cluster # 7843

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Oryza sativa
cluster # 7843 cluster # 7843 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7843#0 length = 1247 sequences # 4

consensus_7843#1 length = 512 sequences # 1

consensusID : consensus_7843#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1247
fasta sequence

                              [CCCCGCCGACGCGCACTCGATCCCCCCCGCCTCCGCCTCCGCCTCCGCCTCCGCGTCGCCCATCTCGAGATCCCCCGCATGGCGACGCTCACCGTCCCCTCCGCCGTCCCGCCCGTCGCCGACGACTGCGACCAGCTCCGCAAGGCCTTCCAAGGGTGGGGCACGAACGAGGCGCTCATCATCTCCATCCTGGCCCACCGCGACGCGGCGCAGCGGCGCGC-CATCCGCCGCGCCTACGCCGACACCTACGGCGAGGAGCTCCTCCGCAGCATCACCGACGAGATCTCCGGCGACTTCGAGAGGGCCGTGATCCTGTGGACGCTGGACCCGGCGGAGCGCGACGCGGTGCTCGCCAACGAGGTCGCGAGGAAGTGGTACCCAGGGAGCGGGAGCCGCGTGC-TGGTCGAGATCGCGTGCGCGCGCGGCCCCGCGCAGCTG-TTCGCGGTCAGGCAGGCCTACCACGAGCGCTTCAAGCGCTCGCTCGAGGAGGACGTCGCGGCGCACGCCACTGGTGACTTCCGCAAGCTCTTGGTGCCACTTATAAGTGCTTACCGCTATGAGGGGCCGGAAGTCAACACAAAGTTGGCACATTCAGAAGCCAAAATTCTGCATGAGAAGATCCAGCATAAGGCATATGGTGATGATGAGATCATCAGAATTCTCACTACTAGGAGCAAGGCTCAGTTGATTGCGACATTCAATCGTTACAATGATGAATATGGTCACCCAATCAACAAGGATCTCAAGGCTGATCCCAAGGACGAGTTCCTTTCCACGCTGCGTGCAATCATCCGCTGCTTCTGTTGCCCTGACAGGTACTTCGAGAAAGTCATCAGGTTGGCCATCGCAGGCATGGGAACAGACGAGAACTCCCTCACTAGGATCATTACCACTCGTGCCGAGGTGGATCTGAAGCTGATCACGGAGGCGTACCAGAAGAGGAACAGTGTCCCGCTGGAGCGTGCGGTCGCAGGGGACACCTCCGGGGACTACGAGAGGATGCTTCTTGCTCTTCTGGGTCAGGAGCAGTGAGCCATGCCTATCTTGCCCAGTCACACACTTCATGTGATCATGTCATATCAGAGAATAAACCTGTTATGCAGGGGACACAGCCGTGGTGATTATGATGTTGTTTTTCCAGTGTACGGTACTGTTTGCTGCAGCTTGCATAACAGTGACGATGAAATAAATCATAGTGGAATGCGTTGGCTCATGGGACCTCACTTATTTTGCAACTTTTTGACAGG]

[+] EMBL CA757263             [CCCCGCCGACGCGCACTCGATCCCCCCCGCCTCCGCCTCCGCCTCCGCCTCCGCGTCGCCCATCTCGAGATCCCCCGCATGGCGACGCTCACCGTCCCCTCCGCCGTCCCGCCCGTCGCCGACGACTGCGACCAGCTCCGCAAGGCCTTCCAAGGGTGGGGCACGAACGAGGCGCTCATCATCTCCATCCTGGCCCACCGCGACGCGGCGCAGCGGCGCGC CATCCGCCGCGCCTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AK072559             [                                                              TCTCGAGATCCCCCGCATGGCGACGCTCACCGTCCCCTCCGCCGTCCCGCCCGTCGCCGACGACTGCGACCAGCTCCGCAAGGCCTTCCAAGGGTGGGGCACGAACGAGGCGCTCATCATCTCCATCCTGGCCCACCGCGACGCGGCGCAGCGGCGCGC CATCCGCCGCGCCTACGCCGACACCTACGGCGAGGAGCTCCTCCGCAGCATCACCGACGAGATCTCCGGCGACTTCGAGAGGGCCGTGATCCTGTGGACGCTGGACCCGGCGGAGCGCGACGCGGTGCTCGCCAACGAGGTCGCGAGGAAGTGGTACCCAGGGAGCGGGAGCCGCGTGC TGGTCGAGATCGCGTGCGCGCGCGGCCCCGCGCAGCTG TTCGCGGTCAGGCAGGCCTACCACGAGCGCTTCAAGCGCTCGCTCGAGGAGGACGTCGCGGCGCACGCCACTGGTGACTTCCGCAAGCTCTTGGTGCCACTTATAAGTGCTTACCGCTATGAGGGGCCGGAAGTCAACACAAAGTTGGCACATTCAGAAGCCAAAATTCTGCATGAGAAGATCCAGCATAAGGCATATGGTGATGATGAGATCATCAGAATTCTCACTACTAGGAGCAAGGCTCAGTTGATTGCGACATTCAATCGTTACAATGATGAATATGGTCACCCAATCAACAAGGATCTCAAGGCTGATCCCAAGGACGAGTTCCTTTCCACGCTGCGTGCAATCATCCGCTGCTTCTGTTGCCCTGACAGGTACTTCGAGAAAGTCATCAGGTTGGCCATCGCAGGCATGGGAACAGACGAGAACTCCCTCACTAGGATCATTACCACTCGTGCCGAGGTGGATCTGAAGCTGATCACGGAGGCGTACCAGAAGAGGAACAGTGTCCCGCTGGAGCGTGCGGTCGCAGGGGACACCTCCGGGGACTACGAGAGGATGCTTCTTGCTCTTCTGGGTCAGGAGCAGTGAGCCATGCCTATCTTGCCCAGTCACACACTTCATGTGATCATGTCATATCAGAGAATAAACCTGTTATGCAGGGGACACAGCCGTGGTGATTATGATGTTGTTTTTCCAGTGTACGGTACTGTTTGCTGCAGCTTGCATAACAGTGACGATGAAATAAATCATAGTGGAATGCGTTGGCTCATGGGACCTCACTTATTTTGCAACTTTTTGACAGG]
[+] EMBL C72574               [                                                              TCTCGAGATCCCCCGCATGGCGACGCTCACCGTCCCCTCCGCCGTCCCGCCCGTCGCCGACGACTGCGACCAGCTCCGCAAGGCCTTCCAAGGGTGGGGCACGAACGAGGCGCTCATCATCTCCATCCTGGCCCACCGCGACG GACGCAG GGCGCGCACATCCGCCGCGCCTACGNCGACAGCTACGGCGAGGAGCTCCTCCGCAGCATCANCGACGAGATCTCCGGCGACTTCGAGAGGGCCGTGATCCTGTGGACGCTGGACCCGGCGGAG GCGACGNGTTGCTCGCCAACGAGGTCGCGAGGAAGTTGTACCCAGGGAGCGGGAGCCGCGTGCTTGGTCGAGATCGCGTTCGNG GCGGCCCCGGNAAGTTGTTTCGCGGTAAGGAAGGCCTA CANGAGCG TTTAAGntttc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BI800842             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     gcgtccagCACTCGTGCCGAGGTGGATCTGAAGCTGATCACGGAGGCGTACCAGAAGAGGAACAGTGTCCCGCTGGAGCGTGCGGTCGCAGGGGACACCTCCGGGGACTACGAGAGGATGCTTCTTGCTCTTCTGGGTCAGGAGCAGTGAGCCATGCCTATCTTGCCCAGTCACACACTTCATGTGATCATGTCATATCAGAGAATAAACCTGTTATGCAGGGGAGACACCCGTGGTGATTATGATGTTGTTTTTCCAGTGTACGGTACTGTTTGCTGCAGCTTGCATAACAGTGACGATGAAATAAATCATAGTGGAATGCGTTGGCTCAaaaaaaaaa                         ]




>consensus_7843#0
CCCCGCCGACGCGCACTCGATCCCCCCCGCCTCCGCCTCCGCCTCCGCCTCCGCGTCGCC
CATCTCGAGATCCCCCGCATGGCGACGCTCACCGTCCCCTCCGCCGTCCCGCCCGTCGCC
GACGACTGCGACCAGCTCCGCAAGGCCTTCCAAGGGTGGGGCACGAACGAGGCGCTCATC
ATCTCCATCCTGGCCCACCGCGACGCGGCGCAGCGGCGCGCCATCCGCCGCGCCTACGCC
GACACCTACGGCGAGGAGCTCCTCCGCAGCATCACCGACGAGATCTCCGGCGACTTCGAG
AGGGCCGTGATCCTGTGGACGCTGGACCCGGCGGAGCGCGACGCGGTGCTCGCCAACGAG
GTCGCGAGGAAGTGGTACCCAGGGAGCGGGAGCCGCGTGCTGGTCGAGATCGCGTGCGCG
CGCGGCCCCGCGCAGCTGTTCGCGGTCAGGCAGGCCTACCACGAGCGCTTCAAGCGCTCG
CTCGAGGAGGACGTCGCGGCGCACGCCACTGGTGACTTCCGCAAGCTCTTGGTGCCACTT
ATAAGTGCTTACCGCTATGAGGGGCCGGAAGTCAACACAAAGTTGGCACATTCAGAAGCC
AAAATTCTGCATGAGAAGATCCAGCATAAGGCATATGGTGATGATGAGATCATCAGAATT
CTCACTACTAGGAGCAAGGCTCAGTTGATTGCGACATTCAATCGTTACAATGATGAATAT
GGTCACCCAATCAACAAGGATCTCAAGGCTGATCCCAAGGACGAGTTCCTTTCCACGCTG
CGTGCAATCATCCGCTGCTTCTGTTGCCCTGACAGGTACTTCGAGAAAGTCATCAGGTTG
GCCATCGCAGGCATGGGAACAGACGAGAACTCCCTCACTAGGATCATTACCACTCGTGCC
GAGGTGGATCTGAAGCTGATCACGGAGGCGTACCAGAAGAGGAACAGTGTCCCGCTGGAG
CGTGCGGTCGCAGGGGACACCTCCGGGGACTACGAGAGGATGCTTCTTGCTCTTCTGGGT
CAGGAGCAGTGAGCCATGCCTATCTTGCCCAGTCACACACTTCATGTGATCATGTCATAT
CAGAGAATAAACCTGTTATGCAGGGGACACAGCCGTGGTGATTATGATGTTGTTTTTCCA
GTGTACGGTACTGTTTGCTGCAGCTTGCATAACAGTGACGATGAAATAAATCATAGTGGA
ATGCGTTGGCTCATGGGACCTCACTTATTTTGCAACTTTTTGACAGG

consensusID : consensus_7843#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 512
fasta sequence

                              [ATGTCACCCAAATCAACCAAGGATCTCAAGCTGATCCAAGGACGAGTTCCTTTCCACAGCTGCGTGGCAATCATCCCTGCTTCTGTTGCCCTGACAGGTACTTCGAGAAAGTCATCAGGTTGGCCATCGCAGGCATGGGAACAGACGAGAACTCCCTCACTAGGATCATTACCACTCGTGCCGAGGTGGATCTGAAGCTGATCACGGAGGCGTACCAGAAGAGGAACAGTGTCCCGCTGGAGCGTCGGTCGCAGGGGACACCTCCGGGGACTACGAGAGGATGCTTCTTGCTCTTCTGGGTCAGGACAGTGACCATGCCTATCTTGCCCAGTCACACACTTCATGTGATCATGTCATATCAGAGAATAAACCTGTTATGCAGGGGAGACAGCCGTGGTGATTATGATGTTGTTTTTCCAGTGTACGGTACTGTTTGCTGCAGCTTGCATAACAGTGACGATGAAATAAATCATAGTGGAATGCGTTGGCTCATGGGACCTCCAAAAAAAAAA]

[+] EMBL BI801109             [ATGTCACCCAAATCAACCAAGGATCTCAAGCTGATCCAAGGACGAGTTCCTTTCCACAGCTGCGTGGCAATCATCCCTGCTTCTGTTGCCCTGACAGGTACTTCGAGAAAGTCATCAGGTTGGCCATCGCAGGCATGGGAACAGACGAGAACTCCCTCACTAGGATCATTACCACTCGTGCCGAGGTGGATCTGAAGCTGATCACGGAGGCGTACCAGAAGAGGAACAGTGTCCCGCTGGAGCGTCGGTCGCAGGGGACACCTCCGGGGACTACGAGAGGATGCTTCTTGCTCTTCTGGGTCAGGACAGTGACCATGCCTATCTTGCCCAGTCACACACTTCATGTGATCATGTCATATCAGAGAATAAACCTGTTATGCAGGGGAGACAGCCGTGGTGATTATGATGTTGTTTTTCCAGTGTACGGTACTGTTTGCTGCAGCTTGCATAACAGTGACGATGAAATAAATCATAGTGGAATGCGTTGGCTCATGGGACCTCCAAAAAAAAAA]




>consensus_7843#1
ATGTCACCCAAATCAACCAAGGATCTCAAGCTGATCCAAGGACGAGTTCCTTTCCACAGC
TGCGTGGCAATCATCCCTGCTTCTGTTGCCCTGACAGGTACTTCGAGAAAGTCATCAGGT
TGGCCATCGCAGGCATGGGAACAGACGAGAACTCCCTCACTAGGATCATTACCACTCGTG
CCGAGGTGGATCTGAAGCTGATCACGGAGGCGTACCAGAAGAGGAACAGTGTCCCGCTGG
AGCGTCGGTCGCAGGGGACACCTCCGGGGACTACGAGAGGATGCTTCTTGCTCTTCTGGG
TCAGGACAGTGACCATGCCTATCTTGCCCAGTCACACACTTCATGTGATCATGTCATATC
AGAGAATAAACCTGTTATGCAGGGGAGACAGCCGTGGTGATTATGATGTTGTTTTTCCAG
TGTACGGTACTGTTTGCTGCAGCTTGCATAACAGTGACGATGAAATAAATCATAGTGGAA
TGCGTTGGCTCATGGGACCTCCAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7843#0      CCCCGCCGACGCGCACTCGATCCCCCCCGCCTCCGCCTCCGCCTCCGCCTCCGCGTCGCC 60
consensus_7843#1      ------------------------------------------------------------
                                                                                  

consensus_7843#0      CATCTCGAGATCCCCCGCATGGCGACGCTCACCGTCCCCTCCGCCGTCCCGCCCGTCGCC 120
consensus_7843#1      ------------------------------------------------------------
                                                                                  

consensus_7843#0      GACGACTGCGACCAGCTCCGCAAGGCCTTCCAAGGGTGGGGCACGAACGAGGCGCTCATC 180
consensus_7843#1      ------------------------------------------------------------
                                                                                  

consensus_7843#0      ATCTCCATCCTGGCCCACCGCGACGCGGCGCAGCGGCGCGCCATCCGCCGCGCCTACGCC 240
consensus_7843#1      ------------------------------------------------------------
                                                                                  

consensus_7843#0      GACACCTACGGCGAGGAGCTCCTCCGCAGCATCACCGACGAGATCTCCGGCGACTTCGAG 300
consensus_7843#1      ------------------------------------------------------------
                                                                                  

consensus_7843#0      AGGGCCGTGATCCTGTGGACGCTGGACCCGGCGGAGCGCGACGCGGTGCTCGCCAACGAG 360
consensus_7843#1      ------------------------------------------------------------
                                                                                  

consensus_7843#0      GTCGCGAGGAAGTGGTACCCAGGGAGCGGGAGCCGCGTGCTGGTCGAGATCGCGTGCGCG 420
consensus_7843#1      ------------------------------------------------------------
                                                                                  

consensus_7843#0      CGCGGCCCCGCGCAGCTGTTCGCGGTCAGGCAGGCCTACCACGAGCGCTTCAAGCGCTCG 480
consensus_7843#1      ------------------------------------------------------------
                                                                                  

consensus_7843#0      CTCGAGGAGGACGTCGCGGCGCACGCCACTGGTGACTTCCGCAAGCTCTTGGTGCCACTT 540
consensus_7843#1      ------------------------------------------------------------
                                                                                  

consensus_7843#0      ATAAGTGCTTACCGCTATGAGGGGCCGGAAGTCAACACAAAGTTGGCACATTCAGAAGCC 600
consensus_7843#1      ------------------------------------------------------------
                                                                                  

consensus_7843#0      AAAATTCTGCATGAGAAGATCCAGCATAAGGCATATGGTGATGATGAGATCATCAGAATT 660
consensus_7843#1      ------------------------------------------------------------
                                                                                  

consensus_7843#0      CTCACTACTAGGAGCAAGGCTCAGTTGATTGCGACATTCAATCGTTACAATGATGAATAT 720
consensus_7843#1      ----------------------------------------------------------AT 2
                                                                                **

consensus_7843#0      GGTCACCCAATCAAC-AAGGATCTCAAGGCTGATCCCAAGGACGAGTTCCTTTCCAC-GC 778
consensus_7843#1      GTCACCCAAATCAACCAAGGATCTCAAG-CTGATCC-AAGGACGAGTTCCTTTCCACAGC 60
                      *    ** ******* ************ ******* ******************** **

consensus_7843#0      TGCGTG-CAATCATCCGCTGCTTCTGTTGCCCTGACAGGTACTTCGAGAAAGTCATCAGG 837
consensus_7843#1      TGCGTGGCAATCATCC-CTGCTTCTGTTGCCCTGACAGGTACTTCGAGAAAGTCATCAGG 119
                      ****** ********* *******************************************

consensus_7843#0      TTGGCCATCGCAGGCATGGGAACAGACGAGAACTCCCTCACTAGGATCATTACCACTCGT 897
consensus_7843#1      TTGGCCATCGCAGGCATGGGAACAGACGAGAACTCCCTCACTAGGATCATTACCACTCGT 179
                      ************************************************************

consensus_7843#0      GCCGAGGTGGATCTGAAGCTGATCACGGAGGCGTACCAGAAGAGGAACAGTGTCCCGCTG 957
consensus_7843#1      GCCGAGGTGGATCTGAAGCTGATCACGGAGGCGTACCAGAAGAGGAACAGTGTCCCGCTG 239
                      ************************************************************

consensus_7843#0      GAGCGTGCGGTCGCAGGGGACACCTCCGGGGACTACGAGAGGATGCTTCTTGCTCTTCTG 1017
consensus_7843#1      GAGCGT-CGGTCGCAGGGGACACCTCCGGGGACTACGAGAGGATGCTTCTTGCTCTTCTG 298
                      ****** *****************************************************

consensus_7843#0      GGTCAGGAGCAGTGAGCCATGCCTATCTTGCCCAGTCACACACTTCATGTGATCATGTCA 1077
consensus_7843#1      GGTCAGGA-CAGTGA-CCATGCCTATCTTGCCCAGTCACACACTTCATGTGATCATGTCA 356
                      ******** ****** ********************************************

consensus_7843#0      TATCAGAGAATAAACCTGTTATGCAGGGGACACAGCCGTGGTGATTATGATGTTGTTTTT 1137
consensus_7843#1      TATCAGAGAATAAACCTGTTATGCAGGGGAGACAGCCGTGGTGATTATGATGTTGTTTTT 416
                      ****************************** *****************************

consensus_7843#0      CCAGTGTACGGTACTGTTTGCTGCAGCTTGCATAACAGTGACGATGAAATAAATCATAGT 1197
consensus_7843#1      CCAGTGTACGGTACTGTTTGCTGCAGCTTGCATAACAGTGACGATGAAATAAATCATAGT 476
                      ************************************************************

consensus_7843#0      GGAATGCGTTGGCTCATGGGACCTCACTTATTTTGCAACTTTTTGACAGG 1247
consensus_7843#1      GGAATGCGTTGGCTCATGGGACCTC--CAAAAAAAAAA------------ 512
                      *************************    *      **