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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7868#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 750 fasta sequence
[GACAGCCAGTTTGCGAGAACTCTGAGAAAAGAACAGCAAAAGCCACTGCAATAGAAGCGCGCGAGCGCTGAGAGTATCTCAGATCCATGGAGATGGAGGCTGCCACGCCGGTGCCGAGGAGTGACGGCAGGAAGCTGGCGAGGTGCCCGAGGCTGCAGATGGACGCCAAGACGGTCACTGCCATCGAGCAGTCCACGGGCGCGGCCATCGCCGACGCCGCTGCGGCTGGCGCCGAGGGCGCCGGCGGCGG-GATGCGCGTCAAGATCGTGCTGAGCAAGCAGCAGCTGAAGCAGGTGGCCGCGGCCGTCGCCGGAGGGGGCGCCTTCGCGCTGCCGCCGGCGCTGGAGCAGCTCGTGAGCGTGCTCAAGCGGCAGCACGCGAAGAAGCAGGTGGCAGCGGCTGCTGATGTGGTCGTCGGAAGGCGCCGCTGCCGGTGGTCGCCGGCGTTGCAGAGCATCCCGGAGGAGTGCTTTAGCTAGGTACCCACGTCTACGAATGTGTAGTCGATTCGCAACATGTATAGCTTCGGTGATCAGTCCCTCCTTTTTTTGGCGATATTCCCTTCCTTCCTACTAGGCTGCAACCGATCGATCTAGTTGGGCCAAAGTTAGTGCCCAATGGTTGCATCCCAACTTTGAAATGTCATGTATTTTAATCTGGCATTTGGACCCAAATTTTCCTCCGTTTTCCTGGTTCGATGCATGTACATATCTCTGCACACGAATAGTATTCAATAAGATGATGAGCTGG]
[+] EMBL AK058228 [GACAGCCAGTTTGCGAGAACTCTGAGAAAAGAACAGCAAAAGCCACTGCAATAGAAGCGCGCGAGCGCTGAGAGTATCTCAGATCCATGGAGATGGAGGCTGCCACGCCGGTGCCGAGGAGTGACGGCAGGAAGCTGGCGAGGTGCCCGAGGCTGCAGATGGACGCCAAGACGGTCACTGCCATCGAGCAGTCCACGGGCGCGGCCATCGCCGACGCCGCTGCGGCTGGCGCCGAGGGCGCCGGCGGCGG GATGCGCGTCAAGATCGTGCTGAGCAAGCAGCAGCTGAAGCAGGTGGCCGCGGCCGTCGCCGGAGGGGGCGCCTTCGCGCTGCCGCCGGCGCTGGAGCAGCTCGTGAGCGTGCTCAAGCGGCAGCACGCGAAGAAGCAGGTGGCAGCGGCTGCTGATGTGGTCGTCGGAAGGCGCCGCTGCCGGTGGTCGCCGGCGTTGCAGAGCATCCCGGAGGAGTGCTTTAGCTAGGTACCCACGTCTACGAATGTGTAGTCGATTCGCAACATGTATAGCTTCGGTGATCAGTCCCTCCTTTTTTTGGCGATATTCCCTTCCTTCCTACTAGGCTGCAACCGATCGATCTAGTTGGGCCAAAGTTAGTGCCCAATGGTTGCATCCCAACTTTGAAATGTCATGTATTTTAATCTGGCATTTGGACCCAAATTTTCCTCCGTTTTCCTGGTTCGATGCATGTACATATCTCTGCACACGAATAGTATTCAATAAGATGATGAGCTGG]
[+] EMBL AK099066 [ AGAACTCTGAGAAAAGAACAGCAAAAGCCACTGCAATAGAAGCGCGCGAGCGCTGAGAGTATCTCAGATCCATGGAGATGGAGGCTGCCACGCCGGTGCCGAGGAGTGACGGCAGGAAGCTGGCGAGGTGCCCGAGGCTGCAGATGGACGCCAAGACGGTCACTGCCATCGAGCAGTCCACGGGCGCGGCCATCGCCGACGCCGCTGCGGCTGGCGCCGAGGGCGCCGGCGGCGG GATGCGCGTCAAGATCGTGCTGAGCAAGCAGCAGCTGAAGCAGGTGGCCGCGGCCGTCGCCGGAGGGGGCGCCTTCGCGCTGCCGCCGGCGCTGGAGCAGCTCGTGAGCGTGCTCAAGCGGCAGCACGCGAAGAAGCAGGTGGCAGCGGCTGCTGATGTGGTCGTCGGAAGGCGCCGCTGCCGGTGGTCGCCGGCGTTGCAGAGCATCCCGGAGGAGTGCTTTAGCTAGGTACCCACGTCTACGAATGTGTAGTCGATTCGCAACATGTATAGCTTCGGTGATCAGTCCCTCCTTTTTTTGGCGATATTCCCTTCCTTCCTACTAGGCTGCAACCGATCGATCTAGTTGGGCCAAAGTTAGTGCCCAATGGTTGCATCCCAACTTTGAAATGTCATGTATTTTAATCTGGCATTTGGACCCAAATTTTCCTCCGTTTTCCTGGTTCGATGCATGTACATATCTCTGCACACGAATAGTATTCAATAAGATGATGAGC ]
[+] EMBL OSS15891A [ GAAAAGAACAGCAAAAGCCACTGCAATAGAAGCGCGCGA CTNNNGNAGTATCTCAGATCCATGGAGATGGAGGCTGCCACGCCGGTGCCGAGGAGTGACGGCAGGAAGCTGGCGAGGTGCCCGAGGCTGCAGATGGACGCCAAGACGGTCACTGCCATCGAGCAGTCCACGGGCGCGGCCATCGCCGACGCCGCTGCGGCTGGCGCCGAGGGCGCGNGCGGCGGNGATGCGCGTCAAGATCGTGCTGAGCAAGCAGCAGCTGAAGCAGGTGGCCGCGGCCGTCGCCGGAGGGGGCGCCTTCGCGCTGCCGCCGGCGCTGGAGCAGCTCGTGAGCTTNCTCAAG ]
[+] EMBL CA755586 [ CAAAAGCCACTGCAATAGAAGCGCGCGAGCGCTGAGAGTATCTCAGATCCATGGAGATGGAGGCTGCCACGCCGGTGCCGAGGAGTGACGGCAGGAAGCTGGCGAGGTGCCCGAGGCTGCAGATGGACGCCAAGACGGTCACTGCCATCGAGCAGTCCACGGGCGCGGCCATCGCCGACGCCGCTGCGGCTGGCGCCGAGGGCGCCGGCGGCGG GATGCGCGTCAAGATCGTGCTGAGCAAGCAGCAGCTGAAGCAGGTGGCCGCGGCCGTCGCCGGAGGGGGCGCCTTCGCGCTGCCGCCGGCGCTGGAGCAGCTCGTGAGCGTGCTCAAGCGGCAGCACGCGAAGAAGCAGGTGGCAGCGGCTGCTGATGTGGTCGTCGGAAGGCGCCGCTGCCGGTGGTCGCCGGCGTTGCAGAGCATCCCGGAGGAGTGCTTTAGCTAGGTACCCACGTCTACGAATGTGTAGTCGATTCGCAACATGTATAGCTTCGGTGATCAGTCCCTCCTTTTTTTGGCGATATT CCTTCCTTCCTACTAGGCTGCAACCGATCGATCTAGTTGGGCCNAAGTTAGTGCCCAATGGTTGCATCCC ACTTTGAAAT ]
consensusID : consensus_7868#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 433 fasta sequence
[GCGCGTCAAGATCGTGCTGAGCAAGCAGCAGCTGAAGCAGGTGGCCGCGGCCGTCGCCGGAGGGGGCGCCTTCGCGCTGCCGCCGGCGCTGGAGCAGCTCGTGAGCGTGCTCAAGCGGCAGCACGCGAAGAAGCAGGTGGCAGCGGCTGCTGATGTGGTCGTCGGAAGGCGCCGCTGCCGGTGGTCGCCGGCGTTGCAGAGCATCCCGGAGGAGTGCTTTAGCTAGGTACCCACGTCTACGAATGTGTAGTCGATTCGCAACATGTATAGCTTCGGTGATCAGTCCCTCCTTTTTTTGGCGATATTCCCTTCCTTCCTACTAGGCTGCAACCGATCGATCTAGTTGGGCCAAAGTTAGTGCCCAATGGTTGCATCCCAACTTTGAAATGTCATGTATTTTAATCTGGCATTTGGACCCAAAAAAAAAAAAAAA]
[+] EMBL AU174095 [GCGCGTCAAGATCGTGCTGAGCAAGCAGCAGCTGAAGCAGGTGGCCGCGGCCGTCGCCGGAGGGGGCGCCTTCGCGCTGCCGCCGGCGCTGGAGCAGCTCGTGAGCGTGCTCAAGCGGCAGCACGCGAAGAAGCAGGTGGCAGCGGCTGCTGATGTGGTCGTCGGAAGGCGCCGCTGCCGGTGGTCGCCGGCGTTGCAGAGCATCCCGGAGGAGTGCTTTAGCTAGGTACCCACGTCTACGAATGTGTAGTCGATTCGCAACATGTATAGCTTCGGTGATCAGTCCCTCCTTTTTTTGGCGATATTCCCTTCCTTCCTACTAGGCTGCAACCGATCGATCTAGTTGGGCCAAAGTTAGTGCCCAATGGTTGCATCCCAACTTTGAAATGTCATGTATTTTAATCTGGCATTTGGACCCAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7868#0 GACAGCCAGTTTGCGAGAACTCTGAGAAAAGAACAGCAAAAGCCACTGCAATAGAAGCGC 60
consensus_7868#1 ------------------------------------------------------------
consensus_7868#0 GCGAGCGCTGAGAGTATCTCAGATCCATGGAGATGGAGGCTGCCACGCCGGTGCCGAGGA 120
consensus_7868#1 ------------------------------------------------------------
consensus_7868#0 GTGACGGCAGGAAGCTGGCGAGGTGCCCGAGGCTGCAGATGGACGCCAAGACGGTCACTG 180
consensus_7868#1 ------------------------------------------------------------
consensus_7868#0 CCATCGAGCAGTCCACGGGCGCGGCCATCGCCGACGCCGCTGCGGCTGGCGCCGAGGGCG 240
consensus_7868#1 ------------------------------------------------------------
consensus_7868#0 CCGGCGGCGGGATGCGCGTCAAGATCGTGCTGAGCAAGCAGCAGCTGAAGCAGGTGGCCG 300
consensus_7868#1 -------------GCGCGTCAAGATCGTGCTGAGCAAGCAGCAGCTGAAGCAGGTGGCCG 47
***********************************************
consensus_7868#0 CGGCCGTCGCCGGAGGGGGCGCCTTCGCGCTGCCGCCGGCGCTGGAGCAGCTCGTGAGCG 360
consensus_7868#1 CGGCCGTCGCCGGAGGGGGCGCCTTCGCGCTGCCGCCGGCGCTGGAGCAGCTCGTGAGCG 107
************************************************************
consensus_7868#0 TGCTCAAGCGGCAGCACGCGAAGAAGCAGGTGGCAGCGGCTGCTGATGTGGTCGTCGGAA 420
consensus_7868#1 TGCTCAAGCGGCAGCACGCGAAGAAGCAGGTGGCAGCGGCTGCTGATGTGGTCGTCGGAA 167
************************************************************
consensus_7868#0 GGCGCCGCTGCCGGTGGTCGCCGGCGTTGCAGAGCATCCCGGAGGAGTGCTTTAGCTAGG 480
consensus_7868#1 GGCGCCGCTGCCGGTGGTCGCCGGCGTTGCAGAGCATCCCGGAGGAGTGCTTTAGCTAGG 227
************************************************************
consensus_7868#0 TACCCACGTCTACGAATGTGTAGTCGATTCGCAACATGTATAGCTTCGGTGATCAGTCCC 540
consensus_7868#1 TACCCACGTCTACGAATGTGTAGTCGATTCGCAACATGTATAGCTTCGGTGATCAGTCCC 287
************************************************************
consensus_7868#0 TCCTTTTTTTGGCGATATTCCCTTCCTTCCTACTAGGCTGCAACCGATCGATCTAGTTGG 600
consensus_7868#1 TCCTTTTTTTGGCGATATTCCCTTCCTTCCTACTAGGCTGCAACCGATCGATCTAGTTGG 347
************************************************************
consensus_7868#0 GCCAAAGTTAGTGCCCAATGGTTGCATCCCAACTTTGAAATGTCATGTATTTTAATCTGG 660
consensus_7868#1 GCCAAAGTTAGTGCCCAATGGTTGCATCCCAACTTTGAAATGTCATGTATTTTAATCTGG 407
************************************************************
consensus_7868#0 CATTTGGACCCAAATTTTCCTCCGTTTTCCTGGTTCGATGCATGTACATATCTCTGCACA 720
consensus_7868#1 CATTTGGACCCAAAAAAAAAAAAAAA---------------------------------- 433
**************
consensus_7868#0 CGAATAGTATTCAATAAGATGATGAGCTGG 750
consensus_7868#1 ------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||