These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_783#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1407 fasta sequence [GGGTAACTTTTATTTCCGCTAAAAGTTTTCGGTTTTTGGGTATATCAACCATTCACCCCCCCTCTGATTGGCTTAGTTCTTATGATTCGATCCTATAAGTGGAACAGTGATCATCCAAAACCACTCGTATGCAACACGCCAGAAGAGAAGAGGAGAGAATCAATTGTCCATTGGATTATCGCAGCTGCAATCAGTGAACACGATCGATCAAACTGAATAGAGAAAAAGATTACCGGAAAGTCGAAATGCACACGGTTACGTTACGTGCCAAGCTTGGTAGCTCCCCAGATGTCGTGGTCAGCGTACAAGAGTGCAATTAGATCGTGCCATTTCAGCTGCTAGAGTGCCACTCCGAGTCGGGCTCTGCACAAAACAAAAGGAAGAATCTGTTCTGATCCAGGTGGAGACAGCGACGTGAGGAGGAGAATTACTCGAAGTCAAAAGCAGTAACCATGACAAGCAGCGACGAGAAAGAGAGGAAGGAGAGCTCTCGAGAGGAAAGGGAAGAAACGAAGAATCAAGAATCAGCTCCACCTCCCGTGCCACCGTATCCATCCACCCAAAGCCCCGGCCTTTTCATCTTGTCCCCCTCTTTTTTTTTCCCTGCCTTTTCGTCTTCGTCTTCCTCTAGCCTCACTCAGCATCTCCGTTGCACCGGCCAAGAATTCCACGCAGAGCTGGCCGGCGGCGACGGTGGACTCGCCGAGGAAGCAAGGATGTCATGAGCCGGCGGTGTGAAGGCGCCGCCGGGGGATGGAGAACCGGGAGAGGGCGGGGGCCGGCGCCGTCGGGAGCGCCGGCAGCCTCGGCCTCCGCGTCGGGCAGGCCGTCTTCTCGTCGGCGTCCCTGCTGTTCATGTCCGTCGGCGTCGAGTTCTTCAGCTATACTGCCTTCTGCTTCCTAGTTACAATAATGGGCTTGGTGATCCCCTGGAGCTGTACACTCGCCATGATCGACGTGTACTCCATACTTGTAGGGTGCCCTCTTCGGGTACCAGGTGTCATGGTCATTGTCGTCATCGGAGACTGGGTCCTGGCAATACTTTCACTAGCAGCTGCCAGCTCAAGTGCGGCGGTCATCGATCTTCTGCTCCAATTCCATGGATCTCACTGCTCTCCCAGATTCTGTGGGAGGTATCAGCTGTCGGCGATGATGGCTTTCTTGTCCTGGTTCCTAACGGCCGCTTCCTCACTCTTCAACCTCTGGTTCATCGCCTCCCGGTGACCACTGCTGATTGCTGATTCTGGATTACGCCCTAACTCCAGTATGACTCCACAATCAGTCATGGATTTGGATACCGTATGTGCATAGCACTATAGCTTGGAAAGTCTATTTATTTTGTAATTTTAGTCATTGTGGGTCTGAATGAAGAGTGGTGAAGTTACACTCCACATGAATACATGATCA] [+] EMBL AK106933 [GGGTAACTTTTATTTCCGCTAAAAGTTTTCGGTTTTTGGGTATATCAACCATTCACCCCCCCTCTGATTGGCTTAGTTCTTATGATTCGATCCTATAAGTGGAACAGTGATCATCCAAAACCACTCGTATGCAACACGCCAGAAGAGAAGAGGAGAGAATCAATTGTCCATTGGATTATCGCAGCTGCAATCAGTGAACACGATCGATCAAACTGAATAGAGAAAAAGATTACCGGAAAGTCGAAATGCACACGGTTACGTTACGTGCCAAGCTTGGTAGCTCCCCAGATGTCGTGGTCAGCGTACAAGAGTGCAATTAGATCGTGCCATTTCAGCTGCTAGAGTGCCACTCCGAGTCGGGCTCTGCACAAAACAAAAGGAAGAATCTGTTCTGATCCAGGTGGAGACAGCGACGTGAGGAGGAGAATTACTCGAAGTCAAAAGCAGTAACCATGACAAGCAGCGACGAGAAAGAGAGGAAGGAGAGCTCTCGAGAGGAAAGGGAAGAAACGAAGAATCAAGAATCAGCTCCACCTCCCGTGCCACCGTATCCATCCACCCAAAGCCCCGGCCTTTTCATCTTGTCCCCCTCTTTTTTTTTCCCTGCCTTTTCGTCTTCGTCTTCCTCTAGCCTCACTCAGCATCTCCGTTGCACCGGCCAAGAATTCCACGCAGAGCTGGCCGGCGGCGACGGTGGACTCGCCGAGGAAGCAAGGATGTCATGAGCCGGCGGTGTGAAGGCGCCGCCGGGGGATGGAGAACCGGGAGAGGGCGGGGGCCGGCGCCGTCGGGAGCGCCGGCAGCCTCGGCCTCCGCGTCGGGCAGGCCGTCTTCTCGTCGGCGTCCCTGCTGTTCATGTCCGTCGGCGTCGAGTTCTTCAGCTATACTGCCTTCTGCTTCCTAGTTACAATAATGGGCTTGGTGATCCCCTGGAGCTGTACACTCGCCATGATCGACGTGTACTCCATACTTGTAGGGTGCCCTCTTCGGGTACCAGGTGTCATGGTCATTGTCGTCATCGGAGACTGGGTCCTGGCAATACTTTCACTAGCAGCTGCCAGCTCAAGTGCGGCGGTCATCGATCTTCTGCTCCAATTCCATGGATCTCACTGCTCTCCCAGATTCTGTGGGAGGTATCAGCTGTCGGCGATGATGGCTTTCTTGTCCTGGTTCCTAACGGCCGCTTCCTCACTCTTCAACCTCTGGTTCATCGCCTCCCGGTGACCACTGCTGATTGCTGATTCTGGATTACGCCCTAACTCCAGTATGACTCCACAATCAGTCATGGATTTGGATACCGTATGTGCATAGCACTATAGCTTGGAAAGTCTATTTATTTTGTAATTTTAGTCATTGTGGGTCTGAATGAAGAGTGGTGAAGTTACACTCCACATGAATACATGATCA] consensusID : consensus_783#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 591 fasta sequence [GACCTGTACACTCCCATGATCAACGTTACTCCCATACTTTAGGTCCCTCTTCGGTTACCAGTTTTCATGTTCATTTTCGTCATCGGAGACTGGGTATGTAGAAAGACACATCTCCTTGTGTTTCTCATTAAGCTTTATATTTCACCCTCTCTTGTAAAAATCAGATAGAGATCAAGAACTTTGCGTCAATCTTTTTCAGGTCCTGCCAATACTTTCACTACAGCTCCAGCTCAATCGCGGTCATCGATCTTCTGCTCCAATTCCATGGATCTCACTGCTCTCCCAGATTCTGTGGGAGGTATCACTGTCGCGATGATGGCTTTCTTGTCCTGGTTCCTAACGCCGCTTCCTCACTCTTCAACCTCTGGTTCATCGCCTCCCGGTGACCACTGCTGATTGCTGATTCTGGATTACGCCCTAACTCCAGTATGACTCCACAATCAGTCATGGATTTGGATACCGTATGTGCATAGCACTATAGCTTGGAAAGTCTATTTATTTTGTAATTTTAGTCATTGTGGGTCTGAGTGAAGAGTGGTGAAGTTACACTCCACATGAATACATGATCATCAATTTCTGAACCTAAAAAAA] [+] EMBL BI813293 [GACCTGTACACTCCCATGATCAACGTTACTCCCATACTTTAGGTCCCTCTTCGGTTACCAGTTTTCATGTTCATTTTCGTCATCGGAGACTGGGTATGTAGAAAGACACATCTCCTTGTGTTTCTCATTAAGCTTTATATTTCACCCTCTCTTGTAAAAATCAGATAGAGATCAAGAACTTTGCGTCAATCTTTTTCAGGTCCTGCCAATACTTTCACTACAGCTCCAGCTCAATCGCGGTCATCGATCTTCTGCTCCAATTCCATGGATCTCACTGCTCTCCCAGATTCTGTGGGAGGTATCACTGTCGCGATGATGGCTTTCTTGTCCTGGTTCCTAACGCCGCTTCCTCACTCTTCAACCTCTGGTTCATCGCCTCCCGGTGACCACTGCTGATTGCTGATTCTGGATTACGCCCTAACTCCAGTATGACTCCACAATCAGTCATGGATTTGGATACCGTATGTGCATAGCACTATAGCTTGGAAAGTCTATTTATTTTGTAATTTTAGTCATTGTGGGTCTGAGTGAAGAGTGGTGAAGTTACACTCCACATGAATACATGATCATCAATTTCTGAACCTAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_783#0 GGGTAACTTTTATTTCCGCTAAAAGTTTTCGGTTTTTGGGTATATCAACCATTCACCCCC 60 consensus_783#1 ------------------------------------------------------------ consensus_783#0 CCTCTGATTGGCTTAGTTCTTATGATTCGATCCTATAAGTGGAACAGTGATCATCCAAAA 120 consensus_783#1 ------------------------------------------------------------ consensus_783#0 CCACTCGTATGCAACACGCCAGAAGAGAAGAGGAGAGAATCAATTGTCCATTGGATTATC 180 consensus_783#1 ------------------------------------------------------------ consensus_783#0 GCAGCTGCAATCAGTGAACACGATCGATCAAACTGAATAGAGAAAAAGATTACCGGAAAG 240 consensus_783#1 ------------------------------------------------------------ consensus_783#0 TCGAAATGCACACGGTTACGTTACGTGCCAAGCTTGGTAGCTCCCCAGATGTCGTGGTCA 300 consensus_783#1 ------------------------------------------------------------ consensus_783#0 GCGTACAAGAGTGCAATTAGATCGTGCCATTTCAGCTGCTAGAGTGCCACTCCGAGTCGG 360 consensus_783#1 ------------------------------------------------------------ consensus_783#0 GCTCTGCACAAAACAAAAGGAAGAATCTGTTCTGATCCAGGTGGAGACAGCGACGTGAGG 420 consensus_783#1 ------------------------------------------------------------ consensus_783#0 AGGAGAATTACTCGAAGTCAAAAGCAGTAACCATGACAAGCAGCGACGAGAAAGAGAGGA 480 consensus_783#1 ------------------------------------------------------------ consensus_783#0 AGGAGAGCTCTCGAGAGGAAAGGGAAGAAACGAAGAATCAAGAATCAGCTCCACCTCCCG 540 consensus_783#1 ------------------------------------------------------------ consensus_783#0 TGCCACCGTATCCATCCACCCAAAGCCCCGGCCTTTTCATCTTGTCCCCCTCTTTTTTTT 600 consensus_783#1 ------------------------------------------------------------ consensus_783#0 TCCCTGCCTTTTCGTCTTCGTCTTCCTCTAGCCTCACTCAGCATCTCCGTTGCACCGGCC 660 consensus_783#1 ------------------------------------------------------------ consensus_783#0 AAGAATTCCACGCAGAGCTGGCCGGCGGCGACGGTGGACTCGCCGAGGAAGCAAGGATGT 720 consensus_783#1 ------------------------------------------------------------ consensus_783#0 CATGAGCCGGCGGTGTGAAGGCGCCGCCGGGGGATGGAGAACCGGGAGAGGGCGGGGGCC 780 consensus_783#1 ------------------------------------------------------------ consensus_783#0 GGCGCCGTCGGGAGCGCCGGCAGCCTCGGCCTCCGCGTCGGGCAGGCCGTCTTCTCGTCG 840 consensus_783#1 -------------------------------------------GACCTGTACACTC-CCA 16 * ** *** * consensus_783#0 GCGTCCCTGCTGTTCATGTCCGTCGGCGTCGAGTTCTTCAGCTATACTGCCTTCTGCTTC 900 consensus_783#1 TGATCAACGTTACTCCCATACTTTAGGTCC---CTCTTCGGTTAC-CAGTTTTCATGTTC 72 ** * * ** * * * * * ***** * ** * * *** *** consensus_783#0 CTAGTTACAATAATGGGCTTGGTGATCCCCTGGAGCTGTACA-CTCGCCATGATCGACGT 959 consensus_783#1 ATTTTCGTCATCGGAGACTGGGTA----TGTAGAAAGACACATCTCCTTGTGTTTCTCAT 128 * * ** * ** *** * ** *** *** ** * * * consensus_783#0 GTA-CTCCATACTTGTAGGGTGCCCTCTTCGGGT--ACCAGGTGTCATGGTCATTGTCGT 1016 consensus_783#1 TAAGCTTTATATTT-CACCCTCTCTTGTAAAAATCAGATAGAGATCAAGAACTTTG-CGT 186 * ** *** ** * * * * * * ** *** * * *** *** consensus_783#0 CATCGGAGACTGGGTCCTGGCAATACTTTCACTAGCAGCTGCCAGCTCAAGTGCGGCGGT 1076 consensus_783#1 CAATCTTTTTCAGGTCCTGCCAATACTTTCACTA-CAGCT-CCAGCTCAATCGCG---GT 241 ** ******* ************** ***** ********* *** ** consensus_783#0 CATCGATCTTCTGCTCCAATTCCATGGATCTCACTGCTCTCCCAGATTCTGTGGGAGGTA 1136 consensus_783#1 CATCGATCTTCTGCTCCAATTCCATGGATCTCACTGCTCTCCCAGATTCTGTGGGAGGTA 301 ************************************************************ consensus_783#0 TCAGCTGTCGGCGATGATGGCTTTCTTGTCCTGGTTCCTAACGGCCGCTTCCTCACTCTT 1196 consensus_783#1 TCA-CTGTCG-CGATGATGGCTTTCTTGTCCTGGTTCCTAACG-CCGCTTCCTCACTCTT 358 *** ****** ******************************** **************** consensus_783#0 CAACCTCTGGTTCATCGCCTCCCGGTGACCACTGCTGATTGCTGATTCTGGATTACGCCC 1256 consensus_783#1 CAACCTCTGGTTCATCGCCTCCCGGTGACCACTGCTGATTGCTGATTCTGGATTACGCCC 418 ************************************************************ consensus_783#0 TAACTCCAGTATGACTCCACAATCAGTCATGGATTTGGATACCGTATGTGCATAGCACTA 1316 consensus_783#1 TAACTCCAGTATGACTCCACAATCAGTCATGGATTTGGATACCGTATGTGCATAGCACTA 478 ************************************************************ consensus_783#0 TAGCTTGGAAAGTCTATTTATTTTGTAATTTTAGTCATTGTGGGTCTGAATGAAGAGTGG 1376 consensus_783#1 TAGCTTGGAAAGTCTATTTATTTTGTAATTTTAGTCATTGTGGGTCTGAGTGAAGAGTGG 538 ************************************************* ********** consensus_783#0 TGAAGTTACACTCCACATGAATACATGATCA---------------------- 1407 consensus_783#1 TGAAGTTACACTCCACATGAATACATGATCATCAATTTCTGAACCTAAAAAAA 591 ******************************* |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||