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Oryza sativa
cluster # 7860 cluster # 7860       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7860#0 length = 1400 sequences # 4  
consensus_7860#1 length = 145 sequences # 1  

consensusID : consensus_7860#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1400
fasta sequence
                              [TGCATGTATTAAACACAAAAGGCCACAGAGAAAGCCACCGAAATTGAGGCTATATAAGCTCACATCCACCTCACCCCAACCAAAGAGAAGATTTCATCAGTTCAGTTCAGACAGCTCTCCTCTCCTCACACTCAGCTTCACTCTCTTCCAAAACCCACACTAACCCAAGTCTCCAAGAAGGCAAGAGTCGCCGTCGCCGTCGCCGCCGGCCACGCCGTGTGCTAGCTAGCTAGAGCTGTGCACGATACAGTGTGCTGCGACCATGGCGGCCGCCGGAGCAGCGTTGCGGCTGCGCCTCCTCTACCGGATGCTGCGGGTGGGCGAGCTCCTCGCGCTCGTGGTGTTCTTGTCGTGGTCTTCTTCCCGCGTGCCGGCCGCCGCCGCCGCCGTGGTGCGGCTCGCCGGGTCGCTCCTGCTCAACGCCCGGTTCGTGTTCGTCCTCGGCAACGCCATCGTGCTCCTGCTCCTCGCGCTCTCCAGGCACGACCTCTCCATCTCTTCCAACCACGGCACCACCACCACCGCCGCCGCCGCCGCCGTCTCCAGCGACAGCGCTGGCGCCGGGTCCACGCCAGCGTCGACGACAGCGCCACCCGCCGCCAGCTTCCCTCTGTTCATCGTCCCGCAGCCATCACCGCCGCCGCCTCACGCCACCG-AGG-CCCCGGTGGTGGCAGCGCCTCCGGCGCCCGTGGTCCCCTGCGCCCCGTCGGTGGCGCCGGCAGCGCCGGCGGCGGCGGCGGCGTTCGAGGACAAGCAGGCGGTGCGCGTCAACAAGGCACGCGCGCCGAGGCGGAGCAGGTCGGAGAAGATGGGCTCGCGCGGCGCGTTCCGGCGGGCGGTGTCGCCGGAGCTGCGGCGGTCGGAGTCGGACAACGGGCGCAGGCGGCGGTCGTCGGTGACGGCGCGCGACGCGGAGGTGTGCTGGGGCGCGGACGACGCGGAGGAGTTCCGGCGGACGGTGGAGGCGTCCATCGCCAAGCAAACGAGGTTCCACCGCGAGGAGTCGATGACCATGACCATGTCCATCGTCGCCGGCGTCGGCCACGGCGAGGTGGCGCCGGCCATCGCCGGAGCACTCGCAGTCGTGGAATAAGTTGGCCTCACATGTCAGTGGAGAAAAAGAAAAAAAATCCCTGTGAAAAAGTACATAAAATGGAGAATTGAAGCTCTCCTTGGCTACATCTTGTGTGCACGTTTTGCCTTGCCTTGTTCTTGTTCCTGGCCTCCCTACTCTTTTTTTTTCGTTTGCACGATCATCGAGGTTTTACAGCCGTTGGATGGTGGATCCGACGGTGGTAACAGCGTTGGATGAAAATCTGAGGGGGTACTTTCGGGAGAGAGGGGCTAAACTCTCCCAAACACCCCCTGAAGCTGTTGGTTGCGAGATGGTTCTACTATTT]

[-] EMBL AK110257             [TGCATGTATTAAACACAAAAGGCCACAGAGAAAGCCACCGAAATTGAGGCTATATAAGCTCACATCCACCTCACCCCAACCAAAGAGAAGATTTCATCAGTTCAGTTCAGACAGCTCTCCTCTCCTCACACTCAGCTTCACTCTCTTCCAAAACCCACACTAACCCAAGTCTCCAAGAAGGCAAGAGTCGCCGTCGCCGTCGCCGCCGGCCACGCCGTGTGCTAGCTAGCTAGAGCTGTGCACGATACAGTGTGCTGCGACCATGGCGGCCGCCGGAGCAGCGTTGCGGCTGCGCCTCCTCTACCGGATGCTGCGGGTGGGCGAGCTCCTCGCGCTCGTGGTGTTCTTGTCGTGGTCTTCTTCCCGCGTGCCGGCCGCCGCCGCCGCCGTGGTGCGGCTCGCCGGGTCGCTCCTGCTCAACGCCCGGTTCGTGTTCGTCCTCGGCAACGCCATCGTGCTCCTGCTCCTCGCGCTCTCCAGGCACGACCTCTCCATCTCTTCCAACCACGGCACCACCACCACCGCCGCCGCCGCCGCCGTCTCCAGCGACAGCGCTGGCGCCGGGTCCACGCCAGCGTCGACGACAGCGCCACCCGCCGCCAGCTTCCCTCTGTTCATCGTCCCGCAGCCATCACCGCCGCCGCCTCACGCCACCG AGG CCCCGGTGGTGGCAGCGCCTCCGGCGCCCGTGGTCCCCTGCGCCCCGTCGGTGGCGCCGGCAGCGCCGGCGGCGGCGGCGGCGTTCGAGGACAAGCAGGCGGTGCGCGTCAACAAGGCACGCGCGCCGAGGCGGAGCAGGTCGGAGAAGATGGGCTCGCGCGGCGCGTTCCGGCGGGCGGTGTCGCCGGAGCTGCGGCGGTCGGAGTCGGACAACGGGCGCAGGCGGCGGTCGTCGGTGACGGCGCGCGACGCGGAGGTGTGCTGGGGCGCGGACGACGCGGAGGAGTTCCGGCGGACGGTGGAGGCGTCCATCGCCAAGCAAACGAGGTTCCACCGCGAGGAGTCGATGACCATGACCATGTCCATCGTCGCCGGCGTCGGCCACGGCGAGGTGGCGCCGGCCATCGCCGGAGCACTCGCAGTCGTGGAATAAGTTGGCCTCACATGTCAGTGGAGAAAAAGAAAAAAAATCCCTGTGAAAAAGT                                                                                                                                                                                                                                                               ]
[+] EMBL CA754860             [                                                                                                                 GCTCTCCTCTCCTCACACTCAGCTTCACTCTCTTCCAAAACCCACACTAACCCAAGTCTCCAAGAAGGCAAGAGTCGCCGTCGCCGTCGCCGCCGGCCACGCCGTGTGCTAGCTAGCTAGAGCTGTGCACGATACAGTGTGCTGCGACCATGGCGGCCGCCGGAGCAGCGTTGCGGCTGCGCCTCCTCTACCGGATGCTGCGGGTGGGCGAGCTCCTCGCGCTCGTGGTGTTCTTGTCGTGGTCTTCTTCCCGCGTGCCGGCCGCCGCCGCCGCCGTGGTGCGGCTCGCCGGGTCGCTCCTGCTCAACGCCCGGTTCGTGTTCGTCCTCGGCAACGCCATCGTGCTCCTGCTCCTCGCGCTCTCCAGGCACGACCTCTCCATCTCTTCCAACCACGGNACCACCACCACCGCCGCCGCCGCCGCCGTCTCCAGCGACAGCGCTGGCGCCGGGTCCACGCCAGCGTCGACGACAGCGCCACCCGCCGCCAGCTTCCCTCTGTTCATCGTCCCGCAGCCATCACCGCCGCCGCCTCACGCCACCGAAGGCCCCCGGTGGTGGCAGCGCCTCCGGCGCCCGTGGTCCCCTGCGCCCCGTCGGTGGCGCCGGCAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CA754808             [                                                                                                                 GCTCTCCTCTCCTCACACTCAGCTTCACTCTCTTCCAAAACCCACACTAACCCAAGTCTCCAAGAAGGCAAGAGTCGCCGTCGCCGTCGCCGCCGGCCACGCCGTGTGCTAGCTAGCTAGAGCTGTGCACGATACAGTGTGCTGCGACCATGGCGGCCGCCGGAGCAGCGTTGCGGCTGCGCCTCCTCTACCGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AK108181             [                                                                                                                         CTCCTCACACTCAGCTTCACTCTCTTCCAAAACCCACACTAACCCAAGTCTCCAAGAAGGCAAGAGTCGCCGTCGCCGTCGCCGCCGGCCACGCCGTGTGCTAGCTAGCTAGAGCTGTGCACGATACAGTGTGCTGCGACCATGGCGGCCGCCGGAGCAGCGTTGCGGCTGCGCCTCCTCTACCGGATGCTGCGGGTGGGCGAGCTCCTCGCGCTCGTGGTGTTCTTGTCGTGGTCTTCTTCCCGCGTGCCGGCCGCCGCCGCCGCCGTGGTGCGGCTCGCCGGGTCGCTCCTGCTCAACGCCCGGTTCGTGTTCGTCCTCGGCAACGCCATCGTGCTCCTGCTCCTCGCGCTCTCCAGGCACGACCTCTCCATCTCTTCCAACCACGGCACCACCACCACCGCCGCCGCCGCCGCCGTCTCCAGCGACAGCGCTGGCGCCGGGTCCACGCCAGCGTCGACGACAGCGCCACCCGCCGCCAGCTTCCCTCTGTTCATCGTCCCGCAGCCATCACCGCCGCCGCCTCACGCCACCG AGG CCCCGGTGGTGGCAGCGCCTCCGGCGCCCGTGGTCCCCTGCGCCCCGTCGGTGGCGCCGGCAGCGCCGGCGGCGGCGGCGGCGTTCGAGGACAAGCAGGCGGTGCGCGTCAACAAGGCACGCGCGCCGAGGCGGAGCAGGTCGGAGAAGATGGGCTCGCGCGGCGCGTTCCGGCGGGCGGTGTCGCCGGAGCTGCGGCGGTCGGAGTCGGACAACGGGCGCAGGCGGCGGTCGTCGGTGACGGCGCGCGACGCGGAGGTGTGCTGGGGCGCGGACGACGCGGAGGAGTTCCGGCGGACGGTGGAGGCGTTCATCGCCAAGCAAACGAGGTTCCACCGCGAGGAGTCGATGACCATGACCATGTCCATCGTCGCCGGCGTCGGCCACGGCGAGGTGGCGCCGGCCATCGCCGGAGCACTCGCAGTCGTGGAATAAGTTGGCCTCACATGTCAGTGGAG AAAAGAAAAAAAATCCCTGTGAAAAAGTACATAAAATGGAGAATTGAAGCTCTCCTTGGCTACATCTTGTGTGCACGTTTTGCCTTGCCTTGTTCTTGTTCCTGGCCTCCCTACTCTTTTTTTTTCGTTTGCACGATCATCGAGGTTTTACAGCCGTTGGATGGTGGATCCGACGGTGGTAACAGCGTTGGATGAAAATCTGAGGGGGTACTTTCGGGAGAGAGGGGCTAAACTCTCCCAAACACCCCCTGAAGCTGTTGGTTGCGAGATGGTTCTACTATTT]


>consensus_7860#0 TGCATGTATTAAACACAAAAGGCCACAGAGAAAGCCACCGAAATTGAGGCTATATAAGCT CACATCCACCTCACCCCAACCAAAGAGAAGATTTCATCAGTTCAGTTCAGACAGCTCTCC TCTCCTCACACTCAGCTTCACTCTCTTCCAAAACCCACACTAACCCAAGTCTCCAAGAAG GCAAGAGTCGCCGTCGCCGTCGCCGCCGGCCACGCCGTGTGCTAGCTAGCTAGAGCTGTG CACGATACAGTGTGCTGCGACCATGGCGGCCGCCGGAGCAGCGTTGCGGCTGCGCCTCCT CTACCGGATGCTGCGGGTGGGCGAGCTCCTCGCGCTCGTGGTGTTCTTGTCGTGGTCTTC TTCCCGCGTGCCGGCCGCCGCCGCCGCCGTGGTGCGGCTCGCCGGGTCGCTCCTGCTCAA CGCCCGGTTCGTGTTCGTCCTCGGCAACGCCATCGTGCTCCTGCTCCTCGCGCTCTCCAG GCACGACCTCTCCATCTCTTCCAACCACGGCACCACCACCACCGCCGCCGCCGCCGCCGT CTCCAGCGACAGCGCTGGCGCCGGGTCCACGCCAGCGTCGACGACAGCGCCACCCGCCGC CAGCTTCCCTCTGTTCATCGTCCCGCAGCCATCACCGCCGCCGCCTCACGCCACCGAGGC CCCGGTGGTGGCAGCGCCTCCGGCGCCCGTGGTCCCCTGCGCCCCGTCGGTGGCGCCGGC AGCGCCGGCGGCGGCGGCGGCGTTCGAGGACAAGCAGGCGGTGCGCGTCAACAAGGCACG CGCGCCGAGGCGGAGCAGGTCGGAGAAGATGGGCTCGCGCGGCGCGTTCCGGCGGGCGGT GTCGCCGGAGCTGCGGCGGTCGGAGTCGGACAACGGGCGCAGGCGGCGGTCGTCGGTGAC GGCGCGCGACGCGGAGGTGTGCTGGGGCGCGGACGACGCGGAGGAGTTCCGGCGGACGGT GGAGGCGTCCATCGCCAAGCAAACGAGGTTCCACCGCGAGGAGTCGATGACCATGACCAT GTCCATCGTCGCCGGCGTCGGCCACGGCGAGGTGGCGCCGGCCATCGCCGGAGCACTCGC AGTCGTGGAATAAGTTGGCCTCACATGTCAGTGGAGAAAAAGAAAAAAAATCCCTGTGAA AAAGTACATAAAATGGAGAATTGAAGCTCTCCTTGGCTACATCTTGTGTGCACGTTTTGC CTTGCCTTGTTCTTGTTCCTGGCCTCCCTACTCTTTTTTTTTCGTTTGCACGATCATCGA GGTTTTACAGCCGTTGGATGGTGGATCCGACGGTGGTAACAGCGTTGGATGAAAATCTGA GGGGGTACTTTCGGGAGAGAGGGGCTAAACTCTCCCAAACACCCCCTGAAGCTGTTGGTT GCGAGATGGTTCTACTATTT



consensusID : consensus_7860#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 145
fasta sequence
                              [GCTCTCCTCTCCTCATACTTAGCTTCACTCTCTTCCAAAACCTACACTAACTTAAGTCTCCAAGAAGGCAAGAGTCGCCGTCGCCGTCGCCGCCGCCACTCCANGCGCTCGCTAGCTAGAGCTGTGCACGATACAATAAGATGAN]

[+] EMBL D43553               [GCTCTCCTCTCCTCATACTTAGCTTCACTCTCTTCCAAAACCTACACTAACTTAAGTCTCCAAGAAGGCAAGAGTCGCCGTCGCCGTCGCCGCCGCCACTCCANGCGCTCGCTAGCTAGAGCTGTGCACGATACAATAAGATGAN]


>consensus_7860#1 GCTCTCCTCTCCTCATACTTAGCTTCACTCTCTTCCAAAACCTACACTAACTTAAGTCTC CAAGAAGGCAAGAGTCGCCGTCGCCGTCGCCGCCGCCACTCCANGCGCTCGCTAGCTAGA GCTGTGCACGATACAATAAGATGAN



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7860#0      TGCATGTATTAAACACAAAAGGCCACAGAGAAAGCCACCGAAATTGAGGCTATATAAGCT 60
consensus_7860#1      ------------------------------------------------------------
                                                                                  

consensus_7860#0      CACATCCACCTCACCCCAACCAAAGAGAAGATTTCATCAGTTCAGTTCAGACAGCTCTCC 120
consensus_7860#1      -----------------------------------------------------GCTCTCC 7
                                                                           *******

consensus_7860#0      TCTCCTCACACTCAGCTTCACTCTCTTCCAAAACCCACACTAACCCAAGTCTCCAAGAAG 180
consensus_7860#1      TCTCCTCATACTTAGCTTCACTCTCTTCCAAAACCTACACTAACTTAAGTCTCCAAGAAG 67
                      ******** *** ********************** ********  **************

consensus_7860#0      GCAAGAGTCGCCGTCGCCGTCGCCGCCGGCCACGCCGTGTGCTAGCTAGCTAGAGCTGTG 240
consensus_7860#1      GCAAGAGTCGCCGTCGCCGTCGCCGCCG-CCACTCCANGCGCTCGCTAGCTAGAGCTGTG 126
                      **************************** **** **  * *** ****************

consensus_7860#0      CACGATACAGTGTGCTGCGACCATGGCGGCCGCCGGAGCAGCGTTGCGGCTGCGCCTCCT 300
consensus_7860#1      CACGATACAATAAGATGAN----------------------------------------- 145
                      ********* *  * **                                           

consensus_7860#0      CTACCGGATGCTGCGGGTGGGCGAGCTCCTCGCGCTCGTGGTGTTCTTGTCGTGGTCTTC 360
consensus_7860#1      ------------------------------------------------------------
                                                                                  

consensus_7860#0      TTCCCGCGTGCCGGCCGCCGCCGCCGCCGTGGTGCGGCTCGCCGGGTCGCTCCTGCTCAA 420
consensus_7860#1      ------------------------------------------------------------
                                                                                  

consensus_7860#0      CGCCCGGTTCGTGTTCGTCCTCGGCAACGCCATCGTGCTCCTGCTCCTCGCGCTCTCCAG 480
consensus_7860#1      ------------------------------------------------------------
                                                                                  

consensus_7860#0      GCACGACCTCTCCATCTCTTCCAACCACGGCACCACCACCACCGCCGCCGCCGCCGCCGT 540
consensus_7860#1      ------------------------------------------------------------
                                                                                  

consensus_7860#0      CTCCAGCGACAGCGCTGGCGCCGGGTCCACGCCAGCGTCGACGACAGCGCCACCCGCCGC 600
consensus_7860#1      ------------------------------------------------------------
                                                                                  

consensus_7860#0      CAGCTTCCCTCTGTTCATCGTCCCGCAGCCATCACCGCCGCCGCCTCACGCCACCGAGGC 660
consensus_7860#1      ------------------------------------------------------------
                                                                                  

consensus_7860#0      CCCGGTGGTGGCAGCGCCTCCGGCGCCCGTGGTCCCCTGCGCCCCGTCGGTGGCGCCGGC 720
consensus_7860#1      ------------------------------------------------------------
                                                                                  

consensus_7860#0      AGCGCCGGCGGCGGCGGCGGCGTTCGAGGACAAGCAGGCGGTGCGCGTCAACAAGGCACG 780
consensus_7860#1      ------------------------------------------------------------
                                                                                  

consensus_7860#0      CGCGCCGAGGCGGAGCAGGTCGGAGAAGATGGGCTCGCGCGGCGCGTTCCGGCGGGCGGT 840
consensus_7860#1      ------------------------------------------------------------
                                                                                  

consensus_7860#0      GTCGCCGGAGCTGCGGCGGTCGGAGTCGGACAACGGGCGCAGGCGGCGGTCGTCGGTGAC 900
consensus_7860#1      ------------------------------------------------------------
                                                                                  

consensus_7860#0      GGCGCGCGACGCGGAGGTGTGCTGGGGCGCGGACGACGCGGAGGAGTTCCGGCGGACGGT 960
consensus_7860#1      ------------------------------------------------------------
                                                                                  

consensus_7860#0      GGAGGCGTCCATCGCCAAGCAAACGAGGTTCCACCGCGAGGAGTCGATGACCATGACCAT 1020
consensus_7860#1      ------------------------------------------------------------
                                                                                  

consensus_7860#0      GTCCATCGTCGCCGGCGTCGGCCACGGCGAGGTGGCGCCGGCCATCGCCGGAGCACTCGC 1080
consensus_7860#1      ------------------------------------------------------------
                                                                                  

consensus_7860#0      AGTCGTGGAATAAGTTGGCCTCACATGTCAGTGGAGAAAAAGAAAAAAAATCCCTGTGAA 1140
consensus_7860#1      ------------------------------------------------------------
                                                                                  

consensus_7860#0      AAAGTACATAAAATGGAGAATTGAAGCTCTCCTTGGCTACATCTTGTGTGCACGTTTTGC 1200
consensus_7860#1      ------------------------------------------------------------
                                                                                  

consensus_7860#0      CTTGCCTTGTTCTTGTTCCTGGCCTCCCTACTCTTTTTTTTTCGTTTGCACGATCATCGA 1260
consensus_7860#1      ------------------------------------------------------------
                                                                                  

consensus_7860#0      GGTTTTACAGCCGTTGGATGGTGGATCCGACGGTGGTAACAGCGTTGGATGAAAATCTGA 1320
consensus_7860#1      ------------------------------------------------------------
                                                                                  

consensus_7860#0      GGGGGTACTTTCGGGAGAGAGGGGCTAAACTCTCCCAAACACCCCCTGAAGCTGTTGGTT 1380
consensus_7860#1      ------------------------------------------------------------
                                                                                  

consensus_7860#0      GCGAGATGGTTCTACTATTT 1400
consensus_7860#1      --------------------
                                          




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)