cluster # 7822

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Oryza sativa
cluster # 7822 cluster # 7822 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7822#0 length = 804 sequences # 3

consensus_7822#1 length = 410 sequences # 1
consensus_7822#2 length = 318 sequences # 1

consensusID : consensus_7822#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 804
fasta sequence

                              [TTTTGTCAACTATCATACATGAATGCATTATTCACAACTTCGCGCTTTCATATACTCTCTGAACTATACAGGGATTGCCTATCATTTGCAAATTTAAATGAACAGCTACTGTGATGGGAGGGCCAAAAAAATAAAGATGAATATAATTAGCTTGTCATTTGACTGCACCTACTGAATTTCTTCCTTTGGTTCTGAACTGATCCCTGTTCTTCCTTCTCACCTCCATTGGATGCCCAAGCAAATATGGCTTGAAAGCGCCAATGAAAACAGCGGAAGGGGGCATACTGAGGCCTGGCTTTGCCTTGTGTGTGTTCTTCTTTGGACTATTCAGGTAAGACTTCATGTGGCCAAATATTAGGCTAGGCATCTTCTTTAGCTCCACAACTGATGATGTGAAGAACTGTTCCGTGGAAACATCAGCCGATGAATCGAGACTAAACCCGATTGACGCATCTAGGTGAGGCGGAGGAAACCTCTCGAGTTTTGTTGTGCTTGTGCTTGTCACCAATCTTGGGATATTTGGTTTAGCTTGAGGCTTATTATTGACATCTGGAGTAAATACTCTGCGCCCAGGATTTTGTGACATGGGCTTTCTTGCTGTGGTCTGACGTTCTACTGAACCATTAGCCCTCAGTTTCCTTTTATGCTTCTCATACTTCAACTTCACATCTATTTCTTTACATGGTGGATACCGGGGAAGGCTTGATGGTTCACAGGCATATGGTTCTGTCCTGAAGAACTCACTGTTGAGAGCATCAGTTGCTGTGCCTCTCATGTCAGGATCAATAGACAGGAGAGTCTCAA]

[+] EMBL CB673149             [TTTTGTCAACTATCATACATGAATGCATTATTCACAACTTCGCGCTTTCATATACTCTCTGAACTATACAGGGATTGCCTATCATTTGCAAATTTAAATGAACAGCTACTGTGATGGGAGGGCCAAAAAAATAAAGATGAATATAATTAGCTTGTCATTTGACTGCACCTACTGAATTTCTTCCTTTGGTTCTGAACTGATCCCTGTTCTTCCTTCTCACCTCCATTGGATGCCCAAGCAAATATGGCTTGAAAGCGCCAATGAAAACAGCGGAAGGGGGCATACTGAGGCCTGGCTTTGCCTTGGGTGGGTTCTTCTTTGGACTATTCAGGAAAAACTTCATGGGGCCAAATATTAGGCTAGGCATCTTCTTTAGCTCCACAACTGATGATGTGAAAAACTGTTCCGGGGAAACATCAGCCGATGAATCGAGACTAAACCCGATTGACCCATCTAGGTGAGGCGGAGGAAACCTCTCGAGTTTTGTTGGGCTTGTGCTTGTCACCAATCTTGGGATATTTGGTTTAGCTTGAGGCTTATTATTGACATCTGGAGTAAATACTCTGCGCCCAGAATTTTGTGACATGGGCTTTCTTGCTGTGGTCTGACGTTCTACTGAACCATTAACCCTCAGTTTCCTTTTATGCTTCTCATACTTCAACTTCACATCTA                                                                                                                                    ]
[+] EMBL CB620720             [                                       TCGC CTTTCATATACTCTCTGAACTATACAGGTATTGCCTATCATTTGCAGATTTAAATGAACAGCTACTGTGATGTGAGGGCCAAAAAAACAAAGATGAATATAATTAGCTTGTCATTTGACTGCACCTACTGAATTTCTTCCTTTGGTTCTGAACTGATCCCTGTTCTTCCTTCTCACCTCCATTGGATGCCCAAGCGAATATGGCTTGAAAGCGCCAATGAGAACAGCGGAAGGTGGCATACTGAGGCCTGGCTTTGCCTTGTGTGTGTTCTTCTTTGGACTATTCAGGTAAGACTTCATGTGGCCAAATATTAGGCTAGGCATCTTCTTTAGCTCCACAACTGATGATGTGAAGAACTGTTCCGTGGAAACATCAGCCGATGAATCGAGACTAAACCCGATTGACGCATCTAGGTGAGGCGGAGGAAACCTCTCGAGTTTTGTTGTGCTTGTGCTTGTCACCAATCTTGGGATATTTGGTTTAGCTTGAGGCTTATTATTGACATCTGGAGTAAATACTCTGCGCCCAGGATTTTGTGACATGGGCTTTCTTGCTGTGGTCTGACGTTCTACTGAACCATTAGCCCTCAGTTTCCTTTTATGCTTCTCATACTTCAACTTCACATCTATTTCTTTACATGGTGGATACCGGGGAAGGCTTGATGGTTCACAGGCATATGGTTCTGTCCTGAAGAACTCACTGTTGAGAGCATCAGTTGCTGTGCCTCTCATGTCAGGA                      ]
[-] EMBL CF323433             [                                                                                                                                                                                                                                                                                             TGAGGCCTGGCTTTGCCTTGTGTGTGTTCTTCTTTGGACTATTCAGGTAAGACTTCATGTGGCCAAATATTAGGCTAGGCATCTTCTTTAGCTCCACAACTGATGATGTGAAGAACTGTTCCGTGGAAACATCAGCCGATGAATCGAGACTAAACCCGATTGACGCATCTAGGTGAGGCGGAGGAAACCTCTCGAGTTTTGTTGTGCTTGTGCTTGTCACCAATCTTGGGATATTTGGTTTAGCTTGAGGCTTATTATTGACATCTGGAGTAAATACTCTGCGCCCAGGATTTTGTGACATGGGCTTTCTTGCTGTGGTCTGACGTTCTACTGAACCATTAGCCCTCAGTTTCCTTTTATGCTTCTCATACTTCAACTTCACATCTATTTCTTTACATGGTGGATACCGGGGAAGGCTTGATGGTTCACAGGCATATGGTTCTGTCCTGAAGAACTCACTGTTGAGAGCATCAGTTGCTGTGCCTCTCATGTCAGGATCAATAGACAGGAGAGTCTCAA]




>consensus_7822#0
TTTTGTCAACTATCATACATGAATGCATTATTCACAACTTCGCGCTTTCATATACTCTCT
GAACTATACAGGGATTGCCTATCATTTGCAAATTTAAATGAACAGCTACTGTGATGGGAG
GGCCAAAAAAATAAAGATGAATATAATTAGCTTGTCATTTGACTGCACCTACTGAATTTC
TTCCTTTGGTTCTGAACTGATCCCTGTTCTTCCTTCTCACCTCCATTGGATGCCCAAGCA
AATATGGCTTGAAAGCGCCAATGAAAACAGCGGAAGGGGGCATACTGAGGCCTGGCTTTG
CCTTGTGTGTGTTCTTCTTTGGACTATTCAGGTAAGACTTCATGTGGCCAAATATTAGGC
TAGGCATCTTCTTTAGCTCCACAACTGATGATGTGAAGAACTGTTCCGTGGAAACATCAG
CCGATGAATCGAGACTAAACCCGATTGACGCATCTAGGTGAGGCGGAGGAAACCTCTCGA
GTTTTGTTGTGCTTGTGCTTGTCACCAATCTTGGGATATTTGGTTTAGCTTGAGGCTTAT
TATTGACATCTGGAGTAAATACTCTGCGCCCAGGATTTTGTGACATGGGCTTTCTTGCTG
TGGTCTGACGTTCTACTGAACCATTAGCCCTCAGTTTCCTTTTATGCTTCTCATACTTCA
ACTTCACATCTATTTCTTTACATGGTGGATACCGGGGAAGGCTTGATGGTTCACAGGCAT
ATGGTTCTGTCCTGAAGAACTCACTGTTGAGAGCATCAGTTGCTGTGCCTCTCATGTCAG
GATCAATAGACAGGAGAGTCTCAA

consensusID : consensus_7822#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 410
fasta sequence

                              [TGACTAGCCAAGTGATCACACTTTGGTATCGTCCACCTGAACTCTTGTTAGGTGCTACTCACTATGGCGTCGGTGTTGATCTCTGGAGTGTGGGTTGCATACTAGCAGAATTGCTTCTCGGCGAGCCTATATTCCCAGGGAGAACAGAGGTGGAGCAATTGCACAAAATCTTCAAGTTATGCGGCTCTCCGTCAGACGATTACTGGGAGAAAATGAAGTTCCCACATGCTTCATTCAGGACATATGAGCGATGCATCGCGGAGAAATTTAAAGATGTGGCACCATCTGCACTATCACTTCTTGAGACTCTCCTGTCTATTGATCCTGACATGAGAGGCACAGCAACTGATGCTCTCAACAGTGAGGTTAATACCGCCCTTCACATTCTAGGCAACACTCTCACAGGCAAC]

[+] EMBL CB673148             [TGACTAGCCAAGTGATCACACTTTGGTATCGTCCACCTGAACTCTTGTTAGGTGCTACTCACTATGGCGTCGGTGTTGATCTCTGGAGTGTGGGTTGCATACTAGCAGAATTGCTTCTCGGCGAGCCTATATTCCCAGGGAGAACAGAGGTGGAGCAATTGCACAAAATCTTCAAGTTATGCGGCTCTCCGTCAGACGATTACTGGGAGAAAATGAAGTTCCCACATGCTTCATTCAGGACATATGAGCGATGCATCGCGGAGAAATTTAAAGATGTGGCACCATCTGCACTATCACTTCTTGAGACTCTCCTGTCTATTGATCCTGACATGAGAGGCACAGCAACTGATGCTCTCAACAGTGAGGTTAATACCGCCCTTCACATTCTAGGCAACACTCTCACAGGCAAC]




>consensus_7822#1
TGACTAGCCAAGTGATCACACTTTGGTATCGTCCACCTGAACTCTTGTTAGGTGCTACTC
ACTATGGCGTCGGTGTTGATCTCTGGAGTGTGGGTTGCATACTAGCAGAATTGCTTCTCG
GCGAGCCTATATTCCCAGGGAGAACAGAGGTGGAGCAATTGCACAAAATCTTCAAGTTAT
GCGGCTCTCCGTCAGACGATTACTGGGAGAAAATGAAGTTCCCACATGCTTCATTCAGGA
CATATGAGCGATGCATCGCGGAGAAATTTAAAGATGTGGCACCATCTGCACTATCACTTC
TTGAGACTCTCCTGTCTATTGATCCTGACATGAGAGGCACAGCAACTGATGCTCTCAACA
GTGAGGTTAATACCGCCCTTCACATTCTAGGCAACACTCTCACAGGCAAC

consensusID : consensus_7822#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 318
fasta sequence

                              [TTTTTTTTTTTTTTGAGCTGAGAATTTTTTTCTGTGTTTCTGATTTCATTCTGGATGATTTGAATGTATTCAGGGTCTACCACGTTCTTGATTTTTTTTTACTGAACTGCCTATGATTTCCAGTGAAATTTTGTGAACTATCATACATGAATGCATTATTCACAACTCGCCTTTCATATACTCTCTGAACTATACAGGTATTGCCTATCATTTGCAGATTTAAATGAACAGCTACTGTGATGTGAGGGCCAAAAAAATAAAGATGAATATAATTAGCTTGTCATTTGACTGCACCTACTGAACCCACGCGTNCCNGTC]

[-] EMBL AU056525             [TTTTTTTTTTTTTTGAGCTGAGAATTTTTTTCTGTGTTTCTGATTTCATTCTGGATGATTTGAATGTATTCAGGGTCTACCACGTTCTTGATTTTTTTTTACTGAACTGCCTATGATTTCCAGTGAAATTTTGTGAACTATCATACATGAATGCATTATTCACAACTCGCCTTTCATATACTCTCTGAACTATACAGGTATTGCCTATCATTTGCAGATTTAAATGAACAGCTACTGTGATGTGAGGGCCAAAAAAATAAAGATGAATATAATTAGCTTGTCATTTGACTGCACCTACTGAACCCACGCGTNCCNGTC]




>consensus_7822#2
TTTTTTTTTTTTTTGAGCTGAGAATTTTTTTCTGTGTTTCTGATTTCATTCTGGATGATT
TGAATGTATTCAGGGTCTACCACGTTCTTGATTTTTTTTTACTGAACTGCCTATGATTTC
CAGTGAAATTTTGTGAACTATCATACATGAATGCATTATTCACAACTCGCCTTTCATATA
CTCTCTGAACTATACAGGTATTGCCTATCATTTGCAGATTTAAATGAACAGCTACTGTGA
TGTGAGGGCCAAAAAAATAAAGATGAATATAATTAGCTTGTCATTTGACTGCACCTACTG
AACCCACGCGTNCCNGTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7822#0      ------------------------------------------------------------
consensus_7822#2      TTTTTTTTTTTTTTGAGCTGAGAATTTTTTTCTGTGTTTCTGATTTCATTCTGGATGATT 60
consensus_7822#1      ------------------------------------------------------------
                                                                                  

consensus_7822#0      ------------------------------------------------------------
consensus_7822#2      TGAATGTATTCAGGGTCTACCACGTTCTTGATTTTTTTTTACTGAACTGCCTATGATTTC 120
consensus_7822#1      ------------------------------------------------------------
                                                                                  

consensus_7822#0      --------TTTTGTCAACT-ATCATACATGAATGCATTATTCACAACTTCGCGCTT-TCA 50
consensus_7822#2      CAGTGAAATTTTGTGAACT-ATCATACATGAATGCATTATTCACAACT-CGC-CTT-TCA 176
consensus_7822#1      ------TGACTAGCCAAGTGATCACACTTTGGT--ATCGTCCAC--CTGAACTCTTGTTA 50
                                * *  ** * **** ** *   *  **  * ***  **   * *** * *

consensus_7822#0      TATACT-CTCTGAACTATACAGGGATTG-CCTATCATTTGCAAATT-TAAATGAACAGCT 107
consensus_7822#2      TATACT-CTCTGAACTATACAGGTATTG-CCTATCATTTGCAGATT-TAAATGAACAGCT 233
consensus_7822#1      GGTGCTACTCACTATGGCGTCGGTGTTGATCTCTGGAGTGTGGGTTGCATACTAGCAGAA 110
                        * ** ***   *       **  ***  ** *    **    **  * *  * ***  

consensus_7822#0      ACTGTGATGGGAGGGCCAAAAAAATAAAGATGAATATAATTAGCTTGTCATTTGACTGCA 167
consensus_7822#2      ACTGTGATGTGAGGGCCAAAAAAATAAAGATGAATATAATTAGCTTGTCATTTGACTGCA 293
consensus_7822#1      TTGCTTCTCGGCGAGCCTATATTCCCAGGGAGAACAGAGGTGGA--GCAATTGCACAAAA 168
                          *  *  * * *** * *     * *  *** * *  * *   *  ***  **   *

consensus_7822#0      CCTACTGAATTTCTTCCTTTGGTTCTGAACTGATCCCTGTTCTTCCTTCTCACCTCCATT 227
consensus_7822#2      CCTACTGAACCCACGCGTNCCNGTC----------------------------------- 318
consensus_7822#1      TCTTCAAGTTATGCGGCTCTCCGTCAGA--CGATTACTGGGAGAAAATGAAGTTCCCACA 226
                       ** *            *     **                                   

consensus_7822#0      GGATGC-CCAAGCAAATATGGCTTGAAAGCGCCAATGAAAACAGCGGAAGGGGGCATACT 286
consensus_7822#2      ------------------------------------------------------------
consensus_7822#1      TGCTTCATTCAGGACATATGAGCGATGCATCGCGGAGAAATTTAAAGATGTGGCACCATC 286
                                                                                  

consensus_7822#0      GAGGCCTGGCTTTGCCTTGTGTGTGTTCTTCTTTGGACTATTCAGGTAAGACTTCATGTG 346
consensus_7822#2      ------------------------------------------------------------
consensus_7822#1      TGCACTATCACTTCTTGAGACTCTCCTGTCTATTGATCCTGACATGAGAGGCACAG---- 342
                                                                                  

consensus_7822#0      GCCAAATATTAGGCTAGGCATCTTCTTTAGCTCCACAACTGATGATGTGAAGAACTGTTC 406
consensus_7822#2      ------------------------------------------------------------
consensus_7822#1      --CAACTGATGCTCTCAACAGTGAGGTTAATACCGCCCTTCACATTCTAGGCAACACTCT 400
                                                                                  

consensus_7822#0      CGTGGAAACATCAGCCGATGAATCGAGACTAAACCCGATTGACGCATCTAGGTGAGGCGG 466
consensus_7822#2      ------------------------------------------------------------
consensus_7822#1      CACAGGCAAC-------------------------------------------------- 410
                                                                                  

consensus_7822#0      AGGAAACCTCTCGAGTTTTGTTGTGCTTGTGCTTGTCACCAATCTTGGGATATTTGGTTT 526
consensus_7822#2      ------------------------------------------------------------
consensus_7822#1      ------------------------------------------------------------
                                                                                  

consensus_7822#0      AGCTTGAGGCTTATTATTGACATCTGGAGTAAATACTCTGCGCCCAGGATTTTGTGACAT 586
consensus_7822#2      ------------------------------------------------------------
consensus_7822#1      ------------------------------------------------------------
                                                                                  

consensus_7822#0      GGGCTTTCTTGCTGTGGTCTGACGTTCTACTGAACCATTAGCCCTCAGTTTCCTTTTATG 646
consensus_7822#2      ------------------------------------------------------------
consensus_7822#1      ------------------------------------------------------------
                                                                                  

consensus_7822#0      CTTCTCATACTTCAACTTCACATCTATTTCTTTACATGGTGGATACCGGGGAAGGCTTGA 706
consensus_7822#2      ------------------------------------------------------------
consensus_7822#1      ------------------------------------------------------------
                                                                                  

consensus_7822#0      TGGTTCACAGGCATATGGTTCTGTCCTGAAGAACTCACTGTTGAGAGCATCAGTTGCTGT 766
consensus_7822#2      ------------------------------------------------------------
consensus_7822#1      ------------------------------------------------------------
                                                                                  

consensus_7822#0      GCCTCTCATGTCAGGATCAATAGACAGGAGAGTCTCAA 804
consensus_7822#2      --------------------------------------
consensus_7822#1      --------------------------------------