These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7827#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1443 fasta sequence [CGATCTTGGTCGCCGTCGTCGTCGTCGTCGTCGTCGTCGTGGAGGCGGTTCTTGGCGGAGGAGGAGTCACACAGGAGTGGGTGAGAGAGGGGGTACATGAGGAGGTGGGGTGAGGGGGGAGGGAGGAGGAAAGCTGGGGAAGGAGTTGGGCTTGCTGGGGTGCGTCAATGAGGTGGTGGCGGCGGTGGCGGCGTCGTGGGGCGCGATGAGCGACGGGGCGCGCGTGGAGGCGGCGCCGCGGCTCGCGCAATGGCGCGTCGACGTGCTCCCCTGCTACACCTACCGCAAGTCCGAGCCCTTCCGCATCGGCCTCTGGAACTGGTACCTATCTGTGGAGAGAAATAACAAGCAAACTTGTGTTAAGGTCTTTGCGGAGTTATCGAATTCTGCCAAGAATACAACCCCAGCCCCTATTGCTTCCTTCATCACAAAACTTCTCATATCTTTTCCTCCAAATCAGAAGACCATAGTTCATCCAGGAATTTTTGACAAGCCGCTGAAACACGAAGGTTTTGTGTGGGCAATTGATAGTACTGTTACAGGAAGATTTGTGATTGAGATAGAGTTTCTTGACCTGAAAATTGCAGATCCATCTGGTGGTGAACCAGCCTCAATTTGGGCTTCCCACCAAATCAAGAAATCTTCAGACAACACTGCACTGTCATCCTTGGCGAGAATGCTGCAAGAAGGCATCCTCACCGACATCACAATCAACGCTACCGACGGCAGCATTATGGCCCACCGTGCAATCCTGGCCAGCCGTTCCCCTGTCTTCAGGAGCATGTTCTCGCACGACCTCAAGGAGAAAGAACTCTCAACAGTTGACATCTCTGACATGTCCCTTGAAGCATGCCAGGCCTTCCTCAACTACATTTATGGTGACCTACGCAGCGAAGAGTTCCTCACCCACAGGTTAGCTCTTCTCAGAGCTGCCGATAAGTATGACATCTCTGATCTTAAGGAGGCATGCCATGAGAGCCTGTTAGAGGACATCGACACGAAGAATGTGCTCGAGAGGCTTCAGATGGCGCACTTGTACCGATTGCAAAAGCTCAAGGATGGCTGCTTGAGATTTCTGGTAGATTTCAGAAAGGTGTATGAAATGCATGACGATTTCAAGGTGTTCCTCCAGACAGCAGACAGGGATATCATAGCTGAAATCTTCCAAGGTATTCTTACAACATGGAGTGGGCGATAAGCATGTTTATACGGTATATCTGGTTTGGTTCAGAAGCATTCTTTCCAGAATTGTTGCTGGTAAAGCATGTAAATATATAGTACTACATTTTACATGCCATCAAATTGGCTCTAAATTTAATGTATATATACCTTGATTGGATTTTGTACATATCATATATGTAAATCTAATTCTTGTATCCGACTCCACGTATTGTAACAATTCTGCTGATCTGGAAGAAAATATTACTTCAGATTTCCATAAAA] [+] EMBL AK100472 [CGATCTTGGTCGCCGTCGTCGTCGTCGTCGTCGTCGTCGTGGAGGCGGTTCTTGGCGGAGGAGGAGTCACACAGGAGTGGGTGAGAGAGGGGGTACATGAGGAGGTGGGGTGAGGGGGGAGGGAGGAGGAAAGCTGGGGAAGGAGTTGGGCTTGCTGGGGTGCGTCAATGAGGTGGTGGCGGCGGTGGCGGCGTCGTGGGGCGCGATGAGCGACGGGGCGCGCGTGGAGGCGGCGCCGCGGCTCGCGCAATGGCGCGTCGACGTGCTCCCCTGCTACACCTACCGCAAGTCCGAGCCCTTCCGCATCGGCCTCTGGAACTGGTACCTATCTGTGGAGAGAAATAACAAGCAAACTTGTGTTAAGGTCTTTGCGGAGTTATCGAATTCTGCCAAGAATACAACCCCAGCCCCTATTGCTTCCTTCATCACAAAACTTCTCATATCTTTTCCTCCAAATCAGAAGACCATAGTTCATCCAGGAATTTTTGACAAGCCGCTGAAACACGAAGGTTTTGTGTGGGCAATTGATAGTACTGTTACAGGAAGATTTGTGATTGAGATAGAGTTTCTTGACCTGAAAATTGCAGATCCATCTGGTGGTGAACCAGCCTCAATTTGGGCTTCCCACCAAATCAAGAAATCTTCAGACAACACTGCACTGTCATCCTTGGCGAGAATGCTGCAAGAAGGCATCCTCACCGACATCACAATCAACGCTACCGACGGCAGCATTATGGCCCACCGTGCAATCCTGGCCAGCCGTTCCCCTGTCTTCAGGAGCATGTTCTCGCACGACCTCAAGGAGAAAGAACTCTCAACAGTTGACATCTCTGACATGTCCCTTGAAGCATGCCAGGCCTTCCTCAACTACATTTATGGTGACCTACGCAGCGAAGAGTTCCTCACCCACAGGTTAGCTCTTCTCAGAGCTGCCGATAAGTATGACATCTCTGATCTTAAGGAGGCATGCCATGAGAGCCTGTTAGAGGACATCGACACGAAGAATGTGCTCGAGAGGCTTCAGATGGCGCACTTGTACCGATTGCAAAAGCTCAAGGATGGCTGCTTGAGATTTCTGGTAGATTTCAGAAAGGTGTATGAAATGCATGACGATTTCAAGGTGTTCCTCCAGACAGCAGACAGGGATATCATAGCTGAAATCTTCCAAGGTATTCTTACAACATGGAGTGGGCGATAAGCATGTTTATACGGTATATCTGGTTTGGTTCAGAAGCATTCTTTCCAGAATTGTTGCTGGTAAAGCATGTAAATATATAGTACTACATTTTACATGCCATCAAATTGGCTCTAAATTTAATGTATATATACCTTGATTGGATTTTGTACATATCATATATGTAAATCTAATTCTTGTATCCGACTCCACGTATTGTAACAATTCTGCTGATCTGGAAGAAAATATTACTTCAGATTTCCAT ] [-] EMBL CB656134 [ TCCCACCAAATCAAGAAATCTTCAGACAACACTGCACTGTCATCCTTGGCGAGAATGCTGCAAGAAGGCATCCTCACCGACATCACAATCAACGCTACCGACGGCAGCATTATGGCCCACCGTGCAATCCTGGCCAGCCGTTCCCCTGTCTTCAGGAGCATGTTCTCGCACGACCTCAAGGAGAAAGAACTCTCAACAGTTGACATCTCTGACATGTCCCTTGAAGCATGCCAGGCCTTCCTCAACTACATTTATGGTGACCTACGCAGCGAAGAGTTCCTCACCCACAGGTTAGCTCTTCTCAGAGCTGCCGATAAGTATGACATCTCTGATCTTAAGGAGGCATGCCATGAGAGCCTGTTAGAGGACATCGACACGAAGAATGTGCTCGAGAGGCTTCAGATGGCGCACTTGTACCGATTGCAAAAGCTCAAGGATGGCTGCTTGAGATTTCTGGTAGATTTCAGAAAGGTGTATGAAATGCATGACGATTTCAAGGTGTTCCTCCAGACAGCAGACAGGGATATCATAGCTGAAATCTTCCAAGGTATTCTTACAACATGGAGTGGGCGATAAGCATGTTTATACGGTATATCTGGTTTGGTTCAGAAGCATTCTTTCCAGAATTGTTGCTGGTAAAGCATGTAAATATATAGTACTACATTTTACATGCCATCAAATTGGCTCTAAATTTAATGTATATATACCTTGATTGGATTTTGTACATATCATATATGTAAATCTAATTCTTGTATCCGACTCCACGTATTGTAACAATTTAAGGGATCTGGAAGAAAATATTACTT ] [-] EMBL CF308494 [ GAGTTCCTCACCCACAGGTTAGCTCTTCTCAGAGCTGCCGATAAGTATGACATCTCTGATCTTAAGGAGGCATGCCATGAGAGCCTGTTAGAGGACATCGACACGAAGAATGTGCTCGAGAGGCTTCAGATGGCGCACTTGTACCGATTGCAAAAGCTCAAGGATGGCTGCTTGAGATTTCTGGTAGATTTCAGAAAGGTGTATGAAATGCATGACGATTTCAAGGTGTTCCTCCAGACAGCAGACAGGGATATCATAGCTGAAATCTTCCAAGGTATTCTTACAACATGGAGTGGGCGATAAGCATGTTTATACGGTATATCTGGTTTGGTTCAGAAGCATTCTTTCCAGAATTGTTGCTGGTAAAGCATGTAAATATATAGTACTACATTTTACATGCCATCAAATTGGCTCTAAATTTAATGTATATATACCTTGATTGGATTTTGTACATATCATATATGTAAATCTAATTCTTGTATCCGACTCCACGTATTGTAACAATTCTGCTGATCTGGAAGAAAATATTACTTCAGATTTCAAAAAAA] consensusID : consensus_7827#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 576 fasta sequence [TGAAGGAGTAGAAAACAGGAAGATTTGTGATTGAGATAGAGTTTCTTGACCTGAAAATTGCAGATCCATCTGGTGGTGAACCAGCCTCAATTTGGGCTTCCCACCAAATCAAGAAATCTTCAGACAACACTGCACTGTCATCCTTGGCGAGAATGCTGCAAGAAGGCATCCTCACCGACATCACAATCAACGCTACCGACGGCAGCATTATGGCCCACCGTGCAATCCTGGCCAGCCGTTCCCCTGTCTTCAGGAGCATGTTCTCGCACGACCTCAAGGAGAAAGAACTCTCAACAGTTGACATCTCTGACATGTCCCTTGAAGCATGCCAGGCCTTCCTCAACTACATTTATGGTGACCTACGCAGCGAAGAGTTCCTCACCCACAGGTTAGCTCTTCTCAGAGCTGCCGATAAGTATGACATCTCTGATCTTAAGGAGGCATGCCATGAGAGCCTGTTAGAGGACATCGACACGAAGAATGTGCTCGAGAGGCTTCAGATGGCGCACTTGTACCGATTGCAAAAGCTCAAGGATGGCTGCTTGAGATTTCTGGTAGATTTCAGAAAGGTGTATG] [+] EMBL CF308493 [TGAAGGAGTAGAAAACAGGAAGATTTGTGATTGAGATAGAGTTTCTTGACCTGAAAATTGCAGATCCATCTGGTGGTGAACCAGCCTCAATTTGGGCTTCCCACCAAATCAAGAAATCTTCAGACAACACTGCACTGTCATCCTTGGCGAGAATGCTGCAAGAAGGCATCCTCACCGACATCACAATCAACGCTACCGACGGCAGCATTATGGCCCACCGTGCAATCCTGGCCAGCCGTTCCCCTGTCTTCAGGAGCATGTTCTCGCACGACCTCAAGGAGAAAGAACTCTCAACAGTTGACATCTCTGACATGTCCCTTGAAGCATGCCAGGCCTTCCTCAACTACATTTATGGTGACCTACGCAGCGAAGAGTTCCTCACCCACAGGTTAGCTCTTCTCAGAGCTGCCGATAAGTATGACATCTCTGATCTTAAGGAGGCATGCCATGAGAGCCTGTTAGAGGACATCGACACGAAGAATGTGCTCGAGAGGCTTCAGATGGCGCACTTGTACCGATTGCAAAAGCTCAAGGATGGCTGCTTGAGATTTCTGGTAGATTTCAGAAAGGTGTATG] consensusID : consensus_7827#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 489 fasta sequence [GGGGCGCGTCAATGACGTGGTGGCGGCGGTGGCGGCGTCGTGGGGCGCGATGAGCGACGGGGCGCGCGTGGAGGCGGCGCCGCGGCTCGCGCAATGGCGCGTGGACGTGCTCCCCTGCTACACCTACCGCAAGTCCGAGCCCTTCCGCATCGGCCTCTGGAACTGGTTCGACTCTTTATGTGTCCATTCCTCCCTGGAAAAGAAGCTTTTGCAGTAGATTTTTGGAGAGTACAGTTGCTTGTTCTGTTTGCTGATTTTGTTACGGGTGTTCTGAGATGAATTTGATATGAAGTTTGATCGTTTTATCTGGTGTGTTAAGTGAATCTTGTGTTGTAGTTTGGCATGGAATCATTTTTTTGTTTTTTGTTGTGAATAGTGAATGGATGGCCTGAGGTGTTTATGAGTTCATGTATTTTCGGTGGTGCAGAAGTAGTCAATTTCTTTTAATTTTATTTTCCATGTAACAGTAATTTCGGAAGGAGTGATCCA] [+] EMBL CB640126 [GGGGCGCGTCAATGACGTGGTGGCGGCGGTGGCGGCGTCGTGGGGCGCGATGAGCGACGGGGCGCGCGTGGAGGCGGCGCCGCGGCTCGCGCAATGGCGCGTGGACGTGCTCCCCTGCTACACCTACCGCAAGTCCGAGCCCTTCCGCATCGGCCTCTGGAACTGGTTCGACTCTTTATGTGTCCATTCCTCCCTGGAAAAGAAGCTTTTGCAGTAGATTTTTGGAGAGTACAGTTGCTTGTTCTGTTTGCTGATTTTGTTACGGGTGTTCTGAGATGAATTTGATATGAAGTTTGATCGTTTTATCTGGTGTGTTAAGTGAATCTTGTGTTGTAGTTTGGCATGGAATCATTTTTTTGTTTTTTGTTGTGAATAGTGAATGGATGGCCTGAGGTGTTTATGAGTTCATGTATTTTCGGTGGTGCAGAAGTAGTCAATTTCTTTTAATTTTATTTTCCATGTAACAGTAATTTCGGAAGGAGTGATCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7827#0 CGATCTTGGTCGCCGTCGTCGTCGTCGTCGTCGTCGTCGTGGAGGCGGTTCTTGGCGGAG 60 consensus_7827#1 ------------------------------------------------------------ consensus_7827#2 ------------------------------------------------------------ consensus_7827#0 GAGGAGTCACACAGGAGTGGGTGAGAGAGGGGGTACATGAGGAGGTGGGGTGAGGGGGGA 120 consensus_7827#1 ------------------------------------------------------------ consensus_7827#2 ------------------------------------------------------------ consensus_7827#0 GGGAGGAGGAAAGCTGGGGAAGGAGTTGGGCTTGCTGGGGTGCGTCAATGAGGTGGTGGC 180 consensus_7827#1 ------------------------------------------------------------ consensus_7827#2 ------------------------------------------------------------ consensus_7827#0 GGCGGTGGCGGCGTCGTGGGGCGCGATGAGCGACGGGGCGCGCGTGGAGGCGGCGCCGCG 240 consensus_7827#1 ------------------------------------------------------------ consensus_7827#2 ------------------------------------------------------------ consensus_7827#0 GCTCGCGCAATGGCGCGTCGACGTGCTCCCCTGCTACACCTACCGCAAGTCCGAGCCCTT 300 consensus_7827#1 ------------------------------------------------------------ consensus_7827#2 ------------------------------------------------------------ consensus_7827#0 CCGCATCGGCCTCTGGAACTGGTACCTATCTGTGGAGAGAAATAACAAGCAAACTTGTGT 360 consensus_7827#1 ------------------------------------------------------------ consensus_7827#2 ------------------------------------------------------------ consensus_7827#0 TAAGGTCTTTGCGGAGTTATCGAATTCTGCCAAGAATACAACCCCAGCCCCTATTGCTTC 420 consensus_7827#1 ------------------------------------------------------------ consensus_7827#2 ------------------------------------------------------------ consensus_7827#0 CTTCATCACAAAACTTCTCATATCTTTTCCTCCAAATCAGAAGACCATAGTTCATCCAGG 480 consensus_7827#1 ------------------------------------------------------------ consensus_7827#2 ------------------------------------------------------------ consensus_7827#0 AATTTTTGACAAGCCGCTGAAACACGAAGGTTTTGTGTGGGCAATTGATAGTACTGTTA- 539 consensus_7827#1 ---------------------------------------------TGAAGGAGTAGAAAA 15 consensus_7827#2 ------------------------------------------------------------ consensus_7827#0 CAGGAAGATTTGTGATTGAGATAGAGTTTCTTGACCTGAAAATTGCAGATCCATCTGGTG 599 consensus_7827#1 CAGGAAGATTTGTGATTGAGATAGAGTTTCTTGACCTGAAAATTGCAGATCCATCTGGTG 75 consensus_7827#2 ------------------------------------------------------------ consensus_7827#0 GTGAACCAGCCTCAATTTGGGCTTCCCACCAAATCAAGAAATCTTCAGACAACACTGCAC 659 consensus_7827#1 GTGAACCAGCCTCAATTTGGGCTTCCCACCAAATCAAGAAATCTTCAGACAACACTGCAC 135 consensus_7827#2 -----------------GGGGCGCGTCAATGACGTGGTGGCGGCGGTGGCGGCGTCGTGG 43 **** ** * * * * * consensus_7827#0 TGTCATCCTTGGCGAGAATGC-TGCAAGAAGGCATCCTCACCGACATCACAATCAACGCT 718 consensus_7827#1 TGTCATCCTTGGCGAGAATGC-TGCAAGAAGGCATCCTCACCGACATCACAATCAACGCT 194 consensus_7827#2 -GGCGCGATGAGCGACGGGGCGCGCGTGGAGGCGGCGCCGCGGCTCGCGCAAT-GGCGC- 100 * * * **** ** ** * **** * * * * * **** *** consensus_7827#0 ACCGACG-GCAGCATTATGGCCCACCGTGCAATCCTGGCCAGCCGTTCCCC--TGTCTTC 775 consensus_7827#1 ACCGACG-GCAGCATTATGGCCCACCGTGCAATCCTGGCCAGCCGTTCCCC--TGTCTTC 251 consensus_7827#2 GTGGACGTGCTCCCCTGCTACACCTACCGCAAGTCCG---AGCCCTTCCGCATCGGCCTC 157 **** ** * * * * **** * * **** **** * * * ** consensus_7827#0 AGGAGCATGTTCTCGCACGACCTCAAGGAGAAAGAACTCTCAACAGTTGACATCTCTGAC 835 consensus_7827#1 AGGAGCATGTTCTCGCACGACCTCAAGGAGAAAGAACTCTCAACAGTTGACATCTCTGAC 311 consensus_7827#2 TGGAACTGGTTCGACT----CTTTATGTGTCCATTCCTCCCTGGAAAAGAAGCTTTTGCA 213 *** * **** * * * * * *** * * ** * ** consensus_7827#0 AT-GTCCCTTGAAGCATGCCAGGCCTTCCTCAACT-ACATTTATGGTGACCTACGCAGCG 893 consensus_7827#1 AT-GTCCCTTGAAGCATGCCAGGCCTTCCTCAACT-ACATTTATGGTGACCTACGCAGCG 369 consensus_7827#2 GTAGATTTTTGGAGAGTACAGTTGCTTGTTCTGTTTGCTGATTTTGTTACGGGTGTTCTG 273 * * *** ** * * *** ** * * * * ** ** * * consensus_7827#0 AAGAGTTCCTCACCCACAGGTTAGCTCTTCTCAGAGCTGCCGATAAGTATGACATCTCTG 953 consensus_7827#1 AAGAGTTCCTCACCCACAGGTTAGCTCTTCTCAGAGCTGCCGATAAGTATGACATCTCTG 429 consensus_7827#2 AGATGAATTTGATATGAAGTTTGATCGTTTTATCTGGTGT-GTTAAGTGA---ATCTTGT 329 * * * * ** ** ** * * ** * ***** **** consensus_7827#0 ATCTTAAGGAGGCATGCCATGAGAGCCT-GTTAGAGGACATCGACA-CGAAGAATGTGCT 1011 consensus_7827#1 ATCTTAAGGAGGCATGCCATGAGAGCCT-GTTAGAGGACATCGACA-CGAAGAATGTGCT 487 consensus_7827#2 GTTGTAGTTTGGCATGGAATCATTTTTTTGTTTTTTGTTGTGAATAGTGAATGGATGGCC 389 * ** ****** ** * * *** * * * * *** ** consensus_7827#0 CGAGAGGCTTCAGA--TGGCGCACTTGTACCGATTGCAAAAGC--TCAAGGATGGCTGCT 1067 consensus_7827#1 CGAGAGGCTTCAGA--TGGCGCACTTGTACCGATTGCAAAAGC--TCAAGGATGGCTGCT 543 consensus_7827#2 TGAGGTGTTTATGAGTTCATGTATTTTCGGTGGT-GCAGAAGTAGTCAATTTCTTTTAAT 448 *** * ** ** * * * ** * * *** *** **** * * consensus_7827#0 TGAGATTTCTG-GTAG-----ATTTCAGAAAGGTGTATGAAATGCATGACGATTTCAAGG 1121 consensus_7827#1 TGAGATTTCTG-GTAG-----ATTTCAGAAAGGTGTATG--------------------- 576 consensus_7827#2 TTTATTTTCCATGTAACAGTAATTTCGGAAGGAGTGATCCA------------------- 489 * **** *** ***** *** * ** consensus_7827#0 TGTTCCTCCAGACAGCAGACAGGGATATCATAGCTGAAATCTTCCAAGGTATTCTTACAA 1181 consensus_7827#1 ------------------------------------------------------------ consensus_7827#2 ------------------------------------------------------------ consensus_7827#0 CATGGAGTGGGCGATAAGCATGTTTATACGGTATATCTGGTTTGGTTCAGAAGCATTCTT 1241 consensus_7827#1 ------------------------------------------------------------ consensus_7827#2 ------------------------------------------------------------ consensus_7827#0 TCCAGAATTGTTGCTGGTAAAGCATGTAAATATATAGTACTACATTTTACATGCCATCAA 1301 consensus_7827#1 ------------------------------------------------------------ consensus_7827#2 ------------------------------------------------------------ consensus_7827#0 ATTGGCTCTAAATTTAATGTATATATACCTTGATTGGATTTTGTACATATCATATATGTA 1361 consensus_7827#1 ------------------------------------------------------------ consensus_7827#2 ------------------------------------------------------------ consensus_7827#0 AATCTAATTCTTGTATCCGACTCCACGTATTGTAACAATTCTGCTGATCTGGAAGAAAAT 1421 consensus_7827#1 ------------------------------------------------------------ consensus_7827#2 ------------------------------------------------------------ consensus_7827#0 ATTACTTCAGATTTCCATAAAA 1443 consensus_7827#1 ---------------------- consensus_7827#2 ---------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||