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Oryza sativa
cluster # 7819 cluster # 7819       Sequences # 5       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7819#0 length = 1339 sequences # 5  

consensusID : consensus_7819#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1339
fasta sequence
                              [GTCGAGGAGAATTTTGGAGGTTTGGACGAAGACGGAGGAGGAGATCCTCGCCGAGACGACCGCCGCTTCCAGCATCCGTGGCGGAGGTTTCGCCCGAGCTCCCACCACCGCTGGCCCAGCGCCGACTCCGAGTTCATCTCCTACCCGGCTTCAGTCGATTGATAGGCTAGTTAGGTATGCTGAGTGGCCGCGCGGTGACGTTGCATCATAGAAGTGATTCGGGCGAACGTTTGGTAGGAAATGTGGTACCCGATGAAGCAGAGAGCGGCGAGGAGGCCGAAGCTTCCTCCAAGGTGCTGTACCGAGCCTCGTTTCAGGAGCTGATGCCCAACTATCTGCAGTATGACACGATCATATGGGCCGTGATATCAC-TGCTGCTTGTTCTGGCATGGGGGGTTGGCCTGCTCATGCTTCTCTACCTGCCGTACAAAAGATATGTGCTGAAGAAGGATATCTTTTCCCGCAAACTCTATGTTACTGAGAATAAGATAGTGTACAAGGCTAGTAGGCCTTCATATATACCGTTCATGGGCATTGTCAAGAAAGAGATAGAAGTACCTCTTCAATTGGTAGTTGATGTTATAATAGAGCAAGGTTGTCTGCAATCTGTTTATAGCTTATATACATTTAAAGTAGAAAGCATAGCCTCGGGGAAACCTGCTCCATTGGATGAACTACAATTTCATGGTGTTCACAATCCAGATCTTCTAAAGACGGTTATAATCAGAGAAGCTTCCAAGAGAATCCAAGAACACCAAAGTTGGAAGTACAGAATATACTCTGGAGAAGGCCCTTCTGATGTTACACCAATCGATAGACTTGACTCTCCTAATGCGAAGGTGACAGCCTCCTCCAGGCATAATTTCCAGGAATCCAAGGGCAGAATTCCTAAAAGTGACAGTATCTTGCTCCATAAGCTTGAAGAAGTTTGTCAATCAGTTAAGAATCTTGAATCTCTCCTCTTGGGATCACATTCAAGGGCATGATGAGCAGCTGAAATGTATGTTTTCTTTCATCTTCCATCATACAAATGTGTATTGTATGACCTTTGTTACTGTCT-GTAGCA-TTGCATGCAATGTACCAATGCGGGTAATTAGGAAACAATTGTTGATACTTAGGAAAAACTTGTCAGCGCTTGCAAGTTCTCTCATTGGCAATGTACATAGGTCATCCTGATACCTCTAGTTTCGTAAATCCTAGTACAGAAACAAACCTGTGAATCCAAAAGTAGATCAGTCACACGTGTAAGTTGATACTTAAGCATGTTTGCTATCCGAAACATTTTTTTTTCTTTGCCCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK069773             [GTCGAGGAGAATTTTGGAGGTTTGGACGAAGACGGAGGAGGAGATCCTCGCCGAGACGACCGCCGCTTCCAGCATCCGTGGCGGAGGTTTCGCCCGAGCTCCCACCACCGCTGGCCCAGCGCCGACTCCGAGTTCATCTCCTACCCGGCTTCAGTCGATTGATAGGCTAGTTAGGTATGCTGAGTGGCCGCGCGGTGACGTTGCATCATAGAAGTGATTCGGGCGAACGTTTGGTAGGAAATGTGGTACCCGATGAAGCAGAGAGCGGCGAGGAGGCCGAAGCTTCCTCCAAGGTGCTGTACCGAGCCTCGTTTCAGGAGCTGATGCCCAACTATCTGCAGTATGACACGATCATATGGGCCGTGATATCAC TGCTGCTTGTTCTGGCATGGGGGGTTGGCCTGCTCATGCTTCTCTACCTGCCGTACAAAAGATATGTGCTGAAGAAGGATATCTTTTCCCGCAAACTCTATGTTACTGAGAATAAGATAGTGTACAAGGCTAGTAGGCCTTCATATATACCGTTCATGGGCATTGTCAAGAAAGAGATAGAAGTACCTCTTCAATTGGTAGTTGATGTTATAATAGAGCAAGGTTGTCTGCAATCTGTTTATAGCTTATATACATTTAAAGTAGAAAGCATAGCCTCGGGGAAACCTGCTCCATTGGATGAACTACAATTTCATGGTGTTCACAATCCAGATCTTCTAAAGACGGTTATAATCAGAGAAGCTTCCAAGAGAATCCAAGAACACCAAAGTTGGAAGTACAGAATATACTCTGGAGAAGGCCCTTCTGATGTTACACCAATCGATAGACTTGACTCTCCTAATGCGAAGGTGACAGCCTCCTCCAGGCATAATTTCCAGGAATCCAAGGGCAGAATTCCTAAAAGTGACAGTATCTTGCTCCATAAGCTTGAAGAAGTTTGTCAATCAGTTAAGAATCTTGAATCTCTCCTCTTGGGATCACATTCAAGGGCATGATGAGCAGCTGAAATGTATGTTTTCTTTCATCTTCCATCATACAAATGTGTATTGTATGACCTTTGTTACTGTCT GTAGCA TTGCATGCAATGTACCAATGCGGGTAATTAGGAAACAATTGTTGATACTTAGGAAAAACTTGTCAGCGCTTGCAAGTTCTCTCATTGGCAATGTACATAGGTCATCCTGATACCTCTAGTTTCGTAAATCCTAGTACAGAAACAAACCTGTGAATCCAAAAGTAGATCAGTCACACGTGTAAGTTGATACTTAAGCATGTTTGCTATCCGAAACATTTTTTT                                                   ]
[+] EMBL C72477               [              TGGAGGTTTGGACGAAGACGGAGGAGGAGATCCTCGCCGAGACGACCGCCGCTTCCAGCATCCGTGGCGGAGGTTTCGCCCGAGCTCCCACCACCGCTGGCCCAGCGCCGACTCCGAGTTCATCTCCTACCCGGCTTCAGTCGATTGATAGGCTAGTTAGGTATGCTGAGTGGCCGCGCGGTGACGTTGCATCATAGAAGTGATTCGGGCGAACGTTTGGTAGGAAATGTGGTACCCGATGAAGCAGAGAGCGGCGAGGAGGCCGAAGCTTCCTCCAAGGTGCTGTACCGAGCCTCGTTTCAGGAGCTGATGCCCAACTATCTGCAGTATGACACGATCATATGGGCCGTGATATCACTTGCTGCTTGTTCTGGCATGGGGGGTTGGCCTGCTCATGCTTCTCTAACTGCCGTACAAAAGATATGTGCTGAAGAAGGATATCTTTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CA755730             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TGGGCATTGTCAAGAAAGAGATAGAAGTACCTCTTCAATTGGTAGTTGATGTTATAATAGAGCAAGGTTGTCTGCAATCTGTTTATAGCTTATATACATTTAAAGTAGAAAGCATAGCCTCGGGGAAACCTGCTCCATTGGATGAACTACAATTTCATGGTGTTCACAATCCAGATCTTCTAAAGACGGTTATAATCAGAGAAGCTTCCAAGAGAATCCNAGAACACCAAAGTTGGAAGTACAGAATATACTCTGGAGAAGGCCCTTCTGATGTTACACCAATCGATAGACTTGACTCTCCTAATGCGAAGGTGACAGCCTCCTCCCGGCATAATTTCCAGGAATCCAAGGGCAGAATTCCTAAAAGTGACAGTATCTTGCTCCATAAGCTTGAAGAAGTTTGTCAATCAGTTAAGAATCTTGAATCTCTCCTCTTGGGATCACATCCAAGGGCATGATGAGCACCTGAAATGTATGTTTTCTTTCATCTTCCATCAAACAAATGTGTATTGTATGACCTTTGTTACTGCCTGGTA CATTTGCA GCCATGTACCATTGCGGTTAATTAGG AACAATTGGTGATACTTAGGAAAAATTTGg                                                                                                                                                                                                                  ]
[+] EMBL AK058351             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ATAGAGCAAGGTTGTCTGCAATCTGTTTATAGCTTATATACATTTAAAGTAGAAAGCATAGCCTCGGGGAAACCTGCTCCATTGGATGAACTACAATTTCATGGTGTTCACAATCCAGATCTTCTAAAGACGGTTATAATCAGAGAAGCTTCCAAGAGAATCCAAGAACACCAAAGTTGGAAGTACAGAATATACTCTGGAGAAGGCCCTTCTGATGTTACACCAATCGATAGACTTGACTCTCCTAATGCGAAGGTGACAGCCTCCTCCAGGCATAATTTCCAGGAATCCAAGGGCAGAATTCCTAAAAGTGACAGTATCTTGCTCCATAAGCTTGAAGAAGTTTGTCAATCAGTTAAGAATCTTGAATCTCTCCTCTTGGGATCACATTCAAGGGCATGATGAGCAGCTGAAATGTATGTTTTCTTTCATCTTCCATCATACAAATGTGTATTGTATGACCTTTGTTACTGTCT GTAGCA TTGCATGCAATGTACCAATGCGGGTAATTAGGAAACAATTGTTGATACTTAGGAAAAACTTGTCAGCGCTTGCAAGTTCTCTCATTGGCAATGTACATAGGTCATCCTGATACCTCTAGTTTCGTAAATCCTAGTACAGAAACAAACCTGTGAATCCAAAAGTAGATCAGTCACACGTGTAAGTTGATACTTAAGCATGTTTGCTATCCGAAACATTTTTT                                                    ]
[+] EMBL AU057735             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ATTGTATGACCTTTGTTACTGTCT GTAGCA TTGCATGCAATGTACCAATGCGGGTAATTAGGAAACAATTGTTGATACTTAGGAAAAACTTGTCAGCGCTTGCAAGTTCTCTCATTGGCAATGTACATAGGTCATCCTGATACCTCTAGTTTCGTAAATCCTAGTACAGAAACAAACCTGTGAATCCAAAAGTAGATCAGTCACACGTGTAAGTTGATACTTAAGCATGTTTGCTATCCGAAACATTTTTTTTTCTTTGCCCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_7819#0 GTCGAGGAGAATTTTGGAGGTTTGGACGAAGACGGAGGAGGAGATCCTCGCCGAGACGAC CGCCGCTTCCAGCATCCGTGGCGGAGGTTTCGCCCGAGCTCCCACCACCGCTGGCCCAGC GCCGACTCCGAGTTCATCTCCTACCCGGCTTCAGTCGATTGATAGGCTAGTTAGGTATGC TGAGTGGCCGCGCGGTGACGTTGCATCATAGAAGTGATTCGGGCGAACGTTTGGTAGGAA ATGTGGTACCCGATGAAGCAGAGAGCGGCGAGGAGGCCGAAGCTTCCTCCAAGGTGCTGT ACCGAGCCTCGTTTCAGGAGCTGATGCCCAACTATCTGCAGTATGACACGATCATATGGG CCGTGATATCACTGCTGCTTGTTCTGGCATGGGGGGTTGGCCTGCTCATGCTTCTCTACC TGCCGTACAAAAGATATGTGCTGAAGAAGGATATCTTTTCCCGCAAACTCTATGTTACTG AGAATAAGATAGTGTACAAGGCTAGTAGGCCTTCATATATACCGTTCATGGGCATTGTCA AGAAAGAGATAGAAGTACCTCTTCAATTGGTAGTTGATGTTATAATAGAGCAAGGTTGTC TGCAATCTGTTTATAGCTTATATACATTTAAAGTAGAAAGCATAGCCTCGGGGAAACCTG CTCCATTGGATGAACTACAATTTCATGGTGTTCACAATCCAGATCTTCTAAAGACGGTTA TAATCAGAGAAGCTTCCAAGAGAATCCAAGAACACCAAAGTTGGAAGTACAGAATATACT CTGGAGAAGGCCCTTCTGATGTTACACCAATCGATAGACTTGACTCTCCTAATGCGAAGG TGACAGCCTCCTCCAGGCATAATTTCCAGGAATCCAAGGGCAGAATTCCTAAAAGTGACA GTATCTTGCTCCATAAGCTTGAAGAAGTTTGTCAATCAGTTAAGAATCTTGAATCTCTCC TCTTGGGATCACATTCAAGGGCATGATGAGCAGCTGAAATGTATGTTTTCTTTCATCTTC CATCATACAAATGTGTATTGTATGACCTTTGTTACTGTCTGTAGCATTGCATGCAATGTA CCAATGCGGGTAATTAGGAAACAATTGTTGATACTTAGGAAAAACTTGTCAGCGCTTGCA AGTTCTCTCATTGGCAATGTACATAGGTCATCCTGATACCTCTAGTTTCGTAAATCCTAG TACAGAAACAAACCTGTGAATCCAAAAGTAGATCAGTCACACGTGTAAGTTGATACTTAA GCATGTTTGCTATCCGAAACATTTTTTTTTCTTTGCCCACAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)