These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7862#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 2076 fasta sequence [TGAGAAAAACAAAGGAGTGAGCGTCGCCCATGAATCCGAGACTAATGGCCTGATTGACAATGACTCAGTAGTTGATCACGAGGAACAAAGAGAGCAGAATTCTGTAGAGGCCAGGAAAGAAGGCATGGTAGAGCTTAGTGTGTACAAAAAGTATGCAGCATTCGCGGGATGGTCAATTGCTTTTCTGATATGTCTAAGTGTGTTCTTAATGCAAGCATCTCGTAATGGCAATGATCTTTGGTTAACTTACTGGGTCGATACCAGCACAGCTTCCTCACGCACAATATTTTATCTGACTATCCTTGCTGCGTTTGGTGCATTGAACTCTTTTTTCACATTGGGAAGGGCGTTCTCTTTTGCATATGGTGGTCTCTGTGCAGCAATTCAAATACATGCTGATCTTCTTAATAATCTAATCGGTGCACCAGTTTCATTTTTTGACCAAAATCCTAGTGGCCGGATACTGAACAGATTATCCTCAGACCTATATGCCATTGATGATTCTCTTCCGTTTATCCTCAACATATTCGTGGCAAACTTCTTCAGCTTGCTTGGTACTCTGGTTGTAATATCTTATTCACAGGTTTCATTCTTACTGATCTTAGTTCCTCTCTGGCTTATCTACAGAAATGTACAGGAGCCGAATAGGTCTACATCACGTGAAGTACGACGACTTGACAGTGTTGCTCGTTCACCAATATATTCATCTTTTACAGAGACACTTGATGGTTCATCAACAATAAGAGCATTTCAAAAAGAAGGATTCTTCTTAGAAAGATTCATCCAACATGTGACACTATACCAGAAAACATCCTATTGTGAACTGGTTGCTGGTCTGTGGCTCTCATTGAGACTCCAGTTGTTGGCAGGTTTTATAATTCTGTTCATCGCCATTATGGCCATTGTTGGCTTCAATAGTAAATCTGTTATTAATTTTGGTACACCTGGACTGGTCGGCCTGGCGCTGTCATATGCCGCACCCGTTGTACCATTGTTGAATGGCTTCTTAACCACCTTTACAGAGACAGAAAAGGAAATGATTTCTGTTGAGAGAGTTGTTGAGTATGTTGGCATACCTCAAGAAGAACTTCATGGATCGGAATCCCCTCACAGTGGCTGGCCAACAGAGGGGAACATTGAGTTTGAGCGTGTTACTCTAAGGTACAAGGAGGATTTACCCCCGGCTTTGAATGATGTTTCGTTCTTTATTTCATCAGGCATGCAGGTTGGAATAATAGGGAGGACTGGAGCAGGCAAATCCAGTATACTGAATGCACTTCTTCGTTTAGCTCCAATCTGTAATGGCCGCATCTTAGTAGATGACTTTGATGTGGCCAAACTTGCTGTCCGAGATCTTCGTGGACATTTTGCAGTAGTCCCACAGAGCCCGTTTTTGTTCGATGGGTCTTTGAGGGAAAATCTAGACCCTTTTAATAGAACAACAGATCTCAGGATATGGGAAGCTCTTGATAAGTGTCATATGAAGACAGAGATTGAATCTATAGGTGGACTTGACATCCATGTGAAAGAAAGTGGTGCGTCTTTTTCAGTAGGTCAGAGACAACTCCTGTGTCTTGCCCGTGCTATCCTTAAATCATCCAAGATACTCTGCCTTGATGAATGCACAGCTAATGTTGACAATCAGACAGCCTCCTTGTTGCAAAATACTATTTCTGCTGAATGCAAAGGCATGACAGTTCTGACGATAGCACATCGAATTTCAACAGTGATGAAGATGGACAGTATTCTAGTTCTTGATCAAGGAAAATTGGTTGAAGAAGGAAACCCAGAGGTTCTTGTGGATGACAAATTCTCAAGATTCTCACGATTTGCCAAGGCATCTAACATGTGATTCTAGGTTAACATACTCTGATGGTCTAGTTTTTCTGCTAACTCCCCTTGAGCAGATGTACTAGACACGTTAGATCAGCTGCAATTTTACATCGATAGCTGGTAGGGAACATAAACTCTGATCATCTAGCTTATCATTAGTCATTGAAAAAGAGATTGAAGAAAATGTTTCTTTCCCTTGAAAAATTAAATTTGGGCTAATGTTCGATCAAAAAAAAAAAAAGA] [+] EMBL CF322492 [TGAGAAAAACAAAGGAGTGAGCGTCGCCCATGAATCCGAGACTAATGGCCTGATTGACAATGACTCAGTAGTTGATCACGAGGAACAAAGAGAGCAGAATTCTGTAGAGGCCAGGAAAGAAGGCATGGTAGAGCTTAGTGTGTACAAAAAGTATGCAGCATTCGCGGGATGGTCAATTGCTTTTCTGATATGTCTAAGTGTGTTCTTAATGCAAGCATCTCGTAATGGCAATGATCTTTGGTTAACTTACTGGGTCGATACCAGCACAGCTTCCTCACGCACAATATTTTATCTGACTATCCTTGCTGCGTTTGGTGCATTGAACTCTTTTTTCACATTGGGAAGGGCGTTCTCTTTTGCATATGGTGGTCTCTGTGCAGCAATTCAAATACATGCTGATCTTCTTAATAATCTAATCGGTGCACCAGTTTCATTTTTTGACCAAAATCCTAGTGGCCGGATACTGAACAGATTATCCTCAGACCTATATGCCATTGATGATTCTCTTCCGTTTATCCTCAACATATTCGTGGCAAACTTCTTCAGCTTGCTTGGTACTCTGGTTGTAATATCTTATTCACAGGTTTCATTCTTACTGATCTTAGTTCCTCTCTGGCTTATCTACAGAAATGTACAGGAGCCGA ] [+] EMBL CB674627 [ CTCACGCACAATATTTTATCTGACTATCCTTGCTGCGTTTGGTGCATTGAACTCTTTTTTCACATTGGGAAGGGCGTTCTCTTTTGCATATGGTGGTCTCTGTGCAGCAATTCAAATACATGCTGATCTTCTTAATAATCTAATCGGTGCACCAGTTTCATTTTTTGACCAAAATCCTAGTGGCCGGATACTGAACAGATTATCCTCAGACCTATATGCCATTGATGATTCTCTTCCGTTTATCCTCAACATATTCGTGGCAAACTTCTTCAGCTTGCTTGGTACTCTGGTTGTAATATCTTATTCACAGGTTTCATTCTTACTGATCTTAGTTCCTCTCTGGCTTATCTACAGAAATGTACAGTTCTATTATAGGTCTACATCACGTGAAGTACGACGACTTGACAGTGTTGCTCGTTCACCAATATATTCATCTTTTACAGAGACACTTGATGGTTCATCAACAATAAGAGCATTTCAAAAAGAAGGATTCTTCTTAGAAAGATTCATCCAACATGTGACACTATACCAGAAAACATCCTATTGTGAACTGGTTGCTGGTCTGTGGCTCTCATTGAGACTCCAGTTGTTGGCAGGTTTTATAATTCTGTTCATCGCCATTATGGCCATTGTTGGCTTCAATAGTAAATCTGTTATTAATTTTGGTACACCTGGACTGGTCGGCCTGGCGCTGTCATATGCCGCACCCGTTGTACCATTGTTGAATGGCTTCTTAACCACCTTTACAGAGACAGAAAAGGAAATG ] [+] EMBL C26306 [ GTCGGCCTGGCGCTGTCATATGCCGCACCCGTTGTACCATTGTTGAATGGCTTCTTAACCACCTTTACAGAGACAGAAAAGGAAATNATTTCTGTTGAGAGAGTTGTTGAGTATGTTGGCATACCTCAAGAAGAACTTCATGGATCGGAATCCCCTCACAGTGGCTGGCCAACAGAGGGGAACATTGAGTTTGAGCGTGTTACTCTAAGGTACAAGGAGGATTTACCCCCGGCTTTGAATGATGTTTCGTTCTTTATTTCATCAGGCATGCAGGTTGGAATAATAGGGAGGACTGGAGCAGGCAAATCCAGTATACTGAATGCACTTCTTCGTTTAGCTCCAATCTGTAATGGCCGCATCTTAGTA ] [-] EMBL CB674628 [ CCAGTATACTGAATGCACTTCTTCGTTTAGCTCCAATCTGTAATGGCCGCATCTTAGTAGATGACTTTGATGTGGCCAAACTTGCTGTCCGAGATCTTCGTGGACATTTTGCAGTAGTCCCACAGAGCCCGTTTTTGTTCGATGGGTCTTTGAGGGAAAATCTAGACCCTTTTAATAGAACAACAGATCTCAGGATATGGGAAGCTCTTGATAAGTGTCATATGAAGACAGAGATTGAATCTATAGGTGGACTTGACATCCATGTGAAAGAAAGTGGTGCGTCTTTTTCAGTAGGTCAGAGACAACTCCTGTGTCTTGCCCGTGCTATCCTTAAATCATCCAAGATACTCTGCCTTGATGAATGCACAGCTAATGTTGACAATCAGACAGCCTCCTTGTTGCAAAATACTATTTCTGCTGAATGCAAAGGCATGACAGTTCTGACGATAGCACATCGAATTTCAACAGTGATGAAGATGGACAGTATTCTAGTTCTTGATCAAGGAAAATTGGTTGAAGAAGGAAACCCAGAGGTTCTTGTGGATGACAAATTCTCAAGATTCTCACGATTTGCCAAGGCATCTAACATGTGATTCTAGGTTAACATACTCTGATGGTCTAGTTTTTCTGCTAACTCCCCTTGAGCAGATGTACTAGACACGTTAGATCAGCTGCAATTTTACATCGATAGCTGGTAGGGAACATAAACTCTGATCATCTAGCTTATCATTAGTCATTGAAAAAGAGATTGAAGAAAATGTTTCTTTCCCTTGAAAAATTAAATTTGGGCTAATGTTCGATCAAAAAAAAAAAAAGA] consensusID : consensus_7862#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 820 fasta sequence [ATGGCCCGCATCTTAGTAAGATGNCCTTTNATGTGGCCCAAANCTTGCCTGTCCCGAGGATCTCCGTGGACATTTTGCCAGTAGTCCCACCGGACCCCGTTTTTGTTCNATGGGTCCTTTGAGGGAAAATCTAGNCCCTTTTAATGGAACNACCAGATCTCCAGGTTATGGGAAGCTCTTGATAAGTGTCATATGAAGACAGAGATTGAATCTATAGGTGGACTTGACCATCCATGTGAAAGAAAGTGGTGCGTCTTTTTCAGTAGGTCAGAGACAACTCCTGTGTCTTGCCCGTGCTATCCTTAAATCATCCAAGATACTCTGCCTTGATGAATGCACAGCTAATGTTGACAATCAGACAGCCTCCTTGTTGCAAAATACTATTTCTGCTGAATGCAAAGGCATGACAGTTCTGACGATAGCACATCGAATTTCAACAGTGATGAAGATGGACAGTATTCTAGTTCTTGATCAAGGAAAATTGGTTGAAGAAGGAAACCCAGAGGTTCTTGTGGATGACAAATTCTCAAGATTCTCACGATTTGCCAAGGCATCTAACATGTGATTCTAGGTTAACATACTCTGATGGTCTAGTTTTTCTGCTAACTCCCCTTGAGCAGATGTACTAGACACGTTAGATCAGCTGCAATTTTACATCGATAGCTGGTAGGGAACATAAACTCTGATCATCTAGCTTATCATTAGTCATTGAAAAAGAGATTGAAGAAAATGTTTCTTTCCCTTGAAAAATTAAATTTGGGCTAATGTTCGATCCGGATGATTGCAAAATTGATTGATCACTGAAAGGGAAAAAAAAAAA] [+] EMBL AU100690 [ATGGCCCGCATCTTAGTAAGATGNCCTTTNATGTGGCCCAAANCTTGCCTGTCCCGAGGATCTCCGTGGACATTTTGCCAGTAGTCCCACCGGACCCCGTTTTTGTTCNATGGGTCCTTTGAGGGAAAATCTAGNCCCTTTTAATGGAACNACCAGATCTCCAGGTTATGGGAAGCTCTTGATAAGTGTCATATGAAGACAGAGATTGAATCTATAGGTGGACTTGACCATCCATGTGAAAGAAAGTGGTGCGTCTTTTTCAGTAGGTCAGAGACAACTCCTGTGTCTTGCCCGTGCTATCCTTAAATCATCCAAGATACTCTGCCTTGATGAATGCACAGCTAATGTTGACAATCAGACAGCCTCCTTGTTGCAAAATACTATTTCTGCTGAATGCAAAGGCATGACAGTTCTGACGATAGCACATCGAATTTCAACAGTGATGAAGATGGACAGTATTCTAGTTCTTGATCAAGGAAAATTGGTTGAAGAAGGAAACCCAGAGGTTCTTGTGGATGACAAATTCTCAAGATTCTCACGATTTGCCAAGGCATCTAACATGTGATTCTAGGTTAACATACTCTGATGGTCTAGTTTTTCTGCTAACTCCCCTTGAGCAGATGTACTAGACACGTTAGATCAGCTGCAATTTTACATCGATAGCTGGTAGGGAACATAAACTCTGATCATCTAGCTTATCATTAGTCATTGAAAAAGAGATTGAAGAAAATGTTTCTTTCCCTTGAAAAATTAAATTTGGGCTAATGTTCGATCCGGATGATTGCAAAATTGATTGATCACTGAAAGGGAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7862#0 TGAGAAAAACAAAGGAGTGAGCGTCGCCCATGAATCCGAGACTAATGGCCTGATTGACAA 60 consensus_7862#1 ------------------------------------------------------------ consensus_7862#0 TGACTCAGTAGTTGATCACGAGGAACAAAGAGAGCAGAATTCTGTAGAGGCCAGGAAAGA 120 consensus_7862#1 ------------------------------------------------------------ consensus_7862#0 AGGCATGGTAGAGCTTAGTGTGTACAAAAAGTATGCAGCATTCGCGGGATGGTCAATTGC 180 consensus_7862#1 ------------------------------------------------------------ consensus_7862#0 TTTTCTGATATGTCTAAGTGTGTTCTTAATGCAAGCATCTCGTAATGGCAATGATCTTTG 240 consensus_7862#1 ------------------------------------------------------------ consensus_7862#0 GTTAACTTACTGGGTCGATACCAGCACAGCTTCCTCACGCACAATATTTTATCTGACTAT 300 consensus_7862#1 ------------------------------------------------------------ consensus_7862#0 CCTTGCTGCGTTTGGTGCATTGAACTCTTTTTTCACATTGGGAAGGGCGTTCTCTTTTGC 360 consensus_7862#1 ------------------------------------------------------------ consensus_7862#0 ATATGGTGGTCTCTGTGCAGCAATTCAAATACATGCTGATCTTCTTAATAATCTAATCGG 420 consensus_7862#1 ------------------------------------------------------------ consensus_7862#0 TGCACCAGTTTCATTTTTTGACCAAAATCCTAGTGGCCGGATACTGAACAGATTATCCTC 480 consensus_7862#1 ------------------------------------------------------------ consensus_7862#0 AGACCTATATGCCATTGATGATTCTCTTCCGTTTATCCTCAACATATTCGTGGCAAACTT 540 consensus_7862#1 ------------------------------------------------------------ consensus_7862#0 CTTCAGCTTGCTTGGTACTCTGGTTGTAATATCTTATTCACAGGTTTCATTCTTACTGAT 600 consensus_7862#1 ------------------------------------------------------------ consensus_7862#0 CTTAGTTCCTCTCTGGCTTATCTACAGAAATGTACAGGAGCCGAATAGGTCTACATCACG 660 consensus_7862#1 ------------------------------------------------------------ consensus_7862#0 TGAAGTACGACGACTTGACAGTGTTGCTCGTTCACCAATATATTCATCTTTTACAGAGAC 720 consensus_7862#1 ------------------------------------------------------------ consensus_7862#0 ACTTGATGGTTCATCAACAATAAGAGCATTTCAAAAAGAAGGATTCTTCTTAGAAAGATT 780 consensus_7862#1 ------------------------------------------------------------ consensus_7862#0 CATCCAACATGTGACACTATACCAGAAAACATCCTATTGTGAACTGGTTGCTGGTCTGTG 840 consensus_7862#1 ------------------------------------------------------------ consensus_7862#0 GCTCTCATTGAGACTCCAGTTGTTGGCAGGTTTTATAATTCTGTTCATCGCCATTATGGC 900 consensus_7862#1 ------------------------------------------------------------ consensus_7862#0 CATTGTTGGCTTCAATAGTAAATCTGTTATTAATTTTGGTACACCTGGACTGGTCGGCCT 960 consensus_7862#1 ------------------------------------------------------------ consensus_7862#0 GGCGCTGTCATATGCCGCACCCGTTGTACCATTGTTGAATGGCTTCTTAACCACCTTTAC 1020 consensus_7862#1 ------------------------------------------------------------ consensus_7862#0 AGAGACAGAAAAGGAAATGATTTCTGTTGAGAGAGTTGTTGAGTATGTTGGCATACCTCA 1080 consensus_7862#1 ------------------------------------------------------------ consensus_7862#0 AGAAGAACTTCATGGATCGGAATCCCCTCACAGTGGCTGGCCAACAGAGGGGAACATTGA 1140 consensus_7862#1 ------------------------------------------------------------ consensus_7862#0 GTTTGAGCGTGTTACTCTAAGGTACAAGGAGGATTTACCCCCGGCTTTGAATGATGTTTC 1200 consensus_7862#1 ------------------------------------------------------------ consensus_7862#0 GTTCTTTATTTCATCAGGCATGCAGGTTGGAATAATAGGGAGGACTGGAGCAGGCAAATC 1260 consensus_7862#1 ------------------------------------------------------------ consensus_7862#0 CAGTATACTGAATGCACTTCTTCGTTTAGCTCCAATCTGTAATGGCC-GCATCTTAGTA- 1318 consensus_7862#1 -----------------------------------------ATGGCCCGCATCTTAGTAA 19 ****** *********** consensus_7862#0 GATGAC-TTTGATGTGGCC--AAACTTGC-TGTCC--GAGATCTTCGTGGACATTTTGC- 1371 consensus_7862#1 GATGNCCTTTNATGTGGCCCAAANCTTGCCTGTCCCGAGGATCTCCGTGGACATTTTGCC 79 **** * *** ******** ** ***** ***** ***** ************** consensus_7862#0 AGTAGTCCCAC-AGAGCCCGTTTTTGTTCGATGGGTC-TTTGAGGGAAAATCTAGACCCT 1429 consensus_7862#1 AGTAGTCCCACCGGACCCCGTTTTTGTTCNATGGGTCCTTTGAGGGAAAATCTAGNCCCT 139 *********** ** ************* ******* ***************** **** consensus_7862#0 TTTAATAGAACAAC-AGATCTC-AGGATATGGGAAGCTCTTGATAAGTGTCATATGAAGA 1487 consensus_7862#1 TTTAATGGAACNACCAGATCTCCAGGTTATGGGAAGCTCTTGATAAGTGTCATATGAAGA 199 ****** **** ** ******* *** ********************************* consensus_7862#0 CAGAGATTGAATCTATAGGTGGACTTGAC-ATCCATGTGAAAGAAAGTGGTGCGTCTTTT 1546 consensus_7862#1 CAGAGATTGAATCTATAGGTGGACTTGACCATCCATGTGAAAGAAAGTGGTGCGTCTTTT 259 ***************************** ****************************** consensus_7862#0 TCAGTAGGTCAGAGACAACTCCTGTGTCTTGCCCGTGCTATCCTTAAATCATCCAAGATA 1606 consensus_7862#1 TCAGTAGGTCAGAGACAACTCCTGTGTCTTGCCCGTGCTATCCTTAAATCATCCAAGATA 319 ************************************************************ consensus_7862#0 CTCTGCCTTGATGAATGCACAGCTAATGTTGACAATCAGACAGCCTCCTTGTTGCAAAAT 1666 consensus_7862#1 CTCTGCCTTGATGAATGCACAGCTAATGTTGACAATCAGACAGCCTCCTTGTTGCAAAAT 379 ************************************************************ consensus_7862#0 ACTATTTCTGCTGAATGCAAAGGCATGACAGTTCTGACGATAGCACATCGAATTTCAACA 1726 consensus_7862#1 ACTATTTCTGCTGAATGCAAAGGCATGACAGTTCTGACGATAGCACATCGAATTTCAACA 439 ************************************************************ consensus_7862#0 GTGATGAAGATGGACAGTATTCTAGTTCTTGATCAAGGAAAATTGGTTGAAGAAGGAAAC 1786 consensus_7862#1 GTGATGAAGATGGACAGTATTCTAGTTCTTGATCAAGGAAAATTGGTTGAAGAAGGAAAC 499 ************************************************************ consensus_7862#0 CCAGAGGTTCTTGTGGATGACAAATTCTCAAGATTCTCACGATTTGCCAAGGCATCTAAC 1846 consensus_7862#1 CCAGAGGTTCTTGTGGATGACAAATTCTCAAGATTCTCACGATTTGCCAAGGCATCTAAC 559 ************************************************************ consensus_7862#0 ATGTGATTCTAGGTTAACATACTCTGATGGTCTAGTTTTTCTGCTAACTCCCCTTGAGCA 1906 consensus_7862#1 ATGTGATTCTAGGTTAACATACTCTGATGGTCTAGTTTTTCTGCTAACTCCCCTTGAGCA 619 ************************************************************ consensus_7862#0 GATGTACTAGACACGTTAGATCAGCTGCAATTTTACATCGATAGCTGGTAGGGAACATAA 1966 consensus_7862#1 GATGTACTAGACACGTTAGATCAGCTGCAATTTTACATCGATAGCTGGTAGGGAACATAA 679 ************************************************************ consensus_7862#0 ACTCTGATCATCTAGCTTATCATTAGTCATTGAAAAAGAGATTGAAGAAAATGTTTCTTT 2026 consensus_7862#1 ACTCTGATCATCTAGCTTATCATTAGTCATTGAAAAAGAGATTGAAGAAAATGTTTCTTT 739 ************************************************************ consensus_7862#0 CCCTTGAAAAATTAAATTTGGGCTAATGTTCGATCAAAAAAAAAAAAAGA---------- 2076 consensus_7862#1 CCCTTGAAAAATTAAATTTGGGCTAATGTTCGATCCGGATGATTGCAAAATTGATTGATC 799 *********************************** * * ** * consensus_7862#0 --------------------- consensus_7862#1 ACTGAAAGGGAAAAAAAAAAA 820 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||