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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7860#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1400 fasta sequence
[TGCATGTATTAAACACAAAAGGCCACAGAGAAAGCCACCGAAATTGAGGCTATATAAGCTCACATCCACCTCACCCCAACCAAAGAGAAGATTTCATCAGTTCAGTTCAGACAGCTCTCCTCTCCTCACACTCAGCTTCACTCTCTTCCAAAACCCACACTAACCCAAGTCTCCAAGAAGGCAAGAGTCGCCGTCGCCGTCGCCGCCGGCCACGCCGTGTGCTAGCTAGCTAGAGCTGTGCACGATACAGTGTGCTGCGACCATGGCGGCCGCCGGAGCAGCGTTGCGGCTGCGCCTCCTCTACCGGATGCTGCGGGTGGGCGAGCTCCTCGCGCTCGTGGTGTTCTTGTCGTGGTCTTCTTCCCGCGTGCCGGCCGCCGCCGCCGCCGTGGTGCGGCTCGCCGGGTCGCTCCTGCTCAACGCCCGGTTCGTGTTCGTCCTCGGCAACGCCATCGTGCTCCTGCTCCTCGCGCTCTCCAGGCACGACCTCTCCATCTCTTCCAACCACGGCACCACCACCACCGCCGCCGCCGCCGCCGTCTCCAGCGACAGCGCTGGCGCCGGGTCCACGCCAGCGTCGACGACAGCGCCACCCGCCGCCAGCTTCCCTCTGTTCATCGTCCCGCAGCCATCACCGCCGCCGCCTCACGCCACCG-AGG-CCCCGGTGGTGGCAGCGCCTCCGGCGCCCGTGGTCCCCTGCGCCCCGTCGGTGGCGCCGGCAGCGCCGGCGGCGGCGGCGGCGTTCGAGGACAAGCAGGCGGTGCGCGTCAACAAGGCACGCGCGCCGAGGCGGAGCAGGTCGGAGAAGATGGGCTCGCGCGGCGCGTTCCGGCGGGCGGTGTCGCCGGAGCTGCGGCGGTCGGAGTCGGACAACGGGCGCAGGCGGCGGTCGTCGGTGACGGCGCGCGACGCGGAGGTGTGCTGGGGCGCGGACGACGCGGAGGAGTTCCGGCGGACGGTGGAGGCGTCCATCGCCAAGCAAACGAGGTTCCACCGCGAGGAGTCGATGACCATGACCATGTCCATCGTCGCCGGCGTCGGCCACGGCGAGGTGGCGCCGGCCATCGCCGGAGCACTCGCAGTCGTGGAATAAGTTGGCCTCACATGTCAGTGGAGAAAAAGAAAAAAAATCCCTGTGAAAAAGTACATAAAATGGAGAATTGAAGCTCTCCTTGGCTACATCTTGTGTGCACGTTTTGCCTTGCCTTGTTCTTGTTCCTGGCCTCCCTACTCTTTTTTTTTCGTTTGCACGATCATCGAGGTTTTACAGCCGTTGGATGGTGGATCCGACGGTGGTAACAGCGTTGGATGAAAATCTGAGGGGGTACTTTCGGGAGAGAGGGGCTAAACTCTCCCAAACACCCCCTGAAGCTGTTGGTTGCGAGATGGTTCTACTATTT]
[-] EMBL AK110257 [TGCATGTATTAAACACAAAAGGCCACAGAGAAAGCCACCGAAATTGAGGCTATATAAGCTCACATCCACCTCACCCCAACCAAAGAGAAGATTTCATCAGTTCAGTTCAGACAGCTCTCCTCTCCTCACACTCAGCTTCACTCTCTTCCAAAACCCACACTAACCCAAGTCTCCAAGAAGGCAAGAGTCGCCGTCGCCGTCGCCGCCGGCCACGCCGTGTGCTAGCTAGCTAGAGCTGTGCACGATACAGTGTGCTGCGACCATGGCGGCCGCCGGAGCAGCGTTGCGGCTGCGCCTCCTCTACCGGATGCTGCGGGTGGGCGAGCTCCTCGCGCTCGTGGTGTTCTTGTCGTGGTCTTCTTCCCGCGTGCCGGCCGCCGCCGCCGCCGTGGTGCGGCTCGCCGGGTCGCTCCTGCTCAACGCCCGGTTCGTGTTCGTCCTCGGCAACGCCATCGTGCTCCTGCTCCTCGCGCTCTCCAGGCACGACCTCTCCATCTCTTCCAACCACGGCACCACCACCACCGCCGCCGCCGCCGCCGTCTCCAGCGACAGCGCTGGCGCCGGGTCCACGCCAGCGTCGACGACAGCGCCACCCGCCGCCAGCTTCCCTCTGTTCATCGTCCCGCAGCCATCACCGCCGCCGCCTCACGCCACCG AGG CCCCGGTGGTGGCAGCGCCTCCGGCGCCCGTGGTCCCCTGCGCCCCGTCGGTGGCGCCGGCAGCGCCGGCGGCGGCGGCGGCGTTCGAGGACAAGCAGGCGGTGCGCGTCAACAAGGCACGCGCGCCGAGGCGGAGCAGGTCGGAGAAGATGGGCTCGCGCGGCGCGTTCCGGCGGGCGGTGTCGCCGGAGCTGCGGCGGTCGGAGTCGGACAACGGGCGCAGGCGGCGGTCGTCGGTGACGGCGCGCGACGCGGAGGTGTGCTGGGGCGCGGACGACGCGGAGGAGTTCCGGCGGACGGTGGAGGCGTCCATCGCCAAGCAAACGAGGTTCCACCGCGAGGAGTCGATGACCATGACCATGTCCATCGTCGCCGGCGTCGGCCACGGCGAGGTGGCGCCGGCCATCGCCGGAGCACTCGCAGTCGTGGAATAAGTTGGCCTCACATGTCAGTGGAGAAAAAGAAAAAAAATCCCTGTGAAAAAGT ]
[+] EMBL CA754860 [ GCTCTCCTCTCCTCACACTCAGCTTCACTCTCTTCCAAAACCCACACTAACCCAAGTCTCCAAGAAGGCAAGAGTCGCCGTCGCCGTCGCCGCCGGCCACGCCGTGTGCTAGCTAGCTAGAGCTGTGCACGATACAGTGTGCTGCGACCATGGCGGCCGCCGGAGCAGCGTTGCGGCTGCGCCTCCTCTACCGGATGCTGCGGGTGGGCGAGCTCCTCGCGCTCGTGGTGTTCTTGTCGTGGTCTTCTTCCCGCGTGCCGGCCGCCGCCGCCGCCGTGGTGCGGCTCGCCGGGTCGCTCCTGCTCAACGCCCGGTTCGTGTTCGTCCTCGGCAACGCCATCGTGCTCCTGCTCCTCGCGCTCTCCAGGCACGACCTCTCCATCTCTTCCAACCACGGNACCACCACCACCGCCGCCGCCGCCGCCGTCTCCAGCGACAGCGCTGGCGCCGGGTCCACGCCAGCGTCGACGACAGCGCCACCCGCCGCCAGCTTCCCTCTGTTCATCGTCCCGCAGCCATCACCGCCGCCGCCTCACGCCACCGAAGGCCCCCGGTGGTGGCAGCGCCTCCGGCGCCCGTGGTCCCCTGCGCCCCGTCGGTGGCGCCGGCAG ]
[+] EMBL CA754808 [ GCTCTCCTCTCCTCACACTCAGCTTCACTCTCTTCCAAAACCCACACTAACCCAAGTCTCCAAGAAGGCAAGAGTCGCCGTCGCCGTCGCCGCCGGCCACGCCGTGTGCTAGCTAGCTAGAGCTGTGCACGATACAGTGTGCTGCGACCATGGCGGCCGCCGGAGCAGCGTTGCGGCTGCGCCTCCTCTACCGG ]
[+] EMBL AK108181 [ CTCCTCACACTCAGCTTCACTCTCTTCCAAAACCCACACTAACCCAAGTCTCCAAGAAGGCAAGAGTCGCCGTCGCCGTCGCCGCCGGCCACGCCGTGTGCTAGCTAGCTAGAGCTGTGCACGATACAGTGTGCTGCGACCATGGCGGCCGCCGGAGCAGCGTTGCGGCTGCGCCTCCTCTACCGGATGCTGCGGGTGGGCGAGCTCCTCGCGCTCGTGGTGTTCTTGTCGTGGTCTTCTTCCCGCGTGCCGGCCGCCGCCGCCGCCGTGGTGCGGCTCGCCGGGTCGCTCCTGCTCAACGCCCGGTTCGTGTTCGTCCTCGGCAACGCCATCGTGCTCCTGCTCCTCGCGCTCTCCAGGCACGACCTCTCCATCTCTTCCAACCACGGCACCACCACCACCGCCGCCGCCGCCGCCGTCTCCAGCGACAGCGCTGGCGCCGGGTCCACGCCAGCGTCGACGACAGCGCCACCCGCCGCCAGCTTCCCTCTGTTCATCGTCCCGCAGCCATCACCGCCGCCGCCTCACGCCACCG AGG CCCCGGTGGTGGCAGCGCCTCCGGCGCCCGTGGTCCCCTGCGCCCCGTCGGTGGCGCCGGCAGCGCCGGCGGCGGCGGCGGCGTTCGAGGACAAGCAGGCGGTGCGCGTCAACAAGGCACGCGCGCCGAGGCGGAGCAGGTCGGAGAAGATGGGCTCGCGCGGCGCGTTCCGGCGGGCGGTGTCGCCGGAGCTGCGGCGGTCGGAGTCGGACAACGGGCGCAGGCGGCGGTCGTCGGTGACGGCGCGCGACGCGGAGGTGTGCTGGGGCGCGGACGACGCGGAGGAGTTCCGGCGGACGGTGGAGGCGTTCATCGCCAAGCAAACGAGGTTCCACCGCGAGGAGTCGATGACCATGACCATGTCCATCGTCGCCGGCGTCGGCCACGGCGAGGTGGCGCCGGCCATCGCCGGAGCACTCGCAGTCGTGGAATAAGTTGGCCTCACATGTCAGTGGAG AAAAGAAAAAAAATCCCTGTGAAAAAGTACATAAAATGGAGAATTGAAGCTCTCCTTGGCTACATCTTGTGTGCACGTTTTGCCTTGCCTTGTTCTTGTTCCTGGCCTCCCTACTCTTTTTTTTTCGTTTGCACGATCATCGAGGTTTTACAGCCGTTGGATGGTGGATCCGACGGTGGTAACAGCGTTGGATGAAAATCTGAGGGGGTACTTTCGGGAGAGAGGGGCTAAACTCTCCCAAACACCCCCTGAAGCTGTTGGTTGCGAGATGGTTCTACTATTT]
consensusID : consensus_7860#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 145 fasta sequence
[GCTCTCCTCTCCTCATACTTAGCTTCACTCTCTTCCAAAACCTACACTAACTTAAGTCTCCAAGAAGGCAAGAGTCGCCGTCGCCGTCGCCGCCGCCACTCCANGCGCTCGCTAGCTAGAGCTGTGCACGATACAATAAGATGAN]
[+] EMBL D43553 [GCTCTCCTCTCCTCATACTTAGCTTCACTCTCTTCCAAAACCTACACTAACTTAAGTCTCCAAGAAGGCAAGAGTCGCCGTCGCCGTCGCCGCCGCCACTCCANGCGCTCGCTAGCTAGAGCTGTGCACGATACAATAAGATGAN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7860#0 TGCATGTATTAAACACAAAAGGCCACAGAGAAAGCCACCGAAATTGAGGCTATATAAGCT 60
consensus_7860#1 ------------------------------------------------------------
consensus_7860#0 CACATCCACCTCACCCCAACCAAAGAGAAGATTTCATCAGTTCAGTTCAGACAGCTCTCC 120
consensus_7860#1 -----------------------------------------------------GCTCTCC 7
*******
consensus_7860#0 TCTCCTCACACTCAGCTTCACTCTCTTCCAAAACCCACACTAACCCAAGTCTCCAAGAAG 180
consensus_7860#1 TCTCCTCATACTTAGCTTCACTCTCTTCCAAAACCTACACTAACTTAAGTCTCCAAGAAG 67
******** *** ********************** ******** **************
consensus_7860#0 GCAAGAGTCGCCGTCGCCGTCGCCGCCGGCCACGCCGTGTGCTAGCTAGCTAGAGCTGTG 240
consensus_7860#1 GCAAGAGTCGCCGTCGCCGTCGCCGCCG-CCACTCCANGCGCTCGCTAGCTAGAGCTGTG 126
**************************** **** ** * *** ****************
consensus_7860#0 CACGATACAGTGTGCTGCGACCATGGCGGCCGCCGGAGCAGCGTTGCGGCTGCGCCTCCT 300
consensus_7860#1 CACGATACAATAAGATGAN----------------------------------------- 145
********* * * **
consensus_7860#0 CTACCGGATGCTGCGGGTGGGCGAGCTCCTCGCGCTCGTGGTGTTCTTGTCGTGGTCTTC 360
consensus_7860#1 ------------------------------------------------------------
consensus_7860#0 TTCCCGCGTGCCGGCCGCCGCCGCCGCCGTGGTGCGGCTCGCCGGGTCGCTCCTGCTCAA 420
consensus_7860#1 ------------------------------------------------------------
consensus_7860#0 CGCCCGGTTCGTGTTCGTCCTCGGCAACGCCATCGTGCTCCTGCTCCTCGCGCTCTCCAG 480
consensus_7860#1 ------------------------------------------------------------
consensus_7860#0 GCACGACCTCTCCATCTCTTCCAACCACGGCACCACCACCACCGCCGCCGCCGCCGCCGT 540
consensus_7860#1 ------------------------------------------------------------
consensus_7860#0 CTCCAGCGACAGCGCTGGCGCCGGGTCCACGCCAGCGTCGACGACAGCGCCACCCGCCGC 600
consensus_7860#1 ------------------------------------------------------------
consensus_7860#0 CAGCTTCCCTCTGTTCATCGTCCCGCAGCCATCACCGCCGCCGCCTCACGCCACCGAGGC 660
consensus_7860#1 ------------------------------------------------------------
consensus_7860#0 CCCGGTGGTGGCAGCGCCTCCGGCGCCCGTGGTCCCCTGCGCCCCGTCGGTGGCGCCGGC 720
consensus_7860#1 ------------------------------------------------------------
consensus_7860#0 AGCGCCGGCGGCGGCGGCGGCGTTCGAGGACAAGCAGGCGGTGCGCGTCAACAAGGCACG 780
consensus_7860#1 ------------------------------------------------------------
consensus_7860#0 CGCGCCGAGGCGGAGCAGGTCGGAGAAGATGGGCTCGCGCGGCGCGTTCCGGCGGGCGGT 840
consensus_7860#1 ------------------------------------------------------------
consensus_7860#0 GTCGCCGGAGCTGCGGCGGTCGGAGTCGGACAACGGGCGCAGGCGGCGGTCGTCGGTGAC 900
consensus_7860#1 ------------------------------------------------------------
consensus_7860#0 GGCGCGCGACGCGGAGGTGTGCTGGGGCGCGGACGACGCGGAGGAGTTCCGGCGGACGGT 960
consensus_7860#1 ------------------------------------------------------------
consensus_7860#0 GGAGGCGTCCATCGCCAAGCAAACGAGGTTCCACCGCGAGGAGTCGATGACCATGACCAT 1020
consensus_7860#1 ------------------------------------------------------------
consensus_7860#0 GTCCATCGTCGCCGGCGTCGGCCACGGCGAGGTGGCGCCGGCCATCGCCGGAGCACTCGC 1080
consensus_7860#1 ------------------------------------------------------------
consensus_7860#0 AGTCGTGGAATAAGTTGGCCTCACATGTCAGTGGAGAAAAAGAAAAAAAATCCCTGTGAA 1140
consensus_7860#1 ------------------------------------------------------------
consensus_7860#0 AAAGTACATAAAATGGAGAATTGAAGCTCTCCTTGGCTACATCTTGTGTGCACGTTTTGC 1200
consensus_7860#1 ------------------------------------------------------------
consensus_7860#0 CTTGCCTTGTTCTTGTTCCTGGCCTCCCTACTCTTTTTTTTTCGTTTGCACGATCATCGA 1260
consensus_7860#1 ------------------------------------------------------------
consensus_7860#0 GGTTTTACAGCCGTTGGATGGTGGATCCGACGGTGGTAACAGCGTTGGATGAAAATCTGA 1320
consensus_7860#1 ------------------------------------------------------------
consensus_7860#0 GGGGGTACTTTCGGGAGAGAGGGGCTAAACTCTCCCAAACACCCCCTGAAGCTGTTGGTT 1380
consensus_7860#1 ------------------------------------------------------------
consensus_7860#0 GCGAGATGGTTCTACTATTT 1400
consensus_7860#1 --------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||