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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7827#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1443 fasta sequence
[CGATCTTGGTCGCCGTCGTCGTCGTCGTCGTCGTCGTCGTGGAGGCGGTTCTTGGCGGAGGAGGAGTCACACAGGAGTGGGTGAGAGAGGGGGTACATGAGGAGGTGGGGTGAGGGGGGAGGGAGGAGGAAAGCTGGGGAAGGAGTTGGGCTTGCTGGGGTGCGTCAATGAGGTGGTGGCGGCGGTGGCGGCGTCGTGGGGCGCGATGAGCGACGGGGCGCGCGTGGAGGCGGCGCCGCGGCTCGCGCAATGGCGCGTCGACGTGCTCCCCTGCTACACCTACCGCAAGTCCGAGCCCTTCCGCATCGGCCTCTGGAACTGGTACCTATCTGTGGAGAGAAATAACAAGCAAACTTGTGTTAAGGTCTTTGCGGAGTTATCGAATTCTGCCAAGAATACAACCCCAGCCCCTATTGCTTCCTTCATCACAAAACTTCTCATATCTTTTCCTCCAAATCAGAAGACCATAGTTCATCCAGGAATTTTTGACAAGCCGCTGAAACACGAAGGTTTTGTGTGGGCAATTGATAGTACTGTTACAGGAAGATTTGTGATTGAGATAGAGTTTCTTGACCTGAAAATTGCAGATCCATCTGGTGGTGAACCAGCCTCAATTTGGGCTTCCCACCAAATCAAGAAATCTTCAGACAACACTGCACTGTCATCCTTGGCGAGAATGCTGCAAGAAGGCATCCTCACCGACATCACAATCAACGCTACCGACGGCAGCATTATGGCCCACCGTGCAATCCTGGCCAGCCGTTCCCCTGTCTTCAGGAGCATGTTCTCGCACGACCTCAAGGAGAAAGAACTCTCAACAGTTGACATCTCTGACATGTCCCTTGAAGCATGCCAGGCCTTCCTCAACTACATTTATGGTGACCTACGCAGCGAAGAGTTCCTCACCCACAGGTTAGCTCTTCTCAGAGCTGCCGATAAGTATGACATCTCTGATCTTAAGGAGGCATGCCATGAGAGCCTGTTAGAGGACATCGACACGAAGAATGTGCTCGAGAGGCTTCAGATGGCGCACTTGTACCGATTGCAAAAGCTCAAGGATGGCTGCTTGAGATTTCTGGTAGATTTCAGAAAGGTGTATGAAATGCATGACGATTTCAAGGTGTTCCTCCAGACAGCAGACAGGGATATCATAGCTGAAATCTTCCAAGGTATTCTTACAACATGGAGTGGGCGATAAGCATGTTTATACGGTATATCTGGTTTGGTTCAGAAGCATTCTTTCCAGAATTGTTGCTGGTAAAGCATGTAAATATATAGTACTACATTTTACATGCCATCAAATTGGCTCTAAATTTAATGTATATATACCTTGATTGGATTTTGTACATATCATATATGTAAATCTAATTCTTGTATCCGACTCCACGTATTGTAACAATTCTGCTGATCTGGAAGAAAATATTACTTCAGATTTCCATAAAA]
[+] EMBL AK100472 [CGATCTTGGTCGCCGTCGTCGTCGTCGTCGTCGTCGTCGTGGAGGCGGTTCTTGGCGGAGGAGGAGTCACACAGGAGTGGGTGAGAGAGGGGGTACATGAGGAGGTGGGGTGAGGGGGGAGGGAGGAGGAAAGCTGGGGAAGGAGTTGGGCTTGCTGGGGTGCGTCAATGAGGTGGTGGCGGCGGTGGCGGCGTCGTGGGGCGCGATGAGCGACGGGGCGCGCGTGGAGGCGGCGCCGCGGCTCGCGCAATGGCGCGTCGACGTGCTCCCCTGCTACACCTACCGCAAGTCCGAGCCCTTCCGCATCGGCCTCTGGAACTGGTACCTATCTGTGGAGAGAAATAACAAGCAAACTTGTGTTAAGGTCTTTGCGGAGTTATCGAATTCTGCCAAGAATACAACCCCAGCCCCTATTGCTTCCTTCATCACAAAACTTCTCATATCTTTTCCTCCAAATCAGAAGACCATAGTTCATCCAGGAATTTTTGACAAGCCGCTGAAACACGAAGGTTTTGTGTGGGCAATTGATAGTACTGTTACAGGAAGATTTGTGATTGAGATAGAGTTTCTTGACCTGAAAATTGCAGATCCATCTGGTGGTGAACCAGCCTCAATTTGGGCTTCCCACCAAATCAAGAAATCTTCAGACAACACTGCACTGTCATCCTTGGCGAGAATGCTGCAAGAAGGCATCCTCACCGACATCACAATCAACGCTACCGACGGCAGCATTATGGCCCACCGTGCAATCCTGGCCAGCCGTTCCCCTGTCTTCAGGAGCATGTTCTCGCACGACCTCAAGGAGAAAGAACTCTCAACAGTTGACATCTCTGACATGTCCCTTGAAGCATGCCAGGCCTTCCTCAACTACATTTATGGTGACCTACGCAGCGAAGAGTTCCTCACCCACAGGTTAGCTCTTCTCAGAGCTGCCGATAAGTATGACATCTCTGATCTTAAGGAGGCATGCCATGAGAGCCTGTTAGAGGACATCGACACGAAGAATGTGCTCGAGAGGCTTCAGATGGCGCACTTGTACCGATTGCAAAAGCTCAAGGATGGCTGCTTGAGATTTCTGGTAGATTTCAGAAAGGTGTATGAAATGCATGACGATTTCAAGGTGTTCCTCCAGACAGCAGACAGGGATATCATAGCTGAAATCTTCCAAGGTATTCTTACAACATGGAGTGGGCGATAAGCATGTTTATACGGTATATCTGGTTTGGTTCAGAAGCATTCTTTCCAGAATTGTTGCTGGTAAAGCATGTAAATATATAGTACTACATTTTACATGCCATCAAATTGGCTCTAAATTTAATGTATATATACCTTGATTGGATTTTGTACATATCATATATGTAAATCTAATTCTTGTATCCGACTCCACGTATTGTAACAATTCTGCTGATCTGGAAGAAAATATTACTTCAGATTTCCAT ]
[-] EMBL CB656134 [ TCCCACCAAATCAAGAAATCTTCAGACAACACTGCACTGTCATCCTTGGCGAGAATGCTGCAAGAAGGCATCCTCACCGACATCACAATCAACGCTACCGACGGCAGCATTATGGCCCACCGTGCAATCCTGGCCAGCCGTTCCCCTGTCTTCAGGAGCATGTTCTCGCACGACCTCAAGGAGAAAGAACTCTCAACAGTTGACATCTCTGACATGTCCCTTGAAGCATGCCAGGCCTTCCTCAACTACATTTATGGTGACCTACGCAGCGAAGAGTTCCTCACCCACAGGTTAGCTCTTCTCAGAGCTGCCGATAAGTATGACATCTCTGATCTTAAGGAGGCATGCCATGAGAGCCTGTTAGAGGACATCGACACGAAGAATGTGCTCGAGAGGCTTCAGATGGCGCACTTGTACCGATTGCAAAAGCTCAAGGATGGCTGCTTGAGATTTCTGGTAGATTTCAGAAAGGTGTATGAAATGCATGACGATTTCAAGGTGTTCCTCCAGACAGCAGACAGGGATATCATAGCTGAAATCTTCCAAGGTATTCTTACAACATGGAGTGGGCGATAAGCATGTTTATACGGTATATCTGGTTTGGTTCAGAAGCATTCTTTCCAGAATTGTTGCTGGTAAAGCATGTAAATATATAGTACTACATTTTACATGCCATCAAATTGGCTCTAAATTTAATGTATATATACCTTGATTGGATTTTGTACATATCATATATGTAAATCTAATTCTTGTATCCGACTCCACGTATTGTAACAATTTAAGGGATCTGGAAGAAAATATTACTT ]
[-] EMBL CF308494 [ GAGTTCCTCACCCACAGGTTAGCTCTTCTCAGAGCTGCCGATAAGTATGACATCTCTGATCTTAAGGAGGCATGCCATGAGAGCCTGTTAGAGGACATCGACACGAAGAATGTGCTCGAGAGGCTTCAGATGGCGCACTTGTACCGATTGCAAAAGCTCAAGGATGGCTGCTTGAGATTTCTGGTAGATTTCAGAAAGGTGTATGAAATGCATGACGATTTCAAGGTGTTCCTCCAGACAGCAGACAGGGATATCATAGCTGAAATCTTCCAAGGTATTCTTACAACATGGAGTGGGCGATAAGCATGTTTATACGGTATATCTGGTTTGGTTCAGAAGCATTCTTTCCAGAATTGTTGCTGGTAAAGCATGTAAATATATAGTACTACATTTTACATGCCATCAAATTGGCTCTAAATTTAATGTATATATACCTTGATTGGATTTTGTACATATCATATATGTAAATCTAATTCTTGTATCCGACTCCACGTATTGTAACAATTCTGCTGATCTGGAAGAAAATATTACTTCAGATTTCAAAAAAA]
consensusID : consensus_7827#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 576 fasta sequence
[TGAAGGAGTAGAAAACAGGAAGATTTGTGATTGAGATAGAGTTTCTTGACCTGAAAATTGCAGATCCATCTGGTGGTGAACCAGCCTCAATTTGGGCTTCCCACCAAATCAAGAAATCTTCAGACAACACTGCACTGTCATCCTTGGCGAGAATGCTGCAAGAAGGCATCCTCACCGACATCACAATCAACGCTACCGACGGCAGCATTATGGCCCACCGTGCAATCCTGGCCAGCCGTTCCCCTGTCTTCAGGAGCATGTTCTCGCACGACCTCAAGGAGAAAGAACTCTCAACAGTTGACATCTCTGACATGTCCCTTGAAGCATGCCAGGCCTTCCTCAACTACATTTATGGTGACCTACGCAGCGAAGAGTTCCTCACCCACAGGTTAGCTCTTCTCAGAGCTGCCGATAAGTATGACATCTCTGATCTTAAGGAGGCATGCCATGAGAGCCTGTTAGAGGACATCGACACGAAGAATGTGCTCGAGAGGCTTCAGATGGCGCACTTGTACCGATTGCAAAAGCTCAAGGATGGCTGCTTGAGATTTCTGGTAGATTTCAGAAAGGTGTATG]
[+] EMBL CF308493 [TGAAGGAGTAGAAAACAGGAAGATTTGTGATTGAGATAGAGTTTCTTGACCTGAAAATTGCAGATCCATCTGGTGGTGAACCAGCCTCAATTTGGGCTTCCCACCAAATCAAGAAATCTTCAGACAACACTGCACTGTCATCCTTGGCGAGAATGCTGCAAGAAGGCATCCTCACCGACATCACAATCAACGCTACCGACGGCAGCATTATGGCCCACCGTGCAATCCTGGCCAGCCGTTCCCCTGTCTTCAGGAGCATGTTCTCGCACGACCTCAAGGAGAAAGAACTCTCAACAGTTGACATCTCTGACATGTCCCTTGAAGCATGCCAGGCCTTCCTCAACTACATTTATGGTGACCTACGCAGCGAAGAGTTCCTCACCCACAGGTTAGCTCTTCTCAGAGCTGCCGATAAGTATGACATCTCTGATCTTAAGGAGGCATGCCATGAGAGCCTGTTAGAGGACATCGACACGAAGAATGTGCTCGAGAGGCTTCAGATGGCGCACTTGTACCGATTGCAAAAGCTCAAGGATGGCTGCTTGAGATTTCTGGTAGATTTCAGAAAGGTGTATG]
consensusID : consensus_7827#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 489 fasta sequence
[GGGGCGCGTCAATGACGTGGTGGCGGCGGTGGCGGCGTCGTGGGGCGCGATGAGCGACGGGGCGCGCGTGGAGGCGGCGCCGCGGCTCGCGCAATGGCGCGTGGACGTGCTCCCCTGCTACACCTACCGCAAGTCCGAGCCCTTCCGCATCGGCCTCTGGAACTGGTTCGACTCTTTATGTGTCCATTCCTCCCTGGAAAAGAAGCTTTTGCAGTAGATTTTTGGAGAGTACAGTTGCTTGTTCTGTTTGCTGATTTTGTTACGGGTGTTCTGAGATGAATTTGATATGAAGTTTGATCGTTTTATCTGGTGTGTTAAGTGAATCTTGTGTTGTAGTTTGGCATGGAATCATTTTTTTGTTTTTTGTTGTGAATAGTGAATGGATGGCCTGAGGTGTTTATGAGTTCATGTATTTTCGGTGGTGCAGAAGTAGTCAATTTCTTTTAATTTTATTTTCCATGTAACAGTAATTTCGGAAGGAGTGATCCA]
[+] EMBL CB640126 [GGGGCGCGTCAATGACGTGGTGGCGGCGGTGGCGGCGTCGTGGGGCGCGATGAGCGACGGGGCGCGCGTGGAGGCGGCGCCGCGGCTCGCGCAATGGCGCGTGGACGTGCTCCCCTGCTACACCTACCGCAAGTCCGAGCCCTTCCGCATCGGCCTCTGGAACTGGTTCGACTCTTTATGTGTCCATTCCTCCCTGGAAAAGAAGCTTTTGCAGTAGATTTTTGGAGAGTACAGTTGCTTGTTCTGTTTGCTGATTTTGTTACGGGTGTTCTGAGATGAATTTGATATGAAGTTTGATCGTTTTATCTGGTGTGTTAAGTGAATCTTGTGTTGTAGTTTGGCATGGAATCATTTTTTTGTTTTTTGTTGTGAATAGTGAATGGATGGCCTGAGGTGTTTATGAGTTCATGTATTTTCGGTGGTGCAGAAGTAGTCAATTTCTTTTAATTTTATTTTCCATGTAACAGTAATTTCGGAAGGAGTGATCCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7827#0 CGATCTTGGTCGCCGTCGTCGTCGTCGTCGTCGTCGTCGTGGAGGCGGTTCTTGGCGGAG 60
consensus_7827#1 ------------------------------------------------------------
consensus_7827#2 ------------------------------------------------------------
consensus_7827#0 GAGGAGTCACACAGGAGTGGGTGAGAGAGGGGGTACATGAGGAGGTGGGGTGAGGGGGGA 120
consensus_7827#1 ------------------------------------------------------------
consensus_7827#2 ------------------------------------------------------------
consensus_7827#0 GGGAGGAGGAAAGCTGGGGAAGGAGTTGGGCTTGCTGGGGTGCGTCAATGAGGTGGTGGC 180
consensus_7827#1 ------------------------------------------------------------
consensus_7827#2 ------------------------------------------------------------
consensus_7827#0 GGCGGTGGCGGCGTCGTGGGGCGCGATGAGCGACGGGGCGCGCGTGGAGGCGGCGCCGCG 240
consensus_7827#1 ------------------------------------------------------------
consensus_7827#2 ------------------------------------------------------------
consensus_7827#0 GCTCGCGCAATGGCGCGTCGACGTGCTCCCCTGCTACACCTACCGCAAGTCCGAGCCCTT 300
consensus_7827#1 ------------------------------------------------------------
consensus_7827#2 ------------------------------------------------------------
consensus_7827#0 CCGCATCGGCCTCTGGAACTGGTACCTATCTGTGGAGAGAAATAACAAGCAAACTTGTGT 360
consensus_7827#1 ------------------------------------------------------------
consensus_7827#2 ------------------------------------------------------------
consensus_7827#0 TAAGGTCTTTGCGGAGTTATCGAATTCTGCCAAGAATACAACCCCAGCCCCTATTGCTTC 420
consensus_7827#1 ------------------------------------------------------------
consensus_7827#2 ------------------------------------------------------------
consensus_7827#0 CTTCATCACAAAACTTCTCATATCTTTTCCTCCAAATCAGAAGACCATAGTTCATCCAGG 480
consensus_7827#1 ------------------------------------------------------------
consensus_7827#2 ------------------------------------------------------------
consensus_7827#0 AATTTTTGACAAGCCGCTGAAACACGAAGGTTTTGTGTGGGCAATTGATAGTACTGTTA- 539
consensus_7827#1 ---------------------------------------------TGAAGGAGTAGAAAA 15
consensus_7827#2 ------------------------------------------------------------
consensus_7827#0 CAGGAAGATTTGTGATTGAGATAGAGTTTCTTGACCTGAAAATTGCAGATCCATCTGGTG 599
consensus_7827#1 CAGGAAGATTTGTGATTGAGATAGAGTTTCTTGACCTGAAAATTGCAGATCCATCTGGTG 75
consensus_7827#2 ------------------------------------------------------------
consensus_7827#0 GTGAACCAGCCTCAATTTGGGCTTCCCACCAAATCAAGAAATCTTCAGACAACACTGCAC 659
consensus_7827#1 GTGAACCAGCCTCAATTTGGGCTTCCCACCAAATCAAGAAATCTTCAGACAACACTGCAC 135
consensus_7827#2 -----------------GGGGCGCGTCAATGACGTGGTGGCGGCGGTGGCGGCGTCGTGG 43
**** ** * * * * *
consensus_7827#0 TGTCATCCTTGGCGAGAATGC-TGCAAGAAGGCATCCTCACCGACATCACAATCAACGCT 718
consensus_7827#1 TGTCATCCTTGGCGAGAATGC-TGCAAGAAGGCATCCTCACCGACATCACAATCAACGCT 194
consensus_7827#2 -GGCGCGATGAGCGACGGGGCGCGCGTGGAGGCGGCGCCGCGGCTCGCGCAAT-GGCGC- 100
* * * **** ** ** * **** * * * * * **** ***
consensus_7827#0 ACCGACG-GCAGCATTATGGCCCACCGTGCAATCCTGGCCAGCCGTTCCCC--TGTCTTC 775
consensus_7827#1 ACCGACG-GCAGCATTATGGCCCACCGTGCAATCCTGGCCAGCCGTTCCCC--TGTCTTC 251
consensus_7827#2 GTGGACGTGCTCCCCTGCTACACCTACCGCAAGTCCG---AGCCCTTCCGCATCGGCCTC 157
**** ** * * * * **** * * **** **** * * * **
consensus_7827#0 AGGAGCATGTTCTCGCACGACCTCAAGGAGAAAGAACTCTCAACAGTTGACATCTCTGAC 835
consensus_7827#1 AGGAGCATGTTCTCGCACGACCTCAAGGAGAAAGAACTCTCAACAGTTGACATCTCTGAC 311
consensus_7827#2 TGGAACTGGTTCGACT----CTTTATGTGTCCATTCCTCCCTGGAAAAGAAGCTTTTGCA 213
*** * **** * * * * * *** * * ** * **
consensus_7827#0 AT-GTCCCTTGAAGCATGCCAGGCCTTCCTCAACT-ACATTTATGGTGACCTACGCAGCG 893
consensus_7827#1 AT-GTCCCTTGAAGCATGCCAGGCCTTCCTCAACT-ACATTTATGGTGACCTACGCAGCG 369
consensus_7827#2 GTAGATTTTTGGAGAGTACAGTTGCTTGTTCTGTTTGCTGATTTTGTTACGGGTGTTCTG 273
* * *** ** * * *** ** * * * * ** ** * *
consensus_7827#0 AAGAGTTCCTCACCCACAGGTTAGCTCTTCTCAGAGCTGCCGATAAGTATGACATCTCTG 953
consensus_7827#1 AAGAGTTCCTCACCCACAGGTTAGCTCTTCTCAGAGCTGCCGATAAGTATGACATCTCTG 429
consensus_7827#2 AGATGAATTTGATATGAAGTTTGATCGTTTTATCTGGTGT-GTTAAGTGA---ATCTTGT 329
* * * * ** ** ** * * ** * ***** ****
consensus_7827#0 ATCTTAAGGAGGCATGCCATGAGAGCCT-GTTAGAGGACATCGACA-CGAAGAATGTGCT 1011
consensus_7827#1 ATCTTAAGGAGGCATGCCATGAGAGCCT-GTTAGAGGACATCGACA-CGAAGAATGTGCT 487
consensus_7827#2 GTTGTAGTTTGGCATGGAATCATTTTTTTGTTTTTTGTTGTGAATAGTGAATGGATGGCC 389
* ** ****** ** * * *** * * * * *** **
consensus_7827#0 CGAGAGGCTTCAGA--TGGCGCACTTGTACCGATTGCAAAAGC--TCAAGGATGGCTGCT 1067
consensus_7827#1 CGAGAGGCTTCAGA--TGGCGCACTTGTACCGATTGCAAAAGC--TCAAGGATGGCTGCT 543
consensus_7827#2 TGAGGTGTTTATGAGTTCATGTATTTTCGGTGGT-GCAGAAGTAGTCAATTTCTTTTAAT 448
*** * ** ** * * * ** * * *** *** **** * *
consensus_7827#0 TGAGATTTCTG-GTAG-----ATTTCAGAAAGGTGTATGAAATGCATGACGATTTCAAGG 1121
consensus_7827#1 TGAGATTTCTG-GTAG-----ATTTCAGAAAGGTGTATG--------------------- 576
consensus_7827#2 TTTATTTTCCATGTAACAGTAATTTCGGAAGGAGTGATCCA------------------- 489
* **** *** ***** *** * **
consensus_7827#0 TGTTCCTCCAGACAGCAGACAGGGATATCATAGCTGAAATCTTCCAAGGTATTCTTACAA 1181
consensus_7827#1 ------------------------------------------------------------
consensus_7827#2 ------------------------------------------------------------
consensus_7827#0 CATGGAGTGGGCGATAAGCATGTTTATACGGTATATCTGGTTTGGTTCAGAAGCATTCTT 1241
consensus_7827#1 ------------------------------------------------------------
consensus_7827#2 ------------------------------------------------------------
consensus_7827#0 TCCAGAATTGTTGCTGGTAAAGCATGTAAATATATAGTACTACATTTTACATGCCATCAA 1301
consensus_7827#1 ------------------------------------------------------------
consensus_7827#2 ------------------------------------------------------------
consensus_7827#0 ATTGGCTCTAAATTTAATGTATATATACCTTGATTGGATTTTGTACATATCATATATGTA 1361
consensus_7827#1 ------------------------------------------------------------
consensus_7827#2 ------------------------------------------------------------
consensus_7827#0 AATCTAATTCTTGTATCCGACTCCACGTATTGTAACAATTCTGCTGATCTGGAAGAAAAT 1421
consensus_7827#1 ------------------------------------------------------------
consensus_7827#2 ------------------------------------------------------------
consensus_7827#0 ATTACTTCAGATTTCCATAAAA 1443
consensus_7827#1 ----------------------
consensus_7827#2 ----------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||