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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7875#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1302 fasta sequence
[TGTATAACATTTTCGTTTAACACTATACCACCTATTCTTCTCGCACATTCGCACGCTCCTGCATCTCCATCCGTCGCCACCACCTCCACCGCCTCCGCCTCCGCCCCCGCCCCCTCTTCCGCCGCCACCAATGTCTTCGGCGGCCGGTGAACCCTCCTCCTCCTCCGCCGCCGCCGCCGCCATCTCTTGCTCCTCCTCCAACGACGACGAGAAGCCACCGCCGTCTCTGGAGGGGAAGGAGCTGCGGCGAGTCGAGGAAGAGGAGCCCGCCGCCGCCGCGCGCCCCGAGAAGCTCACGGAGGGGTCCTCGCGCGCCGCTGAGGCTGAGGAGGAGGAGGAGGTGGTGGAGGATGAGGAGGACGATGACGAGGAAGATGAGGGGAAGGTGGCGGAGGCCATCGACCTCGGCCCCAGGGTCAGCATCAAGGAGCAGCTCGAGATGGACAAGGAGGATGAGAGCCTTCGGAGATGGAAGGAGCAGCTTCTTGGCAGCGTCGATTTGAACTCAGTCGGAGAGTCACTGGAGCCAGACGTGAGGATCACAAGCCTGTGCATCCTGTCACCGGGGCGGCCGGACGTCCTTCTGCCGCTGCCCGTGGAGCCGAGCAACTCCAAGGAACCATGGTTCACCCTCAAGGAAGGCAGCACGTACAGGCTCAAGTTCACCTTCTCTGTCAGCAGCAACATCGTCTCTGGCCTCCGCTACACCAACACCGTATGGAAGGCCGGCATCCGAGTGGACAAAACCAAGGAGATGCTTGGCACGTTCAGCCCTCAGCTGGAGCCGTACACTTACGTGACGCCTGAGGAGACGACCCCCTCGGGAGTATTTGCTCGGGGATCATACTCTGCAAAAACAAAGGTAATGAAATCTGATACCGTGATACACCTCTGAGAAAACCAGAATGTCGATCACTGCTTCCCGCGCCCACTGAACTGAATCAAGTTTCGATTTCGCTCCATCACCAGTTCGTCGATGATGACCGGAAGTGCTACCTGGAGATCAACTACACCTTCGACATCCGCCGGGACTGGCCCTGCAAGTCCTGAGAAGCTGGACACCAAGCAGAAGAGGATGGCAGGCATCTGTGAAAGAGGCATGTTCAGGCTGCCCTGTCCCTGTCTGCTCTGATCTTTTCAGAGTGTAAGGATGATTGGTTACAGCGATTGTTTGTAGACACATAGTAGATTCATTTGTCAGGTCAGCATTGTTAATCTGTGCCTGTCGCTCGAGCTCAGTTGTAAACTTGGAATGCTGGGTGTTCAGAGAATTGTACTACTAGCTCCGTTTTCAAGCAACGG]
[+] EMBL AK060873 [TGTATAACATTTTCGTTTAACACTATACCACCTATTCTTCTCGCACATTCGCACGCTCCTGCATCTCCATCCGTCGCCACCACCTCCACCGCCTCCGCCTCCGCCCCCGCCCCCTCTTCCGCCGCCACCAATGTCTTCGGCGGCCGGTGAACCCTCCTCCTCCTCCGCCGCCGCCGCCGCCATCTCTTGCTCCTCCTCCAACGACGACGAGAAGCCACCGCCGTCTCTGGAGGGGAAGGAGCTGCGGCGAGTCGAGGAAGAGGAGCCCGCCGCCGCCGCGCGCCCCGAGAAGCTCACGGAGGGGTCCTCGCGCGCCGCTGAGGCTGAGGAGGAGGAGGAGGTGGTGGAGGATGAGGAGGACGATGACGAGGAAGATGAGGGGAAGGTGGCGGAGGCCATCGACCTCGGCCCCAGGGTCAGCATCAAGGAGCAGCTCGAGATGGACAAGGAGGATGAGAGCCTTCGGAGATGGAAGGAGCAGCTTCTTGGCAGCGTCGATTTGAACTCAGTCGGAGAGTCACTGGAGCCAGACGTGAGGATCACAAGCCTGTGCATCCTGTCACCGGGGCGGCCGGACGTCCTTCTGCCGCTGCCCGTGGAGCCGAGCAACTCCAAGGAACCATGGTTCACCCTCAAGGAAGGCAGCACGTACAGGCTCAAGTTCACCTTCTCTGTCAGCAGCAACATCGTCTCTGGCCTCCGCTACACCAACACCGTATGGAAGGCCGGCATCCGAGTGGACAAAACCAAGGAGATGCTTGGCACGTTCAGCCCTCAGCTGGAGCCGTACACTTACGTGACGCCTGAGGAGACGACCCCCTCGGGAGTATTTGCTCGGGGATCATACTCTGCAAAAACAAAGGTAATGAAATCTGATACCGTGATACACCTCTGAGAAAACCAGAATGTCGATCACTGCTTCCCGCGCCCACTGAACTGAATCAAGTTTCGATTTCGCTCCATCACCAGTTCGTCGATGATGACCGGAAGTGCTACCTGGAGATCAACTACACCTTCGACATCCGCCGGGACTGGCCCTGCAAGTCCTGAGAAGCTGGACACCAAGCAGAAGAGGATGGCAGGCATCTGTGAAAGAGGCATGTTCAGGCTGCCCTGTCCCTGTCTGCTCTGATCTTTTCAGAGTGTAAGGATGATTGGTTACAGCGATTGTTTGTAGACACATAGTAGATTCATTTGTCAGGTCAGCATTGTTAATCTGTGCCTGTCGCTCGAGCTCAGTTGTAAACTTGGAATGCTGGGTGTTCAGAGAATTGTACTACTAGCTCCGTTTTCAAGCAACGG]
consensusID : consensus_7875#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1255 fasta sequence
[CGCACATTCGCACGCTCCTGCATCTCCATCCGTCGCCACCACCTCCACCGCCTCCGCCTCCGCCCCCGCCCCCTCTTCCGCCGCCACCAATGTCTTCGGCGGCCGGTGAACCCTCCTCCTCCTCCGCCGCCGCCGCCGCCATCTCTTGCTCCTCCTCCAACGACGACGAGAAGCCACCGCCGTCTCTGGAGGGGAAGGAGCTGCGGCGAGTCGAGGAAGAGGAGCCCGCCGCCGCCGCGCGCCCCGAGAAGCTCACGGAGGGGTCCTCGCGCGCCGCTGAGGCTGAGGAGGAGGAGGAGGTGGTGGAGGATGAGGAGGACGATGACGAGGAAGATGAGGGGAAGGTGGCGGAGGCCATCGACCTCGGCCCCAGGGTCAGCATCAAGGAGCAGCTCGAGATGGACAAGGAGGATGAGAGCCTTCGGAGATGGAAGGAGCAGCTTCTTGGCAGCGTCGATTTGAACTCAGTCGGAGAGTCACTGGAGCCAGACGTGAGGATCACAAGCCTGTGCATCCTGTCACCGGGGCGGCCGGACGTCCTTCTGCCGCTGCCCGTGGAGCCGAGCAACTCCAAGGAACCATGGTTCACCCTCAAGGAAGGCAGCACGTACAGGCTCAAGTTCACCTTCTCTGTCAGCAGCAACATCGTCTCTGGCCTCCGCTACACCAACACCGTATGGAAGGCCGGCATCCGAGTGGACAAAACCAAGGAGATGCTTGGCACGTTCAGCCCTCAGCTGGAGCCGTACACTTACGTGACGCCTGAGGAGACGACCCCCTCGGGAGTATTTGCTCGGGGATCATACTCTGCAAAAACAAAGTTCGTCGATGATGACCGGAAGTGCTACCTGGAGATCAACTACACCTTCGACATCCGCCGGGACTGGCCCTGCAAGTCCTGAGAAGCTGGACACCAAGCAGAAGAGGATGGCAGGCATCTGTGAAAGAGGCATGTTCAGGCTGCCCTGTCCCTGTCTGCTCTGATCTTTTCAGAGTGTAAGGATGATTGGTTACAGCGATTGTTTGTAGACACATAGTAGATTCATTTGTCAGGTCAGCATTGTTAATCTGTGCCTGTCGCTCGAGCTCAGTTGTAAACTTGGAATGCTGGGTGTTCAGAGAATTGTACTACTAGCTCCGTTTTCAAGCAACGGTTGCAGGTTGAATTGCCTCGTTGTGTACAACGATAGGCAAATGGCAACGTTACAGGTTTTGAGTTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK065671 [CGCACATTCGCACGCTCCTGCATCTCCATCCGTCGCCACCACCTCCACCGCCTCCGCCTCCGCCCCCGCCCCCTCTTCCGCCGCCACCAATGTCTTCGGCGGCCGGTGAACCCTCCTCCTCCTCCGCCGCCGCCGCCGCCATCTCTTGCTCCTCCTCCAACGACGACGAGAAGCCACCGCCGTCTCTGGAGGGGAAGGAGCTGCGGCGAGTCGAGGAAGAGGAGCCCGCCGCCGCCGCGCGCCCCGAGAAGCTCACGGAGGGGTCCTCGCGCGCCGCTGAGGCTGAGGAGGAGGAGGAGGTGGTGGAGGATGAGGAGGACGATGACGAGGAAGATGAGGGGAAGGTGGCGGAGGCCATCGACCTCGGCCCCAGGGTCAGCATCAAGGAGCAGCTCGAGATGGACAAGGAGGATGAGAGCCTTCGGAGATGGAAGGAGCAGCTTCTTGGCAGCGTCGATTTGAACTCAGTCGGAGAGTCACTGGAGCCAGACGTGAGGATCACAAGCCTGTGCATCCTGTCACCGGGGCGGCCGGACGTCCTTCTGCCGCTGCCCGTGGAGCCGAGCAACTCCAAGGAACCATGGTTCACCCTCAAGGAAGGCAGCACGTACAGGCTCAAGTTCACCTTCTCTGTCAGCAGCAACATCGTCTCTGGCCTCCGCTACACCAACACCGTATGGAAGGCCGGCATCCGAGTGGACAAAACCAAGGAGATGCTTGGCACGTTCAGCCCTCAGCTGGAGCCGTACACTTACGTGACGCCTGAGGAGACGACCCCCTCGGGAGTATTTGCTCGGGGATCATACTCTGCAAAAACAAAGTTCGTCGATGATGACCGGAAGTGCTACCTGGAGATCAACTACACCTTCGACATCCGCCGGGACTGGCCCTGCAAGTCCTGAGAAGCTGGACACCAAGCAGAAGAGGATGGCAGGCATCTGTGAAAGAGGCATGTTCAGGCTGCCCTGTCCCTGTCTGCTCTGATCTTTTCAGAGTGTAAGGATGATTGGTTACAGCGATTGTTTGTAGACACATAGTAGATTCATTTGTCAGGTCAGCATTGTTAATCTGTGCCTGTCGCTCGAGCTCAGTTGTAAACTTGGAATGCTGGGTGTTCAGAGAATTGTACTACTAGCTCCGTTTTCAAGCAACGGTTGCAGGTTGAATTGCCTCGTTGTGTACAACGATA ]
[+] EMBL AU068839 [ ATGTCTTCGGCGGCCGGTGAACCCTCCTCCTCCTCCGCCGCCGCCGCCGCCATCTCTTGCTCCTCCTCCAACGACGACGAGAAGCCACCGCCGTCTCTGGAGGGGAAGGAGCTGCGGCGAGTCGAGGAAGAGGAGCCCGCCGCCGCCGCGCGCCCCGAGAAGCTCACGGAGGGGTCCTCGCGCGCCGCTGAGGCTGAGGAGGAGGAGGAGGTGGTGGAGGATGAGGAGGACGATGACGAGGAAGATGAGGGGAAGGTGGCGGAGGCCATCGACCTCGGCCCCAGGGTCAGCATCAAGGAGCAGCTCGAGATGGACAAGGAGGATGAGAGCCTTCGGAGATGGAAGGAGCAGCTTCTTGGC ]
[+] EMBL AY364312 [ TCCTCCTCCGCCGCCGCCGCCGCCATCTCTTGCTCCTCCTCCAACGACGACGAGAAGCCACCGCCGTCTCTGGAGGGGAAGGAGCTGCGGCGAGTCGAGGAAGAGGAGCCCGCCGCCGCCGCGCGCCCCGAGAAGCTCACGGAGGGGTCCTCGCGCGCCGCTGAGGCTGAGGAGGAGGAGGAGGTGGTGGAGGATGAGGAGGACGATGACGAGGAAGATGAGGGGAAGGTGGCGGAGGCCATCGACCTCGGCCCCAGGGTCAGCATCAAGGAGCAGCTCGAGATGGACAAGGAGGATGAGAGCCTTCGGAGATGGAAGGAGCAGCTTCTTGGCAGCGTCGATTTGAACTCAGTCGGAGAGTCACTGGAGCCAGACGTGAGGATCACAAGCCTGTGCATCCTGTCACCGGGGCGGACGGACGTCCTTCTGCCGTTGCCCGTGGAGCCGAGCAACTCCAAGGAACCATGGTTCACCCTCAAGGAAGGCAGCACGTACAGGCTCAAGTTCACCTTCTCTGTCAGCAGCAACATCGTCTCTGGCCTCCGCTACACCAACACCGTATGGAAGGCCGGCATCCGAGTGGACAAAACCAAGGAGATGCTTGGCACGTTCAGCCCTCAGCTGGAGCCGTACACTTACGTGACGCCTGAGGAGACGACCCCCTCGGGAGTATTTGCTCGGGGATCATACTCTGCAAAAACAAAGTTCGTCGATGATGACCGGAAGTGCTACCTGGAGATCAACTACACCTTCGACATCCGCCGGGACTGGCCCTGCAAGTCCTGAGAAGCTGGACACCAAGCAGAAGAGGATGGCAGGCATCTGTGAAAGAGGCATGTTCAGGCTGCCCTGTCCCTGTCTGCTCTGATCTTTTCAGAGTGTAAGGATGATTGGTTACAGCGATTGTTTGTAGACACATAGTAGATTCATTTGTCAGGTCAGCATTGTTAATCTGTGCCTGTCGCTCGAGCTCAGTTGTAAACTTGGAATGCTGGGTGTTCAGAGAATTGTANTACTAGCTCCGTTTTCAAGCAACGGTTGCAGGTTGAATTGCCTCGTTGTGTACAACGATAGGCAAATGGCAACGTTACAGGTTTTGAGTTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CA754097 [ gcacgagGACGCCTGAGGAGACGACCCCCTCGGGAGTATTTGCTCGGGGATCATACTCTGCAAAAACAAAGTTCGTCGATGATGACCGGAAGTGCTACCTGGAGATCAACTACACCTTCGACATCCGCCGGGACTGGCCCTGCAAGTCCTGAGAAGCTGGACACCAAGCAGAAGAGGATGGCAGGCATCTGTGATTTTGGCATGTTCAGGCTGCCCTGTCCCTGTCTGCTCTGATCTTTTCAGAGTGTAAGGATGATTGGTTACAGCGATTGTTTGTAGACACATAGTAGATTCATTTGTCAGGTCAGCATTGTTAATCTGTGCCTGTCGCTCGAGCTCAATTGTAAACTTGGAATGCTGGGTGTTCAGAGAATTGTACTACTAGCTCCGTTTTCgaaaaaaa ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7875#0 TGTATAACATTTTCGTTTAACACTATACCACCTATTCTTCTCGCACATTCGCACGCTCCT 60
consensus_7875#1 -----------------------------------------CGCACATTCGCACGCTCCT 19
*******************
consensus_7875#0 GCATCTCCATCCGTCGCCACCACCTCCACCGCCTCCGCCTCCGCCCCCGCCCCCTCTTCC 120
consensus_7875#1 GCATCTCCATCCGTCGCCACCACCTCCACCGCCTCCGCCTCCGCCCCCGCCCCCTCTTCC 79
************************************************************
consensus_7875#0 GCCGCCACCAATGTCTTCGGCGGCCGGTGAACCCTCCTCCTCCTCCGCCGCCGCCGCCGC 180
consensus_7875#1 GCCGCCACCAATGTCTTCGGCGGCCGGTGAACCCTCCTCCTCCTCCGCCGCCGCCGCCGC 139
************************************************************
consensus_7875#0 CATCTCTTGCTCCTCCTCCAACGACGACGAGAAGCCACCGCCGTCTCTGGAGGGGAAGGA 240
consensus_7875#1 CATCTCTTGCTCCTCCTCCAACGACGACGAGAAGCCACCGCCGTCTCTGGAGGGGAAGGA 199
************************************************************
consensus_7875#0 GCTGCGGCGAGTCGAGGAAGAGGAGCCCGCCGCCGCCGCGCGCCCCGAGAAGCTCACGGA 300
consensus_7875#1 GCTGCGGCGAGTCGAGGAAGAGGAGCCCGCCGCCGCCGCGCGCCCCGAGAAGCTCACGGA 259
************************************************************
consensus_7875#0 GGGGTCCTCGCGCGCCGCTGAGGCTGAGGAGGAGGAGGAGGTGGTGGAGGATGAGGAGGA 360
consensus_7875#1 GGGGTCCTCGCGCGCCGCTGAGGCTGAGGAGGAGGAGGAGGTGGTGGAGGATGAGGAGGA 319
************************************************************
consensus_7875#0 CGATGACGAGGAAGATGAGGGGAAGGTGGCGGAGGCCATCGACCTCGGCCCCAGGGTCAG 420
consensus_7875#1 CGATGACGAGGAAGATGAGGGGAAGGTGGCGGAGGCCATCGACCTCGGCCCCAGGGTCAG 379
************************************************************
consensus_7875#0 CATCAAGGAGCAGCTCGAGATGGACAAGGAGGATGAGAGCCTTCGGAGATGGAAGGAGCA 480
consensus_7875#1 CATCAAGGAGCAGCTCGAGATGGACAAGGAGGATGAGAGCCTTCGGAGATGGAAGGAGCA 439
************************************************************
consensus_7875#0 GCTTCTTGGCAGCGTCGATTTGAACTCAGTCGGAGAGTCACTGGAGCCAGACGTGAGGAT 540
consensus_7875#1 GCTTCTTGGCAGCGTCGATTTGAACTCAGTCGGAGAGTCACTGGAGCCAGACGTGAGGAT 499
************************************************************
consensus_7875#0 CACAAGCCTGTGCATCCTGTCACCGGGGCGGCCGGACGTCCTTCTGCCGCTGCCCGTGGA 600
consensus_7875#1 CACAAGCCTGTGCATCCTGTCACCGGGGCGGCCGGACGTCCTTCTGCCGCTGCCCGTGGA 559
************************************************************
consensus_7875#0 GCCGAGCAACTCCAAGGAACCATGGTTCACCCTCAAGGAAGGCAGCACGTACAGGCTCAA 660
consensus_7875#1 GCCGAGCAACTCCAAGGAACCATGGTTCACCCTCAAGGAAGGCAGCACGTACAGGCTCAA 619
************************************************************
consensus_7875#0 GTTCACCTTCTCTGTCAGCAGCAACATCGTCTCTGGCCTCCGCTACACCAACACCGTATG 720
consensus_7875#1 GTTCACCTTCTCTGTCAGCAGCAACATCGTCTCTGGCCTCCGCTACACCAACACCGTATG 679
************************************************************
consensus_7875#0 GAAGGCCGGCATCCGAGTGGACAAAACCAAGGAGATGCTTGGCACGTTCAGCCCTCAGCT 780
consensus_7875#1 GAAGGCCGGCATCCGAGTGGACAAAACCAAGGAGATGCTTGGCACGTTCAGCCCTCAGCT 739
************************************************************
consensus_7875#0 GGAGCCGTACACTTACGTGACGCCTGAGGAGACGACCCCCTCGGGAGTATTTGCTCGGGG 840
consensus_7875#1 GGAGCCGTACACTTACGTGACGCCTGAGGAGACGACCCCCTCGGGAGTATTTGCTCGGGG 799
************************************************************
consensus_7875#0 ATCATACTCTGCAAAAACAAAGGTAATGAAATCTGATACCGTGATACACCTCTGAGAAAA 900
consensus_7875#1 ATCATACTCTGCAAAAACAAAG-------------------------------------- 821
**********************
consensus_7875#0 CCAGAATGTCGATCACTGCTTCCCGCGCCCACTGAACTGAATCAAGTTTCGATTTCGCTC 960
consensus_7875#1 ------------------------------------------------------------
consensus_7875#0 CATCACCAGTTCGTCGATGATGACCGGAAGTGCTACCTGGAGATCAACTACACCTTCGAC 1020
consensus_7875#1 ---------TTCGTCGATGATGACCGGAAGTGCTACCTGGAGATCAACTACACCTTCGAC 872
***************************************************
consensus_7875#0 ATCCGCCGGGACTGGCCCTGCAAGTCCTGAGAAGCTGGACACCAAGCAGAAGAGGATGGC 1080
consensus_7875#1 ATCCGCCGGGACTGGCCCTGCAAGTCCTGAGAAGCTGGACACCAAGCAGAAGAGGATGGC 932
************************************************************
consensus_7875#0 AGGCATCTGTGAAAGAGGCATGTTCAGGCTGCCCTGTCCCTGTCTGCTCTGATCTTTTCA 1140
consensus_7875#1 AGGCATCTGTGAAAGAGGCATGTTCAGGCTGCCCTGTCCCTGTCTGCTCTGATCTTTTCA 992
************************************************************
consensus_7875#0 GAGTGTAAGGATGATTGGTTACAGCGATTGTTTGTAGACACATAGTAGATTCATTTGTCA 1200
consensus_7875#1 GAGTGTAAGGATGATTGGTTACAGCGATTGTTTGTAGACACATAGTAGATTCATTTGTCA 1052
************************************************************
consensus_7875#0 GGTCAGCATTGTTAATCTGTGCCTGTCGCTCGAGCTCAGTTGTAAACTTGGAATGCTGGG 1260
consensus_7875#1 GGTCAGCATTGTTAATCTGTGCCTGTCGCTCGAGCTCAGTTGTAAACTTGGAATGCTGGG 1112
************************************************************
consensus_7875#0 TGTTCAGAGAATTGTACTACTAGCTCCGTTTTCAAGCAACGG------------------ 1302
consensus_7875#1 TGTTCAGAGAATTGTACTACTAGCTCCGTTTTCAAGCAACGGTTGCAGGTTGAATTGCCT 1172
******************************************
consensus_7875#0 ------------------------------------------------------------
consensus_7875#1 CGTTGTGTACAACGATAGGCAAATGGCAACGTTACAGGTTTTGAGTTCTCAAAAAAAAAA 1232
consensus_7875#0 -----------------------
consensus_7875#1 AAAAAAAAAAAAAAAAAAAAAAA 1255
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||