCAGAAAAGGAAAGGTATGCAGACAATCCATTGTGGCACAGGCTCACAGCTGATCCTAGATGATCAAAATTGAAGAATATTTGCATGTGGCCAGTAACTCTCTTTTGTATGCTTATTTGAGGCTTAGGCCTGTCAGTATGTAACATTATGTAATTTGAAACTATGTAATCTCAGTACATAATTGATCTGTACTTGTCGTGTTGTTTAGTCTTGGAGTTGGTTGTGTTATTTTGTGTCTGGATGTGATTATGACTTTATGACTGATTGCTTATAAACTACCTGTCGTGAATGTTCCCAAGTAAAAAAAAAAAAAAAAAA] [-] EMBL CA760655 [ACAAGGGGGAGGGTAAGGGGTTGTGTTGGCCTCGGTTCGGTGATGCTGCTCCTCACCAACCATATCCTTAGCGCTACCGGGACTGTGCGATCCGATTGTCCGCCCCCTCGCCTTCCTAGGATGGTTGCGGTGCCCCCATGAGGCCCTGACCCACCGAGTTTCTTCCTCTGGTCATAGACTCTCCACGGCCGAGTTCATTATTTACGTTTTCCCTTCCTCTTCCTGTTAAGGTCCCTAGCAGAAAAGGAAAGGTATGCAGACAATCCATTGTGGCACAGGCTCACAGCTGATCCTAGATGATCAAAATTGAAGAATATTTGCATGTGGCCAGTAACTCTCTTTTGTATGCTTATTTGAGGCTTAGGCCTGTCAGTATGTAACATTATGTAATTTGAAACTATGTAATCTCAGTACATAATTGATCTGTACTTGTCGTGTTGTTTAGTCTTGGAGTTGGTTGTGTTATTTTGTGTCTGGATGTGATTATGACTTTATGACTGATTGCTTATAAACTACCTGTCGTGAATGTTCCCAAGTAAAAAAAAAAAAAAAAAA] consensusID : consensus_7812#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 273 fasta sequence [TAGAACGCCGGCTTCCATCTCCTCCTTTCGCGTTCGAGCGCGGACGCGATGCCGTTGGCTGCCGTCTCCTCCGCTCCTCCGCATCCTATGGCACCCTCCCCCTCCCCATCCCTAGCGCCTCCACTCCTGCCANCTCGTCGNCAGATCCGGCCGACCCCGTGGTCAAGGGCGGCAAATNNCGACGAGCTCCGCAGGAGGACCGGGGGGAGGGTAAGGGGTTGTGNTGGCCTCGGNTCGGTGATGGTGGTCCTCAACAAACATATCCTCAGCGGT] [+] EMBL OSS15441A [TAGAACGCCGGCTTCCATCTCCTCCTTTCGCGTTCGAGCGCGGACGCGATGCCGTTGGCTGCCGTCTCCTCCGCTCCTCCGCATCCTATGGCACCCTCCCCCTCCCCATCCCTAGCGCCTCCACTCCTGCCANCTCGTCGNCAGATCCGGCCGACCCCGTGGTCAAGGGCGGCAAATNNCGACGAGCTCCGCAGGAGGACCGGGGGGAGGGTAAGGGGTTGTGNTGGCCTCGGNTCGGTGATGGTGGTCCTCAACAAACATATCCTCAGCGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7812#1 ------------------------------------------------------------ consensus_7812#3 ------------------------------------------------------------ consensus_7812#2 ------------------------------------------------------------ consensus_7812#0 CAGAGACGAGACAAGGGGATATATCTTCAGTTAGAATTTCATTTGCATATCTTCAGTTAG 60 consensus_7812#1 ------------------------------------------------------------ consensus_7812#3 ------------------------------------------------------------ consensus_7812#2 ------------------------------------------------------------ consensus_7812#0 GGGACTATTATAGGACCTGAAAACAGGTAAGCAATTTGGCACTACACTTAATTAGTTAAG 120 consensus_7812#1 ------------------------------------------------------------ consensus_7812#3 ------------------------------------------------------------ consensus_7812#2 ------------------------------------------------------------ consensus_7812#0 ATTTTTCCAGCTGCTAATATATATCCTGTGTATAGATATGAATTACGAATTGCTAGCTAT 180 consensus_7812#1 --------------------------------------------------CGACAACCGC 10 consensus_7812#3 ------------------------------------------------------------ consensus_7812#2 ----------------------------------------------------ACAAGGGG 8 consensus_7812#0 TCATTTGCATGTTTGCAGATGAACTGCACACTATTTGTCAATTCATGTGTGTGCATGGAA 240 consensus_7812#1 CTAAGAACAGATGCTGCCGGGCGCCGGCTT--CCAT-CTCCTCCTTTCGCGTTCGA---- 63 consensus_7812#3 ----------------TAGAACGCCGGCTT--CCAT-CTCCTCCTTTCGCGTTCGA---- 37 consensus_7812#2 GAGGGTAAGGGGTTGTGTTGGCCTCGGTTCGGTGATGCTGCTCCTCACCAACCATA---- 64 consensus_7812#0 ATTGTATCTTAGTTGAATAGAACTTCTCTTGTTTATTTTGCACTCAAGGCGTTCGACGGA 300 * ** * * * * consensus_7812#1 ---------GCGCGGACGCCGATGCCGTTG----------GCTGCCGTCTCCTCCGCTCC 104 consensus_7812#3 ---------GCGCGGACGC-GATGCCGTTG----------GCTGCCGTCTCCTCCGCTCC 77 consensus_7812#2 ---------TCCTTAGCGCTACCGGGACTGT---------GCGATCCGATTGTCCGCCCC 106 consensus_7812#0 ATGCCCATGGTATAATTACTGACTGTCTTATAGGTATATAATTAACGGTCTCATCGTTTC 360 * * * ** * consensus_7812#1 TCCGCAT-CCTA----TGGCACCCTCCCCCTCCCCAT----CCCTAGCGCCTCCACTCCT 155 consensus_7812#3 TCCGCAT-CCTA----TGGCACCCTCCCCCTCCCCAT----CCCTAGCGCCTCCACTCCT 128 consensus_7812#2 CTCGCCTTCCTA----GGATGGTTGCGGTGCCCCCATGAGGCCCTGACCCACCGAGTTTC 162 consensus_7812#0 TTGGCATTGTCAGAAACGACATGCTGGCCTCTCAAATTCTAGATTAGTTTCTGTTCTCTC 420 ** * * * * ** * * consensus_7812#1 GCCACCTCGTCGCCAGATC----CGGCCGCCCCCGTGGTCAAGGGCG------CCAGATG 205 consensus_7812#3 GCCANCTCGTCGNCAGATC----CGGCCGACCCCGTGGTCAAGGGCG------GCAAATN 178 consensus_7812#2 TTCCTCTGGTCATAGACTCTCCACGGCCGAGTTCATTATTTACGTTTTCCCTTCCTCTTC 222 consensus_7812#0 AATAAAAATGTTTCAGCTATGTTTAGGCATGAGAAGTTTTATTTCTGACTTGTGCAGTTT 480 * * * * * * consensus_7812#1 CCGACGAGCTCCG--CAGGGAGGACCGGGGGGAGGGTAAAGGGGGT-TTGTGGTTGGGCC 262 consensus_7812#3 NCGACGAGCTCCG--CAGG-AGGACCGGGGGGAGGGTAAGGGG----TTGTGNT--GGCC 229 consensus_7812#2 CTGTTAAGGTCCC--TAGCAGAAAAGGAAAGGTATGCAGACAATCCATTGTGGCACAGGC 280 consensus_7812#0 TTTTCTCTCTCTGTTCAGCAGAAAAGGAAAGGCATGCAGACAATCCATTGTGGCACAGGC 540 ** ** * * ** * * ***** * * consensus_7812#1 TCG-GTTCGGTGGATGCTGCTCCTCACCAACCATATCCTCAGCGCTACCGGGACTGTNGC 321 consensus_7812#3 TCG-GNTCGGTG-ATGGTGGTCCTCAACAAACATATCCTCAGCGGT-------------- 273 consensus_7812#2 TCACAGCTGATCCTAGATGATCAAAATTGAAGAATATTTGCATGTGGCCAGTAACTCTCT 340 consensus_7812#0 TCACAGCTGATCCTAGATGATCAAAATTGAAGAATATTTGCATGTGGCCAGTAACTCTCT 600 ** * * * ** ** * * * * * consensus_7812#1 GATCCGAATTGTCCGCCCCCCTCGGCCTTTCCTAGGAGGGTTGCGGGGGGCCCCCCATGG 381 consensus_7812#3 ------------------------------------------------------------ consensus_7812#2 TTTGTATGCTTATTTGAGGCTTAGGCCTGTCAGTATGTAACATTATGTAATTTGAAACTA 400 consensus_7812#0 TTTGTATGCTTATCTGAGGCTTAGGCCTGTCAGTATGTAACATTATGTAATTTGAAACTA 660 consensus_7812#1 AGGCCCCTGGACCCCACCCAGAGTTTTCCTCCCCCCCGGGGGCCATAAGAAACCTCCCCC 441 consensus_7812#3 ------------------------------------------------------------ consensus_7812#2 TGTAATCTCAGTACATAATTGATCTGTACTTGTCGTGTTGTTTAGTCTTGGAGTTGGTTG 460 consensus_7812#0 TGTAATCTCAGTACATAATTGATCTGTACTTGTCGNGNTGTTTAAAAAAAAAAAAAAAAA 720 consensus_7812#1 CGCGGGGGGGGAGNTTTCTCTNTCCCCTCNNCCGTGTTTTGNNCCTCCCCCCTCCCNCGG 501 consensus_7812#3 ------------------------------------------------------------ consensus_7812#2 TGTTATTTTGTGTCTGGATGTGATTATGACTTTATGACTGATTGCTTATAAACTACCTGT 520 consensus_7812#0 AAAAAAAAAAAAA----------------------------------------------- 733 consensus_7812#1 CNGANGGNGGCNNNNCGGCGGGGGNGGCANCCTCTCGCCGGAGNNNCGGAGATGCGTGNG 561 consensus_7812#3 ------------------------------------------------------------ consensus_7812#2 CGTGAATGTTCCCAAGTAAAAAAAAAAAAAAAAAA------------------------- 555 consensus_7812#0 ------------------------------------------------------------ consensus_7812#1 AAGNNAGCNCAGGGGCNTTGNCGGTGNNNAGAATGATA 599 consensus_7812#3 -------------------------------------- consensus_7812#2 -------------------------------------- consensus_7812#0 -------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||