These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7815#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1249 fasta sequence [GCTCTCTCTCTCTCTCTCTCTCTCTCTCAGCCATGGCTCGCCTCCTCTCGCGAACCCTAGCCTTGGCCCGCGCGGACTCCGCCGCGGTGCCCTCCTACGGCCGCCTCCATGTCCGTGGTGTCTCATCGAAGGTGGAGTTCATCGAGATCGACCTGTCGTCGGAGGACGCCCCCTCCTCGTCGTCCTCTTCCGGCGTCGAGGGGGGCGGCTTCGGGCCGCGGGAGATGGGGATGCGGCGACTGGAGGACGCCATCCACGGGGTACTCGTGCGGCGGGCGGCGCCGGAGTGGCTCCCCTTCGTGCCGGGAGGATCCTACTGGGTCCCGGAGATGCGGCGCGGGGTCGCCGCCGACCTCGTGGGCACCGCCGTCCGCAGCGCGATTGGCGCCGCCTGGAACGCGGAGGCGATGACGGAGGAGGAGATGATGTGCCTCACCACCATGCGCGGGTGGCCGTCGGAGGCTTACTTCGTCGAAGGGAAATTTTCTCATCCAGTGGAGAGTTCAAGAAAAGTTGCTACTCAAACTGATGAAGAGGAAAGCTAATTTGTTTGCATCACTTTAGCAGGGACCCCCTGAGAAATAGGAAGCTTGGAGCTGTCGAGTTCTGCTGATGTTGTACATACAGACAGCTATGAACGTGAGCACCAGCGTGTCATCTCATCAGTCGCTTCAGAAGATGATGTGCCCAGTGCTGTTACTACTATCAAAATGCCATGAACATGGATCCGTGTATTCCTGCAACACAGTGCCTTGCGCTATGGTCTTTTTTTCTGAGAGCTTGTACTTGTACCTGTAGAATGTAGTGTATGCATCAAGCTGCTGCTACTGAATAAAAGAAAAAAGAAAAATATATGTTGTGGGTTGGGCTGAATGCCTGTACCCCATGAGCACAGGATGCTCTCGATCATTGAGCGTGCTGTGCACGTCGTGGGCCTCCAACTAAAACTGTAATCATCCTTGGGCAGAAGACGGCAGAAATCTTGAACTTTTTGTTTTGTCTTGTTCTTCGGCTGATAATGCTGCTTCTTCTGATAACAATTGCCCCTGGAAATGCTAATAATGTAAGAAGAGCACTGCTATACGTACTAACTTTCTTTTTAACATAACTCTTTACAAACAATGATATGAGCTGTTTGATTTAACTAGATGGAAGTTATAGACAAGATGTATTCACATCATGACATGTAGTGTTAGTGAGGAAAAAAAAAGTATGTATGGACTTTTTCATGTAAGAAATGGCACATCTA] [+] EMBL AK103790 [GCTCTCTCTCTCTCTCTCTCTCTCTCTCAGCCATGGCTCGCCTCCTCTCGCGAACCCTAGCCTTGGCCCGCGCGGACTCCGCCGCGGTGCCCTCCTACGGCCGCCTCCATGTCCGTGGTGTCTCATCGAAGGTGGAGTTCATCGAGATCGACCTGTCGTCGGAGGACGCCCCCTCCTCGTCGTCCTCTTCCGGCGTCGAGGGGGGCGGCTTCGGGCCGCGGGAGATGGGGATGCGGCGACTGGAGGACGCCATCCACGGGGTACTCGTGCGGCGGGCGGCGCCGGAGTGGCTCCCCTTCGTGCCGGGAGGATCCTACTGGGTCCCGGAGATGCGGCGCGGGGTCGCCGCCGACCTCGTGGGCACCGCCGTCCGCAGCGCGATTGGCGCCGCCTGGAACGCGGAGGCGATGACGGAGGAGGAGATGATGTGCCTCACCACCATGCGCGGGTGGCCGTCGGAGGCTTACTTCGTCGAAGGGAAATTTTCTCATCCAGTGGAGAGTTCAAGAAAAGTTGCTACTCAAACTGATGAAGAGGAAAGCTAATTTGTTTGCATCACTTTAGCAGGGACCCCCTGAGAAATAGGAAGCTTGGAGCTGTCGAGTTCTGCTGATGTTGTACATACAGACAGCTATGAACGTGAGCACCAGCGTGTCATCTCATCAGTCGCTTCAGAAGATGATGTGCCCAGTGCTGTTACTACTATCAAAATGCCATGAACATGGATCCGTGTATTCCTGCAACACAGTGCCTTGCGCTATGGTCTTTTTTTCTGAGAGCTTGTACTTGTACCTGTAGAATGTAGTGTATGCATCAAGCTGCTGCTACTGAATAAAAGAAAAAAGAAAAATATATGTTGTGGGTTGGGCTGAATGCCTGTACCCCATGAGCACAGGATGCTCTCGATCATTGAGCGTGCTGTGCACGTCGTGGGCCTCCAACTAAAACTGTAATCATCCTTGGGCAGAAGACGGCAGAAATCTTGAACTTTTTGTTTTGTCTTGTTCTTCGGCTGATAATGCTGCTTCTTCTGATAACAATTGCCCCTGGAAATGCTAATAATGTAAGAAGAGCAC ] [+] EMBL CA766163 [ CCTCACCACCATGCGCGGGTGGCCGTCGGTGGCTTACTTCGTCGAAGGGAAATTTTCTCATCCAGTGGAGAGTTCAAGAAAAGTTGCTACTCAAACTGATGAAGAGGAAAGCTAATTTGTTTGCATCACTTTAGCAGGGACCCCCTGAGAAATAGGAAGCTTGGAGCTGTCGAGTTCTGCTGATGTTGTACATACAGACAGCTATGAACGTGAGCACCAGCGTGTCATCTCATCAGTCGCTTCAGAAGATGATGTGCCCAGTGCTGTTACTACTATCAAAATGCCATGAACATGGATCCGTGTATTCCTGCAACACAGTGCCTTGCGCTATGGTCTTTTTTTCTGAGAGCTTGTACTTGTACCTGTAGAATGTAGTGTATGCATCAAGCTGCTGCTACTGAATAAAAG AAAAAGAAAAATATATGTTGTGGGTTGGGCTGAATGCCTGTACCCCATGAGCACAGGATGCTCTCGATCATTGAGCGTGCTGTGCACGTCGTGGGCCTCCAACTAAAACTGTAATCATCCTTGGGCAGAAGACGGCAGAAATCTTGAACTTTTTGTTTTGTCTTGGTCTTCGGCTGATAATGCTGCTTC ] [-] EMBL CB651913 [ TTCTCATCCAGTGGAGAGTTCAAGAAAAGTTGCTACTCAAACTGATGAAGAGGAAAGCTAATTTGTTTGCATCACTTTAGCAGGGACCCCCTGAGAAATAGGAAGCTTGGAGCTGTCGAGTTCTGCTGATGTTGTACATACAGACAGCTATGAACGTGAGCACCAGCGTGTCATCTCATCAGTCGCTTCAGAAGATGATGTGCCCAGTGCTGTTACTACTATCAAAATGCCATGAACATGGATCCGTGTATTCCTGCAACACAGTGCCTTGCGCTATGGTCTTTTTTTCTGAGAGCTTGTACTTGTACCTGTAGAATGTAGTGTATGCATCAAGCTGCTGCTACTGAATAAAAGAAAAAAGAAAAATATATGTTGTGGGTTGGGCTGAATGCCTGTACCCCATGAGCACAGGATGCTCTCGATCATTGAGCGTGCTGTGCACGTCGTGGGCCTCCAACTAAAACTGTAATCATCCTTGGGCAGAAGACGGCAGAAATCTTGAACTTTTTGTTTTGTCTTGTTCTTCGGCTGATAATGCTGCTTCTTTTGATAACAATTGCCCCTGGAAATGCTAATAATGTAAGAAGAGCACTGCTATACGTACTAACTTTCTTTTTAACATAACTCTTTACAAACAATGATATGAGCTGTTTGATTTAACTAGATGGAAGTTATAGACAAGATGTATTCACATCATGACATGTAGTGTTAGTGAGGAAAAAAAAAGTATGTATGGACTTTTTCATGTAAGAAATGGCACATCTA] [+] EMBL CF327357 [ ATGGTCTTTTTTTCTGAGAGCTTGTACTTGTACCTGTAGAATGTAGTGTATGCATCAAGCTGCTGCTACTGAATAAAAGAAAAAAGAAAAATATATGTTGTGGGTTGGGCTGAATGCCTGTACCCCATGAGCACAGGATGCTCTCGATCATTGATCGTGCTGTGCACGTCGTGGGCCTCCAACTAAAACTGTAATCATCCTTGGGCAGAAGACGGCAGAAATCTTGAACTTTTTGTTTTGTCTTGTTCTTCGGCTGATAATGCTGCTTCTTCTGATAACAATTGCCCCTGGAAATGCTAATAATGTAAGAAGAGCACTGCTATACGTACTAACTTTCTTTTTAAAAAAA ] consensusID : consensus_7815#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 504 fasta sequence [GAAAAGTTGCTACTCAAACTGATGAAGAGGAAAGCTAATTTGTTTGCATCACTTTAGCAGGGACCNCCNTGAGAAATAGGAAGCTTGGAGCTGTCGAGTTCTGCTGATGTTGTACATACAGACAGCTATGAACGTGAGCACCAGCGTGTCATCTCATCAGTCGCTTCAGAAGATGATGTGCCCAGTGCTGTTACTACTATCAAAATGCCATGAACATGGATCCGTGTATTCCTGCAACACAGTGCCTTGCGCTATGGTCTTTTTTTCTGAGAGCTTGTACTTGTACCTGTAGAATGTAGTGTATGCATCAAGCTGCTGCTACTGAATAAAAGAAAAAAGAAAAATATATGTTGTGGGTTGGGCTGAATGCCTGTACCCCATGAGCACAGGATGCTCTCGATCATTGAGCGTGCTGTGCACGTCGTGGGCCTCCAACTAAAACTGTAATCATCCTTGGGCAGAAGACGGCAGAAATCTTGAACTTTTTGTTTAAAAAAAAAAAAA] [-] EMBL CF323643 [GAAAAGTTGCTACTCAAACTGATGAAGAGGAAAGCTAATTTGTTTGCATCACTTTAGCAGGGACCNCCNTGAGAAATAGGAAGCTTGGAGCTGTCGAGTTCTGCTGATGTTGTACATACAGACAGCTATGAACGTGAGCACCAGCGTGTCATCTCATCAGTCGCTTCAGAAGATGATGTGCCCAGTGCTGTTACTACTATCAAAATGCCATGAACATGGATCCGTGTATTCCTGCAACACAGTGCCTTGCGCTATGGTCTTTTTTTCTGAGAGCTTGTACTTGTACCTGTAGAATGTAGTGTATGCATCAAGCTGCTGCTACTGAATAAAAGAAAAAAGAAAAATATATGTTGTGGGTTGGGCTGAATGCCTGTACCCCATGAGCACAGGATGCTCTCGATCATTGAGCGTGCTGTGCACGTCGTGGGCCTCCAACTAAAACTGTAATCATCCTTGGGCAGAAGACGGCAGAAATCTTGAACTTTTTGTTTAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7815#0 GCTCTCTCTCTCTCTCTCTCTCTCTCTCAGCCATGGCTCGCCTCCTCTCGCGAACCCTAG 60 consensus_7815#1 ------------------------------------------------------------ consensus_7815#0 CCTTGGCCCGCGCGGACTCCGCCGCGGTGCCCTCCTACGGCCGCCTCCATGTCCGTGGTG 120 consensus_7815#1 ------------------------------------------------------------ consensus_7815#0 TCTCATCGAAGGTGGAGTTCATCGAGATCGACCTGTCGTCGGAGGACGCCCCCTCCTCGT 180 consensus_7815#1 ------------------------------------------------------------ consensus_7815#0 CGTCCTCTTCCGGCGTCGAGGGGGGCGGCTTCGGGCCGCGGGAGATGGGGATGCGGCGAC 240 consensus_7815#1 ------------------------------------------------------------ consensus_7815#0 TGGAGGACGCCATCCACGGGGTACTCGTGCGGCGGGCGGCGCCGGAGTGGCTCCCCTTCG 300 consensus_7815#1 ------------------------------------------------------------ consensus_7815#0 TGCCGGGAGGATCCTACTGGGTCCCGGAGATGCGGCGCGGGGTCGCCGCCGACCTCGTGG 360 consensus_7815#1 ------------------------------------------------------------ consensus_7815#0 GCACCGCCGTCCGCAGCGCGATTGGCGCCGCCTGGAACGCGGAGGCGATGACGGAGGAGG 420 consensus_7815#1 ------------------------------------------------------------ consensus_7815#0 AGATGATGTGCCTCACCACCATGCGCGGGTGGCCGTCGGAGGCTTACTTCGTCGAAGGGA 480 consensus_7815#1 ------------------------------------------------------------ consensus_7815#0 AATTTTCTCATCCAGTGGAGAGTTCAAGAAAAGTTGCTACTCAAACTGATGAAGAGGAAA 540 consensus_7815#1 ---------------------------GAAAAGTTGCTACTCAAACTGATGAAGAGGAAA 33 ********************************* consensus_7815#0 GCTAATTTGTTTGCATCACTTTAGCAGGGACCCCCT-GAGAAATAGGAAGCTTGGAGCTG 599 consensus_7815#1 GCTAATTTGTTTGCATCACTTTAGCAGGGACCNCCNTGAGAAATAGGAAGCTTGGAGCTG 93 ******************************** ** *********************** consensus_7815#0 TCGAGTTCTGCTGATGTTGTACATACAGACAGCTATGAACGTGAGCACCAGCGTGTCATC 659 consensus_7815#1 TCGAGTTCTGCTGATGTTGTACATACAGACAGCTATGAACGTGAGCACCAGCGTGTCATC 153 ************************************************************ consensus_7815#0 TCATCAGTCGCTTCAGAAGATGATGTGCCCAGTGCTGTTACTACTATCAAAATGCCATGA 719 consensus_7815#1 TCATCAGTCGCTTCAGAAGATGATGTGCCCAGTGCTGTTACTACTATCAAAATGCCATGA 213 ************************************************************ consensus_7815#0 ACATGGATCCGTGTATTCCTGCAACACAGTGCCTTGCGCTATGGTCTTTTTTTCTGAGAG 779 consensus_7815#1 ACATGGATCCGTGTATTCCTGCAACACAGTGCCTTGCGCTATGGTCTTTTTTTCTGAGAG 273 ************************************************************ consensus_7815#0 CTTGTACTTGTACCTGTAGAATGTAGTGTATGCATCAAGCTGCTGCTACTGAATAAAAGA 839 consensus_7815#1 CTTGTACTTGTACCTGTAGAATGTAGTGTATGCATCAAGCTGCTGCTACTGAATAAAAGA 333 ************************************************************ consensus_7815#0 AAAAAGAAAAATATATGTTGTGGGTTGGGCTGAATGCCTGTACCCCATGAGCACAGGATG 899 consensus_7815#1 AAAAAGAAAAATATATGTTGTGGGTTGGGCTGAATGCCTGTACCCCATGAGCACAGGATG 393 ************************************************************ consensus_7815#0 CTCTCGATCATTGAGCGTGCTGTGCACGTCGTGGGCCTCCAACTAAAACTGTAATCATCC 959 consensus_7815#1 CTCTCGATCATTGAGCGTGCTGTGCACGTCGTGGGCCTCCAACTAAAACTGTAATCATCC 453 ************************************************************ consensus_7815#0 TTGGGCAGAAGACGGCAGAAATCTTGAACTTTTTGTTTTGTCTTGTTCTTCGGCTGATAA 1019 consensus_7815#1 TTGGGCAGAAGACGGCAGAAATCTTGAACTTTTTGTTTAAAAAAAAAAAAA--------- 504 ************************************** consensus_7815#0 TGCTGCTTCTTCTGATAACAATTGCCCCTGGAAATGCTAATAATGTAAGAAGAGCACTGC 1079 consensus_7815#1 ------------------------------------------------------------ consensus_7815#0 TATACGTACTAACTTTCTTTTTAACATAACTCTTTACAAACAATGATATGAGCTGTTTGA 1139 consensus_7815#1 ------------------------------------------------------------ consensus_7815#0 TTTAACTAGATGGAAGTTATAGACAAGATGTATTCACATCATGACATGTAGTGTTAGTGA 1199 consensus_7815#1 ------------------------------------------------------------ consensus_7815#0 GGAAAAAAAAAGTATGTATGGACTTTTTCATGTAAGAAATGGCACATCTA 1249 consensus_7815#1 -------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||