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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7861#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1099 fasta sequence
[TCTCCACGGCGCGGCGAGGCAGCGGCGGAGGGATGGTGGGCTCGGCCGCGTACTCCGCGGCGTCGGCCATCGTCGTGGTGATGGCCAAGGGCAAGGGGCGGGGCGGCAGAGGCGGCCCCTCTGGCGCCAACAAGGTTTCTGAGCGACGGCCTCCTAGGATAACTTCCAATGTGAAGCAGAGCTTGAGGATTCTAAAATTTTGGAAGGATTATGAAAGGAGGCAAACAAGTGGACCTCAGCCTGCTACTCGGTACCGCAAAAAGAAAGTAATAAAAGAAGTGCTTCCTGATGACACAGACTTCTACGATGATGCTTCTTCCACTCTTCACTAGTCAGGCTTGCCTCTCATTGCATTATCAGGACCTCACTACATTTTTTGATTGGTGGTTCAATGAAATGCTGACATTGTTTTGTCAATTAATCTAGCACAAATCAGGGTTTGGAAATTGCTTCCCCGGTTATTCTTGTGGACGGTTATAATGTATGTGGCTACTGGGGAAAGCTTAAGAAGGACTTCATGAATGGAAGGCAAGAGATTGCAAGACAAATGCTCATTGATGAGCTAGTATCTTTCAGTGCAGTAAGAGGTTTGTTTGTAGTAGGAAATTAGATCCGTTACGTATGGTCTCAAGCATGATTTCCTTAAAACTCACTTATGCTGTTTACTTAAGCTGTAGCTGTTGAAGCTGATAGATGTTAGTATACTCTGATTAGATGTTAGGTACTTCTTATCTCTATTAGAGCAAACACCAGTTCAATAGTGGCTTATAGTGAAAAAGGTAGTCATGGCTTACAAATGTATCATCTTGCCAAGTGGGGAGCATAAGTAGATGATGATTTGTTTTTATCTGCCGGTGGTGCGTAATTTCTTCTCAATAGCTATCTGATGTTCTCCCATTCCAGCATTCTTATATCATTTGTCATTGTCATGCTTGCAGAGATAAAGGTTGTAGTAGTATTTGATGCTGCAGCCTCTGGGCTTTCTCACACAAAGAAACCTTAAAGGGTTTGATGTGGTATATTCTGGTGACTTGTCTGCTGATTCTTGGATTGAGAAGGAGGTAATGCTGATAAATTCTTATTCAGAACAAAGGATACC]
[+] EMBL CB673859 [TCTCCACGGCGCGGCGAGGCAGCGGCGGAGGGATGGTGGGCTCGGCCGCGTACTCCGCGGCGTCGGCCATCGTCGTGGTGATGGCCAAGGGCAAGGGGCGGGGCGGCAGAGGCGGCCCCTCTGGCGCCAACAAGGTTTCTGAGCGACGGCCTCCTAGGATAACTTCCAATGTGAAGCAGAGCTTGAGGATTCTAAAATTTTGGAAGGATTATGAAAGGAGGCAAACAAGTGGACCTCAGCCTGCTACTCGGTACCGCAAAAAGAAAGTAATAAAAGAAGTGCTTCCTGATGACACAGACTTCTACGATGATGCTTCTTCCACTCTTCACTAGTCAGGCTTGCCTCTCATTGCATTATCAGGACCTCACTACATTTTTTGATTGGTGGTTCAATGAAATGCTGACATTGTTTTGTCAATTAATCTAGCACAAATCAGGGTTTGGAAATTGCTTCCCCGGTTATTCTTGTGGACGGTTATAATGTATGTGGCTACTGGGGAAAGCTTAAGAAGGACTTCATGAATGGAAGGCAAGAGATTGCAAGACAAATGCTCATTGATGAGCTAGTATCTTTCAGTGCAGTAAGAGGTTTGTTTGTAGTAGGAAATTAGATCCGTTACGTATGGTCTCAAGCATGATTTCCTTAAAACTCACTTATGCTGTTTACTTAAGCTGTAGCTGTTGAAGCTGATAGATGTTAGTATACTCTGATTAGATGTTAGGTACTTCTTATCTCTATTAGAGCAAACACCAGTTCAATAGTGGCTTATAGTGAAAAAGGTAGTCATGGCTTACAAATGTATCATCTTGCCAAGTGGGGAGCATAAGTAGATGATGATTTGTTTTTATCTGCCGGTGGTG ]
[+] EMBL CF322555 [ AGAAGGACTTCATGAATGGAAGGCAAGAGATTGCAAGACAAATGCTCATTGATGAGCTAGTATCTTTCAGTGCAGTAAGAGGTTTGTTTGTAGTAGGAAATTAGATCCGTTACGTATGGTCTCAAGCATGATTTCCTTAAAACTCACTTATGCTGTTTACTTAAGCTGTAGCTGTTGAAGCTGATAGATGTTAGTATACTCTGATTAGATGTTAGGTACTTCTTATCTCTATTAGAGCAAACACCAGTTCAATAGTGGCTTATAGTGAAAAAGGTAGTCATGGCTTACAAATGTATCATCTTGCCAAGTGGGGAGCATAAGTAGATGATGATTTGTTTTTATCTGCCGGTGGTGCGTAATTTCTTCTCAATAGCTATCTGATGTTCTCCCATTCCAGCATTCTTATATCATTTGTCATTGTCATGCTTGCAGAGATAAAGGTTGTAGTAGTATTTGATGCTGCAGCCTCTGGGCTTTCTCACACAAAGAAACCTTAAAGGGTTTGATGTGGTATATTCTGGTGACTTGTCTGCTGATTCTTGGATTGAGAAGGAGGTAATGCTGATAAATTCTTATTCAGAACAAAGGATACC]
consensusID : consensus_7861#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 727 fasta sequence
[TGCTGCACGAGATAAAGGTTGTAGTAGTATTTGATGCTGCAGCCTCTGGGCTTTCTACACACAAAGAAACCTATAAAGGGGTTGATGTGGTATATTCTGGTGACTTGTCTGCTGATTCTTGGATTGAGAAGGAGGTTGAAGCTTTGGTGGCAGATGGATGCCCGAAAGTCTGGGTTGTAACATCTGATGCATTGGAGCAACAATTGGCACATGGAGAAGGTGCTCTTATTTGGAGCTCTAAAAGATTGGTCAAAGAGATAAAAGAATCAGAAAAGGAGCTTGATGAAGAGCTGAAGGAAACCAGATCAACATCGTTGCAAGGGAAGCTTTTTCAGCCCAAGCTGAAACCTAAAGTAGTGCATGCATTGAAAGATCTCCGGAATAAGCTTGAAGAAGAAGAGCGGAGAAAGAGGTGACTACAGTGTGACTGTATGACCTAGAGGCATGAACAAATGGCTAACAACCGCACCTGGGCATGAACAAGTTTGTAAAATGGCTGACAACCTCACTTGCTGCCTTGCATTGGATCCGTAGGGCATTGACATGATGTAAGATAGGATCTGGTTTTTTGTAAAGACCCCGTTTGGACTTCGTAGAGAGAGGCTTCAAGAGGTTAGGCATGCTTTTGCATCAGAACAATTTTGCAAGCTGCAGAGAAGAAAGGCATGAACTGTACAACAATGTAAATATCAGCAGATTCCTTTAAATCAAGCTCAACTAACGAGAT]
[-] EMBL CB673858 [TGCTGCACGAGATAAAGGTTGTAGTAGTATTTGATGCTGCAGCCTCTGGGCTTTCTACACACAAAGAAACCTATAAAGGGGTTGATGTGGTATATTCTGGTGACTTGTCTGCTGATTCTTGGATTGAGAAGGAGGTTGAAGCTTTGGTGGCAGATGGATGCCCGAAAGTCTGGGTTGTAACATCTGATGCATTGGAGCAACAATTGGCACATGGAGAAGGTGCTCTTATTTGGAGCTCTAAAAGATTGGTCAAAGAGATAAAAGAATCAGAAAAGGAGCTTGATGAAGAGCTGAAGGAAACCAGATCAACATCGTTGCAAGGGAAGCTTTTTCAGCCCAAGCTGAAACCTAAAGTAGTGCATGCATTGAAAGATCTCCGGAATAAGCTTGAAGAAGAAGAGCGGAGAAAGAGGTGACTACAGTGTGACTGTATGACCTAGAGGCATGAACAAATGGCTAACAACCGCACCTGGGCATGAACAAGTTTGTAAAATGGCTGACAACCTCACTTGCTGCCTTGCATTGGATCCGTAGGGCATTGACATGATGTAAGATAGGATCTGGTTTTTTGTAAAGACCCCGTTTGGACTTCGTAGAGAGAGGCTTCAAGAGGTTAGGCATGCTTTTGCATCAGAACAATTTTGCAAGCTGCAGAGAAGAAAGGCATGAACTGTACAACAATGTAAATATCAGCAGATTCCTTTAAATCAAGCTCAACTAACGAGAT]
[+] EMBL AK063613 [ GGTGACTTGTCTGCTGATTCTTGGATTGAGAAGGAGGTTGAAGCTTTGGTGGCAGATGGATGCCCGAAAGTCTGGGTTGTAACATCTGATGCATTGGAGCAACAATTGGCACATGGAGAAGGTGCTCTTATTTGGAGCTCTAAAAGATTGGTCAAAGAGATAAAAGAATCAGAAAAGGAGCTTGATGAAGAGCTGAAGGAAACCAGATCAACATCGTTGCAAGGGAAGCTTTTTCAGCACAAGCTGAAACCTAAAGTAGTGCATGCATTGAAAGATCTCCGGAATAAGCTTGAAGAAGAAGAGCGGAGAAAGAGGTGACTACAGTGTGACTGTATGACCTAGAGGCATGAACAAATGGCTAACAACCGCACCTGGGCATGAACAAGTTTGTAAAATGGCTGACAACCTCACTTGCTGCCTTGCATTGGATCCGTAGGGCATTGACATGATGTAAGATAGGATCTGGTTTTTTGTAAAGACCCCGTTTGGACTTCGTAGAGAGAGGCTTCAAGAGGTTAGGCATGCTTTTGCATCAGAACAATTTTGCAAGCTGCAGAGAAGAAAGGCATGAACTGTACAACAATGTAAATATCAGCAGATTCCTCTAAATCAAGCTCAACTAACGAGA ]
consensusID : consensus_7861#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 408 fasta sequence
[CGAGCTTTCTCTCCTCTCTCTCTGCGGCTGCGCGGTCTCCACGGCGCGGCGCAGCGGCGGAGGGATGGTGGGCTCGGCCGCGTACTCCGCGGCGTCGGCCATCGTCGTGGTGATGGCCAAGGGCAAGGGGCGGGGCGGCAGANGCGGNCCCTCTGGCGCCAACAAGGTTTCTGAGCGACGGCCTCCTAGGATAACTTCCAATGTGAAGCACAGCTTGAGGATTCTAAAATTTNGGAAGGATTATNAAAGGAGGCAAACAAGTGGACCTCAGCCTGCTNCTCGGTACCGCAAAAAGAAAGTNATAAAAGAATTGCTTCCTGATGACACTGACTTCTACGATGATGCTTCTTCCACTCTTCACTACACAAATCAGGGTTTGGAAATTGCTTCCCCNGTTTATTCTTGTGG]
[+] EMBL AF074731 [CGAGCTTTCTCTCCTCTCTCTCTGCGGCTGCGCGGTCTCCACGGCGCGGCGCAGCGGCGGAGGGATGGTGGGCTCGGCCGCGTACTCCGCGGCGTCGGCCATCGTCGTGGTGATGGCCAAGGGCAAGGGGCGGGGCGGCAGANGCGGNCCCTCTGGCGCCAACAAGGTTTCTGAGCGACGGCCTCCTAGGATAACTTCCAATGTGAAGCACAGCTTGAGGATTCTAAAATTTNGGAAGGATTATNAAAGGAGGCAAACAAGTGGACCTCAGCCTGCTNCTCGGTACCGCAAAAAGAAAGTNATAAAAGAATTGCTTCCTGATGACACTGACTTCTACGATGATGCTTCTTCCACTCTTCACTACACAAATCAGGGTTTGGAAATTGCTTCCCCNGTTTATTCTTGTGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7861#0 -----------------------------------TCTCCACGGCGCGGCGAGGCAGCGG 25
consensus_7861#2 CGAGCTTTCTCTCCTCTCTCTCTGCGGCTGCGCGGTCTCCACGGCGCGGCG---CAGCGG 57
consensus_7861#1 ------------------------------------------------------------
consensus_7861#0 CGGAGGGATGGTGGGCTCGGCCGCGTACTCCGCGGCGTCGGCCATCGT-CGTGGTGATGG 84
consensus_7861#2 CGGAGGGATGGTGGGCTCGGCCGCGTACTCCGCGGCGTCGGCCATCGT-CGTGGTGATGG 116
consensus_7861#1 ------------------------------------------TGCTGCACGAGATAAAGG 18
* ** * * * **
consensus_7861#0 CCAAGGGCAAGGGGCGGGGCGGCAGAGGCGGCCCCTCTGGCGCCAACAAGGTTTCTGAGC 144
consensus_7861#2 CCAAGGGCAAGGGGCGGGGCGGCAGANGCGGNCCCTCTGGCGCCAACAAGGTTTCTGAGC 176
consensus_7861#1 TTGTAG-TAGTATTTGATGCTGCAGCCTCTGGGCTTTCTACAC--ACAAAGAAACCTATA 75
* * * ** **** * * * * * * **** * * *
consensus_7861#0 GACGGCCTCCTAGGATAACTTCCAATGTGAAGCAGAGCTTGAGGATTCTAAAATTTTGGA 204
consensus_7861#2 GACGGCCTCCTAGGATAACTTCCAATGTGAAGCACAGCTTGAGGATTCTAAAATTTNGGA 236
consensus_7861#1 AAGGGGTTGATGTGGTATATTCTG--GTGACTT---GTCTGCTGATTCTTGGATT-GAGA 129
* ** * * * ** *** **** * ** ****** *** **
consensus_7861#0 AGGATTATGAAAGGAGGCAAACAAGTGGACCTCAGCCTGCTACTCGGTACCGCAAAAAGA 264
consensus_7861#2 AGGATTATNAAAGGAGGCAAACAAGTGGACCTCAGCCTGCTNCTCGGTACCGCAAAAAGA 296
consensus_7861#1 AGGAGGTTGAAGCTTTGGTGGCAGATGGAT----GCCCGAAAGTCTGGGTTGTAACATCT 185
**** * ** * ** **** *** * ** * * ** *
consensus_7861#0 AAGTAATAAAAGAAGTGCTTCCTGATGACACAGACTTCTACGATGATGCTTCTTCCACTC 324
consensus_7861#2 AAGTNATAAAAGAATTGCTTCCTGATGACACTGACTTCTACGATGATGCTTCTTCCACTC 356
consensus_7861#1 GATGCATTGGAGCAACAATTGGC----ACATGGAG----AAGGTGCTCTTATTTGGAGCT 237
* ** ** * ** *** ** * * ** * * ** *
consensus_7861#0 TTCACTAGTCAGGCTTGCCTCTCATTGCATTATCAGGACCTCACTACATTTTT-TGATTG 383
consensus_7861#2 TTCACTACACAAATCAGGGTTTGG--AAATTGCTT---CCCCNGTTTATTCTTGTGG--- 408
consensus_7861#1 CTAAAAGATTGGTCAAAGAGATAAAAGAATCAGAAAAGGAGCTTGATGAAGAGCTGAAGG 297
* * * ** * **
consensus_7861#0 GTGGTTCAATGAAATGCTGACATTGTTTTGTCAATTAATCTAGCACAAATCAGGGTTTGG 443
consensus_7861#2 ------------------------------------------------------------
consensus_7861#1 AAACCAGATCAACATCGTTGCAAGGGAAGCTTTTTCAGCCCAAGCTGAAACCTAAAGTAG 357
consensus_7861#0 AAATTGCTTCCCCGGTTATTCTTGTGGACGGTTATAATGTATGTGGCTACTGGGGAAAGC 503
consensus_7861#2 ------------------------------------------------------------
consensus_7861#1 TGCATGCATTGAAAGATCTCCGGAATAAGCTTGAAGAAGAAGAGCGGAGAAAGAGGTGAC 417
consensus_7861#0 TTAAGAAGGACTTCATGAATGGAAGGCAAGAG--ATTGCAAGACAAATGCTCATTGATGA 561
consensus_7861#2 ------------------------------------------------------------
consensus_7861#1 TACAGTGTGACTGTATGACCTAGAGGCATGAACAAATGGCTAACAACCGCACCTGGGCAT 477
consensus_7861#0 GCTAGTATCTTTCAGTGCAGTAAGAGGTTTGTTTGTAGTAGGAAATTAGATCCGTTACGT 621
consensus_7861#2 ------------------------------------------------------------
consensus_7861#1 GAACAAGTTTGTAAAATGGCTGACAACCTCACTTGCTGCCTTGCATTGGATCCGTAGGGC 537
consensus_7861#0 ATGGTCTCAA-GCATGATTTCCTTAAAACTCACTTATGCTGTTTACTTAAGCTGTAGCTG 680
consensus_7861#2 ------------------------------------------------------------
consensus_7861#1 ATTGACATGATGTAAGATAGGATCTGGTTTTTTGTAAAGACCCCGTTTGGACTTCGTAGA 597
consensus_7861#0 TTGAAGCTGATAGATGTTAGTATACTCTGATTAGATGTTAGGTACTTCTTATCTCTATTA 740
consensus_7861#2 ------------------------------------------------------------
consensus_7861#1 GAGAGGCTTCAAGAGGTTAGG----CATGCTTTTGCATCAGAACAATTTTGCAAGCTGCA 653
consensus_7861#0 GAGCAAACACCAGTTCAATAGTGGCTTATAGTGAAAAAGGTAGTCATGGCTTACAAATGT 800
consensus_7861#2 ------------------------------------------------------------
consensus_7861#1 GAGAAGAAA---GGCATGAACTGTACAACAATGTAAATATCAGCAGATTCCTTTAAATCA 710
consensus_7861#0 A--TCATCTTGCCAAGTGGGGAGCATAAGTAGATGATGATTTGTTTTTATCTGCCGGTGG 858
consensus_7861#2 ------------------------------------------------------------
consensus_7861#1 AGCTCAACTAACGAGAT------------------------------------------- 727
consensus_7861#0 TGCGTAATTTCTTCTCAATAGCTATCTGATGTTCTCCCATTCCAGCATTCTTATATCATT 918
consensus_7861#2 ------------------------------------------------------------
consensus_7861#1 ------------------------------------------------------------
consensus_7861#0 TGTCATTGTCATGCTTGCAGAGATAAAGGTTGTAGTAGTATTTGATGCTGCAGCCTCTGG 978
consensus_7861#2 ------------------------------------------------------------
consensus_7861#1 ------------------------------------------------------------
consensus_7861#0 GCTTTCTCACACAAAGAAACCTTAAAGGGTTTGATGTGGTATATTCTGGTGACTTGTCTG 1038
consensus_7861#2 ------------------------------------------------------------
consensus_7861#1 ------------------------------------------------------------
consensus_7861#0 CTGATTCTTGGATTGAGAAGGAGGTAATGCTGATAAATTCTTATTCAGAACAAAGGATAC 1098
consensus_7861#2 ------------------------------------------------------------
consensus_7861#1 ------------------------------------------------------------
consensus_7861#0 C 1099
consensus_7861#2 -
consensus_7861#1 -
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||