These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_788#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 532 fasta sequence [GAAAGANGTCACGTACTTGCNGCGGGTGACCGAGGTCGTCTGCGCCGGCGCGCGCGTGGCGCGGCGCGGGTACTGCGAGGTCGGGGCCGGCTCCGCGCCCGTCTCCGGGCAGGCGCTGCTGCTCGTCCACATTGTCTGGCTCTTCGTGCTCGGCGCCGCCGTCCTCCTTGGTTTCCTCTGATGTNNGCGCGNCACCCGCTACACCTCCNCCCTTCCCCCTCTGTNGTTGATTTCTCCACATCTATCCGTTTCGCGATTATTTNTCTAGGTTGGTATTAGTGCTTTTTTTTTTTATCTGAGGGATGTCGTTGTNACAATTTGTCGTAAACTTGTAANTTTGGAGGATTTCGTCGAGAGATGTCACACGATNTCNTCNANAGATGTCNCACAATTCTNTCANANATCTGTTTGATTGGTCTNGGCTCCATCTCATANCTGAATTGTGCANATNGGTCCTGATCTGTTANCTAGANATCATGTTTTGACANTCTGTNAATGTTTNCTNACAATTGCNTCNATCNCTNTNCATNGT] [+] EMBL AA751570 [GAAAGANGTCACGTACTTGCNGCGGGTGACCGAGGTCGTCTGCGCCGGCGCGCGCGTGGCGCGGCGCGGGTACTGCGAGGTCGGGGCCGGCTCCGCGCCCGTCTCCGGGCAGGCGCTGCTGCTCGTCCACATTGTCTGGCTCTTCGTGCTCGGCGCCGCCGTCCTCCTTGGTTTCCTCTGATGTNNGCGCGNCACCCGCTACACCTCCNCCCTTCCCCCTCTGTNGTTGATTTCTCCACATCTATCCGTTTCGCGATTATTTNTCTAGGTTGGTATTAGTGCTTTTTTTTTTTATCTGAGGGATGTCGTTGTNACAATTTGTCGTAAACTTGTAANTTTGGAGGATTTCGTCGAGAGATGTCACACGATNTCNTCNANAGATGTCNCACAATTCTNTCANANATCTGTTTGATTGGTCTNGGCTCCATCTCATANCTGAATTGTGCANATNGGTCCTGATCTGTTANCTAGANATCATGTTTTGACANTCTGTNAATGTTTNCTNACAATTGCNTCNATCNCTNTNCATNGT] consensusID : consensus_788#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 401 fasta sequence [CTCGCTCCTCTTCGCCCAAACCCTAGCCTCGTCCTCCGCGGAGGCCGAGGTCTCCGACCCCTGCGCCGCCCCCGTGTCGGACGGGGGCAGCGAGGCCCAGCTTTGCCCCGTGCGGTGCTTCCGGCCGGACCCGGTCTGCGGCGCCGACGGGGTCACGTACTGGTGCGGGTGCCCCGAGGCCGCCTGCGCCGGCGCGCGCGTGGCGCGGCGCGGGTACTGCGAGGTCGGGGCCGGCTCCGCGCCCGTCTCCGGGCAGGCGCTGCTGCTCGTCCACATCGTCTGGCTCTTCGTGCTCGGGGCCGCCGTCCTCCTTGGCTTCCTCTGATGTGCGCGCGCCACCCGTTACACCTCCTCCCTCCCCCCTCTGTAGTTGATTCTTCACATTTATCCGTTTCGCGATT] [+] EMBL CA755453 [CTCGCTCCTCTTCGCCCAAACCCTAGCCTCGTCCTCCGCGGAGGCCGAGGTCTCCGACCCCTGCGCCGCCCCCGTGTCGGACGGGGGCAGCGAGGCCCAGCTTTGCCCCGTGCGGTGCTTCCGGCCGGACCCGGTCTGCGGCGCCGACGGGGTCACGTACTGGTGCGGGTGCCCCGAGGCCGCCTGCGCCGGCGCGCGCGTGGCGCGGCGCGGGTACTGCGAGGTCGGGGCCGGCTCCGCGCCCGTCTCCGGGCAGGCGCTGCTGCTCGTCCACATCGTCTGGCTCTTCGTGCTCGGGGCCGCCGTCCTCCTTGGCTTCCTCTGATGTGCGCGCGCCACCCGTTACACCTCCTCCCTCCCCCCTCTGTAGTTGATTCTTCACATTTATCCGTTTCGCGATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_788#0 ------------------------------------------------------------ consensus_788#1 CTCGCTCCTCTTCGCCCAAACCCTAGCCTCGTCCTCCGCGGAGGCCGAGGTCTCCGACCC 60 consensus_788#0 ------------------------------------------------------------ consensus_788#1 CTGCGCCGCCCCCGTGTCGGACGGGGGCAGCGAGGCCCAGCTTTGCCCCGTGCGGTGCTT 120 consensus_788#0 ------------------------GAAAGANGTCACGTACTTGCNGCGGGTGACC-GAGG 35 consensus_788#1 CCGGCCGGACCCGGTCTGCGGCGCCGACGGGGTCACGTACT-GGTGCGGGTGCCCCGAGG 179 * * ********** * ******* ** **** consensus_788#0 TCGTCTGCGCCGGCGCGCGCGTGGCGCGGCGCGGGTACTGCGAGGTCGGGGCCGGCTCCG 95 consensus_788#1 CCGCCTGCGCCGGCGCGCGCGTGGCGCGGCGCGGGTACTGCGAGGTCGGGGCCGGCTCCG 239 ** ******************************************************** consensus_788#0 CGCCCGTCTCCGGGCAGGCGCTGCTGCTCGTCCACATTGTCTGGCTCTTCGTGCTCGGCG 155 consensus_788#1 CGCCCGTCTCCGGGCAGGCGCTGCTGCTCGTCCACATCGTCTGGCTCTTCGTGCTCGGGG 299 ************************************* ******************** * consensus_788#0 CCGCCGTCCTCCTTGGTTTCCTCTGATGTNNGCGCGNCACCCGCTACACCTCCNCCCTTC 215 consensus_788#1 CCGCCGTCCTCCTTGGCTTCCTCTGATGTGCGCGCGCCACCCGTTACACCTCCTCCCTCC 359 **************** ************ ***** ****** ********* **** * consensus_788#0 CCCCTCTGTNGTTGATTTCTCCACATCTATCCGTTTCGCGATTATTTNTCTAGGTTGGTA 275 consensus_788#1 CCCCTCTGTAGTTGATT-CTTCACATTTATCCGTTTCGCGATT----------------- 401 ********* ******* ** ***** **************** consensus_788#0 TTAGTGCTTTTTTTTTTTATCTGAGGGATGTCGTTGTNACAATTTGTCGTAAACTTGTAA 335 consensus_788#1 ------------------------------------------------------------ consensus_788#0 NTTTGGAGGATTTCGTCGAGAGATGTCACACGATNTCNTCNANAGATGTCNCACAATTCT 395 consensus_788#1 ------------------------------------------------------------ consensus_788#0 NTCANANATCTGTTTGATTGGTCTNGGCTCCATCTCATANCTGAATTGTGCANATNGGTC 455 consensus_788#1 ------------------------------------------------------------ consensus_788#0 CTGATCTGTTANCTAGANATCATGTTTTGACANTCTGTNAATGTTTNCTNACAATTGCNT 515 consensus_788#1 ------------------------------------------------------------ consensus_788#0 CNATCNCTNTNCATNGT 532 consensus_788#1 ----------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||