These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7850#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 2173 fasta sequence [TTCTTCTTCCTTCCACAAAAGCAAGAGGTTCCCCGGAGAGCGCGCCGCCGGCGACAAGGACGACGAGCCGCCTCCCCGAATCGCGACCCCGCCCTATCCTCCTCCTCCTCCTCTGTGCGGCCTGCCCCCCTCGCGCGCACGGCCGGGCCGGCGAGGGGTTGACGTGACGCGGCCGGTCGACCTCCTCCTCCGTCTGCAAGGTTTTGATGTCGGACAACAGTTTACGATATTCCAATAATATCTTAGCTGCAGTATAACACCACTGCCCCCATTCTGTTGCCCTCAAATCAGCTCCATTTAGAGTGTTTAAATGTGCTTATCTTCTCGGATTCTCAATGGGAAGACACGATATTTCTCCACTCTCAGAAGCTCGCACACTGAAAACAAATGTATCCTCTCTGTCCCGGTCTCATCTCTCTCACACCATCATCTCCCCATTCTCCTCTCCCGAGCAACCGTCTCGGGTCTTCTCCTTAAGCTACCGCTGGTCCACTCTGTCCTCCGTTCCCTCTATTTGGGGCCTATCCCATCACTCTCTTTCTCCTTCCTCTCCCTACTTCGCCGTTTTGCCAACATGACACTTGATAACTACTCCCTCAACATTGCCATCTCTGCTGCCGCTCGCGTCCCATCACTTGATGTTGGCTCCCAGTTTCATGCCCTTTCTTTGAAACTCAGCCTAGCTTCAGATTCATTTGTCCTTAATGCCCTTATCAACATGTACTCATCTTGTAATTATCCAGCTTCTGCAAGGTTAGTTCTTGATTCTGCTCCACGATGGGCCTCTGACGTAGTTTCTTGGAACACAATCATTGCTGGATACATACGAGGTGGTATGCCTAATAAGGCGTTGCAATCTTTTCACCAAATGGCCAAAGAGCAAGTTAGGCTGGACGAGGTCACTCTGTTAAATGTGCTGGTTGCTTGTGCAAGGACAGGCGCAATGAAGGTTGGGAGCCTTTGTCATGCTCTAGTTGTGCTGAATGGGTTTGAGATAAATTGTTATATTGGATCCTCTTTGGTTAGTATGTATGCAAAGTGTGGTATGGTTGAGGAAGCTCGCAGGGTTTTTAATAGAATGCCTGAAAGGAATGTAGTTTGCTGGACCTCAATGATTGCTGGATGTACACAATCTGGTAGGTTTAAAGAGGCTGTTGATCTGTTTAGGGACATGCAAATTGCTGGTGTGAAGGCTGATGACGCTACAATTGCTACTGTTGTATCATCATGTGGCCAGATGGGAGCACTTGACTTGGGACGGTATCTCCATGCTTATTGTGATGGTCATGGTTTAGGGAAAGAGCTTTCTGTGAAAAATTCGTTGATTGATATGTACTCGAAGTGCGGGGATGTAAACAAGGCCTATCAGATATTTCATGGATTGACAAAGCGGGATGTGTTTACTTGGACAGTAATGATAATGGGCTTTGCTATGAATGGTCTCTGCGTTGAGGCACTAGATTTGTTTGCACAGATGGAAGGAGAAGATAAGGTTATGCCGAATGAGGTCATTTTTTTGGGTGTGCTAACTGCTTGCAGCCATGGAGGTTTAGTGGAACAGGGGTACCATCACTTCCATCGCATGTCCAAGGTCTACAACCTTGTGCCAAGAATCGAACACTATGGATGCATGGTCGACCTTTTGGGACGTGCCAAGCTGTTGGCAGAGGCAGAGCAATTCATTAAAGATATGCCTGTCGCTCCTGATGTGGTAGTATGGCGGTCATTGTTGTTTGCCTGTAGAGCTTCTGGACAAGTGGGGCTTGCAGAATATGCAGCAGAAAGAATTGAACAGTTGGAACCAAAAAGGTGTGGAGGGCATGTTTTACTCTCTAATGTATATGCTACCACATTAAGATGGGTTGATGTGAATAATGTGCGGACAGGGATGGGCAATAGTAGGACAAGTAAGAAGCCCGGTTGCTCTTTCATTGAAGTCGATGGCTGCATACATGAATTCTTTGCGGGAGATGAGTCTCATTTTGAGACAGAAGCTATATGCAACACTCTTTTTGGGATCAATGAGCTACTAGTGGCGGAGTCCTTCCTAATGTAAAAGCTTAGGAGTTCCATATCAACCAAATATATCCATTTCAAATGTACAATGCTGTGG---TTTTTTTTATCAGCTTA-TGGAATGATGAAATTGAAAATTTGTCTTTAAAAAAAATAAGGA] [+] EMBL AK070462 [TTCTTCTTCCTTCCACAAAAGCAAGAGGTTCCCCGGAGAGCGCGCCGCCGGCGACAAGGACGACGAGCCGCCTCCCCGAATCGCGACCCCGCCCTATCCTCCTCCTCCTCCTCTGTGCGGCCTGCCCCCCTCGCGCGCACGGCCGGGCCGGCGAGGGGTTGACGTGACGCGGCCGGTCGACCTCCTCCTCCGTCTGCAAGGTTTTGATGTCGGACAACAGTTTACGATATTCCAATAATATCTTAGCTGCAGTATAACACCACTGCCCCCATTCTGTTGCCCTCAAATCAGCTCCATTTAGAGTGTTTAAATGTGCTTATCTTCTCGGATTCTCAATGGGAAGACACGATATTTCTCCACTCTCAGAAGCTCGCACACTGAAAACAAATGTATCCTCTCTGTCCCGGTCTCATCTCTCTCACACCATCATCTCCCCATTCTCCTCTCCCGAGCAACCGTCTCGGGTCTTCTCCTTAAGCTACCGCTGGTCCACTCTGTCCTCCGTTCCCTCTATTTGGGGCCTATCCCATCACTCTCTTTCTCCTTCCTCTCCCTACTTCGCCGTTTTGCCAACATGACACTTGATAACTACTCCCTCAACATTGCCATCTCTGCTGCCGCTCGCGTCCCATCACTTGATGTTGGCTCCCAGTTTCATGCCCTTTCTTTGAAACTCAGCCTAGCTTCAGATTCATTTGTCCTTAATGCCCTTATCAACATGTACTCATCTTGTAATTATCCAGCTTCTGCAAGGTTAGTTCTTGATTCTGCTCCACGATGGGCCTCTGACGTAGTTTCTTGGAACACAATCATTGCTGGATACATACGAGGTGGTATGCCTAATAAGGCGTTGCAATCTTTTCACCAAATGGCCAAAGAGCAAGTTAGGCTGGACGAGGTCACTCTGTTAAATGTGCTGGTTGCTTGTGCAAGGACAGGCGCAATGAAGGTTGGGAGCCTTTGTCATGCTCTAGTTGTGCTGAATGGGTTTGAGATAAATTGTTATATTGGATCCTCTTTGGTTAGTATGTATGCAAAGTGTGGTATGGTTGAGGAAGCTCGCAGGGTTTTTAATAGAATGCCTGAAAGGAATGTAGTTTGCTGGACCTCAATGATTGCTGGATGTACACAATCTGGTAGGTTTAAAGAGGCTGTTGATCTGTTTAGGGACATGCAAATTGCTGGTGTGAAGGCTGATGACGCTACAATTGCTACTGTTGTATCATCATGTGGCCAGATGGGAGCACTTGACTTGGGACGGTATCTCCATGCTTATTGTGATGGTCATGGTTTAGGGAAAGAGCTTTCTGTGAAAAATTCGTTGATTGATATGTACTCGAAGTGCGGGGATGTAAACAAGGCCTATCAGATATTTCATGGATTGACAAAGCGGGATGTGTTTACTTGGACAGTAATGATAATGGGCTTTGCTATGAATGGTCTCTGCGTTGAGGCACTAGATTTGTTTGCACAGATGGAAGGAGAAGATAAGGTTATGCCGAATGAGGTCATTTTTTTGGGTGTGCTAACTGCTTGCAGCCATGGAGGTTTAGTGGAACAGGGGTACCATCACTTCCATCGCATGTCCAAGGTCTACAACCTTGTGCCAAGAATCGAACACTATGGATGCATGGTCGACCTTTTGGGACGTGCCAAGCTGTTGGCAGAGGCAGAGCAATTCATTAAAGATATGCCTGTCGCTCCTGATGTGGTAGTATGGCGGTCATTGTTGTTTGCCTGTAGAGCTTCTGGACAAGTGGGGCTTGCAGAATATGCAGCAGAAAGAATTGAACAGTTGGAACCAAAAAGGTGTGGAGGGCATGTTTTACTCTCTAATGTATATGCTACCACATTAAGATGGGTTGATGTGAATAATGTGCGGACAGGGATGGGCAATAGTAGGACAAGTAAGAAGCCCGGTTGCTCTTTCATTGAAGTCGATGGCTGCATACATGAATTCTTTGCGGGAGATGAGTCTCATTTTGAGACAGAAGCTATATGCAACACTCTTTTTGGGATCAATGAGCTACTAGTGGCGGAGTCCTTCCTAATGTAAAAGCTTAGGAGTTCCATATCAACCAAATATATCCATTTCAAATGTACAATGCTGTGG TTTTTTTTATCAGCTTA TGGAATGATGAAATTGAAAATTTGTCT ] [+] EMBL CB629298 [ TGTTGCCCTCAAATCAGCTCCATTTAGAGTGTTTAAATGTGCTTATCTTCTCGGATTCTCAATGGGAAGACACGATATTTCTCCACTCTCAGAAGCTCGCACACTGAAAACAAATGTATCCTCTCTGTCCCGGTCTCATCTCTCTCACACCATCATCTCCCCATTCTCCTCTCCCGAGCAACCGTCTCGGGTCTTCTCCTTAAGCTACCGCTGGTCCACTCTGTCCTCCGTTCCCTCTCTTTGGGGCTTACCCCATCACTCTCTTTCTCCTTCCTCTCCCTACTTCGCCGTTTTGCCAACATGACACTTGATAACTACTCCCTCAACATTGCCATCTCTGCTGCCGCTCGCATCCCATCACTTGATGTTGGCTCCCAGTTTCATGCCCTTTCTTTGAAACTCAGCCTAGCTTCAGATTCATTTGTCCTTAATGCCCTTATCAACATGTACTCATCTTGTAATTATCCAGCTTCTGCAAGGTTAGTTCTTGATTCTGCTCCACGATGGGCCTCTGACGTAGTTTCTTGGAACACAATCATTGCTGGATACATACGAGGTGGTATGCCTAATAAGGCGTTGCAATCTTTTCACCAAATGGCCAAAGAGCAAGTTAGGCTGGACGAGGTCACTCTGTTAAATGTGCTGGTTGCTTGTGCAAGGACAGGCGCAATGAAGGTTGGGAGCCTTTGTCATGCTCTAGTTGTGCTGAATGGGTTTGAGATAAATTGTTATATTGGATCCTCTTTGGTTAGTATGTATGCAAAGTGTGGTATGGTTGAGGAAGCTCGCAGGGTTTTTAAT GAATG ] [+] EMBL AU056444 [ tTTGACNTGGGCCGGTATCTCNATGCTTATTGTGATGGTCATGGTTTAGGGAAAGAGCTTTCTGTGAAAAATTCGTTGATTGATATGTANTCGAAGTGCGGGGATGTAAACAAGGCCTATCAGATATTTCATGGATTGACAAAGCGGGATGTGTTTACTTGGACAGTNATGATAATGGGCTTTGCTAaaaaaaa ] [-] EMBL CB629299 [ GCGGGATGTGTTTACTTGGACAGTAATGATAATGGGCTTTGCTATGAATGGTCTCTGCGTTGAGGCACTAGATTTGTTTGCACAGATGGAAGGAGAAGATAAGGTTATGCCGAATGAGGTCATTTTTTTGGGTGTGCTAACTGCTTGCAGCCATGGAGGTTTAGTGGAACAGGGGTACCATCACTTCCATCGCATGTCCAAGGTCTACAACCTTGTGCCAAGAATCGAACACTATGGATGCATGGTCGACCTTTTGGGACGTGCCAAGCTGTTGGCAGAGGCAGAGCAATTCATTAAAGATATGCCTGTCGCTCCTGATGTGGTAGTATGGCGGTCATTGTTGTTTGCCTGTAGAGCTTCTGGACAAGTGGGGCTTGCAGAATATGCAGCAGAAAGAATTGAACAGTTGGAACCAAAAAGGTGTGGAGGGCATGTTTTACTCTCTAATGTATATGCTACCACATCAAGATGGGTTGATGTGAATAATGTGCGGACAGGGATGGGCAATAGTAGGACAAGTAAGAAGCCCGGTTGCTCTTTCATTGAAGTCGATGGCTGCATACATGAATTCTTTGCGGGAGATGAGTCTCATTTTGAGACAGAAGCTATATGCAACACTCTTTTTGGGATCAATGAGCTACTAGTGGCGGAGTCCTTCCTAATGTAAAAGCTTAGGAGTTCCATATCAACCAAATATATCCATTTCAAATGTACAATGCTGTGGTTTTTTTTTTTATCAGCTTAGTGGAATGATGAAATTGAAAATTTGTCTTTAAAAAAAATAAGGA] consensusID : consensus_7850#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 210 fasta sequence [GGNCGGNACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGCGGATTCTCAATGGGAAGACACGNNATTTCTCCACTNTCAGAAGCTCGNACACTGAAAACAAATGTATCCTCTNTGTCCCGGTCTCATCTCTCTCACACCATCATCTCCCCATTCTCCTCTCCCGAGCAACCGTCTCGGGTCTTCTCCTTAAGCTACC] [+] EMBL AU162687 [GGNCGGNACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGCGGATTCTCAATGGGAAGACACGNNATTTCTCCACTNTCAGAAGCTCGNACACTGAAAACAAATGTATCCTCTNTGTCCCGGTCTCATCTCTCTCACACCATCATCTCCCCATTCTCCTCTCCCGAGCAACCGTCTCGGGTCTTCTCCTTAAGCTACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7850#0 TTCTTCTTCCTTCCACAAAAGCAAGAGGTTCCCCGGAGAGCGCGCCGCCGGCGACAAGGA 60 consensus_7850#1 ------------------------------------------------------------ consensus_7850#0 CGACGAGCCGCCTCCCCGAATCGCGACCCCGCCCTATCCTCCTCCTCCTCCTCTGTGCGG 120 consensus_7850#1 ------------------------------------------------------------ consensus_7850#0 CCTGCCCCCCTCGCGCGCACGGCCGGGCCGGCGAGGGGTTGACGTGACGCGGCCGGTCGA 180 consensus_7850#1 ------------------------------------------------------------ consensus_7850#0 CCTCCTCCTCCGTCTGCAAGGTTTTGATGTCGGACAACAGTTTACGATATTCCAATAATA 240 consensus_7850#1 ------------------------------------------------------------ consensus_7850#0 TCTTAGCTGCAGTATAACACCACTGCCCCCATTCTGTTGCCCTCAAATCAGCTCCATTTA 300 consensus_7850#1 -------------------------------GGNCGGNACGCGTGGGCGGACGCGTGGGC 29 * * * * * consensus_7850#0 GAGTGTTTAAATGTGCTTATCTTCTCGGATTCTCAATGGGAAGACACGATATTTCTCCAC 360 consensus_7850#1 GGACGCGTGGGCGGACGCGTGGGC--GGATTCTCAATGGGAAGACACGNNATTTCTCCAC 87 * * * * * * * ********************** ********** consensus_7850#0 TCTCAGAAGCTCGCACACTGAAAACAAATGTATCCTCTCTGTCCCGGTCTCATCTCTCTC 420 consensus_7850#1 TNTCAGAAGCTCGNACACTGAAAACAAATGTATCCTCTNTGTCCCGGTCTCATCTCTCTC 147 * *********** ************************ ********************* consensus_7850#0 ACACCATCATCTCCCCATTCTCCTCTCCCGAGCAACCGTCTCGGGTCTTCTCCTTAAGCT 480 consensus_7850#1 ACACCATCATCTCCCCATTCTCCTCTCCCGAGCAACCGTCTCGGGTCTTCTCCTTAAGCT 207 ************************************************************ consensus_7850#0 ACCGCTGGTCCACTCTGTCCTCCGTTCCCTCTATTTGGGGCCTATCCCATCACTCTCTTT 540 consensus_7850#1 ACC--------------------------------------------------------- 210 *** consensus_7850#0 CTCCTTCCTCTCCCTACTTCGCCGTTTTGCCAACATGACACTTGATAACTACTCCCTCAA 600 consensus_7850#1 ------------------------------------------------------------ consensus_7850#0 CATTGCCATCTCTGCTGCCGCTCGCGTCCCATCACTTGATGTTGGCTCCCAGTTTCATGC 660 consensus_7850#1 ------------------------------------------------------------ consensus_7850#0 CCTTTCTTTGAAACTCAGCCTAGCTTCAGATTCATTTGTCCTTAATGCCCTTATCAACAT 720 consensus_7850#1 ------------------------------------------------------------ consensus_7850#0 GTACTCATCTTGTAATTATCCAGCTTCTGCAAGGTTAGTTCTTGATTCTGCTCCACGATG 780 consensus_7850#1 ------------------------------------------------------------ consensus_7850#0 GGCCTCTGACGTAGTTTCTTGGAACACAATCATTGCTGGATACATACGAGGTGGTATGCC 840 consensus_7850#1 ------------------------------------------------------------ consensus_7850#0 TAATAAGGCGTTGCAATCTTTTCACCAAATGGCCAAAGAGCAAGTTAGGCTGGACGAGGT 900 consensus_7850#1 ------------------------------------------------------------ consensus_7850#0 CACTCTGTTAAATGTGCTGGTTGCTTGTGCAAGGACAGGCGCAATGAAGGTTGGGAGCCT 960 consensus_7850#1 ------------------------------------------------------------ consensus_7850#0 TTGTCATGCTCTAGTTGTGCTGAATGGGTTTGAGATAAATTGTTATATTGGATCCTCTTT 1020 consensus_7850#1 ------------------------------------------------------------ consensus_7850#0 GGTTAGTATGTATGCAAAGTGTGGTATGGTTGAGGAAGCTCGCAGGGTTTTTAATAGAAT 1080 consensus_7850#1 ------------------------------------------------------------ consensus_7850#0 GCCTGAAAGGAATGTAGTTTGCTGGACCTCAATGATTGCTGGATGTACACAATCTGGTAG 1140 consensus_7850#1 ------------------------------------------------------------ consensus_7850#0 GTTTAAAGAGGCTGTTGATCTGTTTAGGGACATGCAAATTGCTGGTGTGAAGGCTGATGA 1200 consensus_7850#1 ------------------------------------------------------------ consensus_7850#0 CGCTACAATTGCTACTGTTGTATCATCATGTGGCCAGATGGGAGCACTTGACTTGGGACG 1260 consensus_7850#1 ------------------------------------------------------------ consensus_7850#0 GTATCTCCATGCTTATTGTGATGGTCATGGTTTAGGGAAAGAGCTTTCTGTGAAAAATTC 1320 consensus_7850#1 ------------------------------------------------------------ consensus_7850#0 GTTGATTGATATGTACTCGAAGTGCGGGGATGTAAACAAGGCCTATCAGATATTTCATGG 1380 consensus_7850#1 ------------------------------------------------------------ consensus_7850#0 ATTGACAAAGCGGGATGTGTTTACTTGGACAGTAATGATAATGGGCTTTGCTATGAATGG 1440 consensus_7850#1 ------------------------------------------------------------ consensus_7850#0 TCTCTGCGTTGAGGCACTAGATTTGTTTGCACAGATGGAAGGAGAAGATAAGGTTATGCC 1500 consensus_7850#1 ------------------------------------------------------------ consensus_7850#0 GAATGAGGTCATTTTTTTGGGTGTGCTAACTGCTTGCAGCCATGGAGGTTTAGTGGAACA 1560 consensus_7850#1 ------------------------------------------------------------ consensus_7850#0 GGGGTACCATCACTTCCATCGCATGTCCAAGGTCTACAACCTTGTGCCAAGAATCGAACA 1620 consensus_7850#1 ------------------------------------------------------------ consensus_7850#0 CTATGGATGCATGGTCGACCTTTTGGGACGTGCCAAGCTGTTGGCAGAGGCAGAGCAATT 1680 consensus_7850#1 ------------------------------------------------------------ consensus_7850#0 CATTAAAGATATGCCTGTCGCTCCTGATGTGGTAGTATGGCGGTCATTGTTGTTTGCCTG 1740 consensus_7850#1 ------------------------------------------------------------ consensus_7850#0 TAGAGCTTCTGGACAAGTGGGGCTTGCAGAATATGCAGCAGAAAGAATTGAACAGTTGGA 1800 consensus_7850#1 ------------------------------------------------------------ consensus_7850#0 ACCAAAAAGGTGTGGAGGGCATGTTTTACTCTCTAATGTATATGCTACCACATTAAGATG 1860 consensus_7850#1 ------------------------------------------------------------ consensus_7850#0 GGTTGATGTGAATAATGTGCGGACAGGGATGGGCAATAGTAGGACAAGTAAGAAGCCCGG 1920 consensus_7850#1 ------------------------------------------------------------ consensus_7850#0 TTGCTCTTTCATTGAAGTCGATGGCTGCATACATGAATTCTTTGCGGGAGATGAGTCTCA 1980 consensus_7850#1 ------------------------------------------------------------ consensus_7850#0 TTTTGAGACAGAAGCTATATGCAACACTCTTTTTGGGATCAATGAGCTACTAGTGGCGGA 2040 consensus_7850#1 ------------------------------------------------------------ consensus_7850#0 GTCCTTCCTAATGTAAAAGCTTAGGAGTTCCATATCAACCAAATATATCCATTTCAAATG 2100 consensus_7850#1 ------------------------------------------------------------ consensus_7850#0 TACAATGCTGTGGTTTTTTTTATCAGCTTATGGAATGATGAAATTGAAAATTTGTCTTTA 2160 consensus_7850#1 ------------------------------------------------------------ consensus_7850#0 AAAAAAATAAGGA 2173 consensus_7850#1 ------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||