cluster # 788

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Oryza sativa
cluster # 788 cluster # 788 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_788#0 length = 532 sequences # 1

consensus_788#1 length = 401 sequences # 1

consensusID : consensus_788#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 532
fasta sequence

                              [GAAAGANGTCACGTACTTGCNGCGGGTGACCGAGGTCGTCTGCGCCGGCGCGCGCGTGGCGCGGCGCGGGTACTGCGAGGTCGGGGCCGGCTCCGCGCCCGTCTCCGGGCAGGCGCTGCTGCTCGTCCACATTGTCTGGCTCTTCGTGCTCGGCGCCGCCGTCCTCCTTGGTTTCCTCTGATGTNNGCGCGNCACCCGCTACACCTCCNCCCTTCCCCCTCTGTNGTTGATTTCTCCACATCTATCCGTTTCGCGATTATTTNTCTAGGTTGGTATTAGTGCTTTTTTTTTTTATCTGAGGGATGTCGTTGTNACAATTTGTCGTAAACTTGTAANTTTGGAGGATTTCGTCGAGAGATGTCACACGATNTCNTCNANAGATGTCNCACAATTCTNTCANANATCTGTTTGATTGGTCTNGGCTCCATCTCATANCTGAATTGTGCANATNGGTCCTGATCTGTTANCTAGANATCATGTTTTGACANTCTGTNAATGTTTNCTNACAATTGCNTCNATCNCTNTNCATNGT]

[+] EMBL AA751570             [GAAAGANGTCACGTACTTGCNGCGGGTGACCGAGGTCGTCTGCGCCGGCGCGCGCGTGGCGCGGCGCGGGTACTGCGAGGTCGGGGCCGGCTCCGCGCCCGTCTCCGGGCAGGCGCTGCTGCTCGTCCACATTGTCTGGCTCTTCGTGCTCGGCGCCGCCGTCCTCCTTGGTTTCCTCTGATGTNNGCGCGNCACCCGCTACACCTCCNCCCTTCCCCCTCTGTNGTTGATTTCTCCACATCTATCCGTTTCGCGATTATTTNTCTAGGTTGGTATTAGTGCTTTTTTTTTTTATCTGAGGGATGTCGTTGTNACAATTTGTCGTAAACTTGTAANTTTGGAGGATTTCGTCGAGAGATGTCACACGATNTCNTCNANAGATGTCNCACAATTCTNTCANANATCTGTTTGATTGGTCTNGGCTCCATCTCATANCTGAATTGTGCANATNGGTCCTGATCTGTTANCTAGANATCATGTTTTGACANTCTGTNAATGTTTNCTNACAATTGCNTCNATCNCTNTNCATNGT]




>consensus_788#0
GAAAGANGTCACGTACTTGCNGCGGGTGACCGAGGTCGTCTGCGCCGGCGCGCGCGTGGC
GCGGCGCGGGTACTGCGAGGTCGGGGCCGGCTCCGCGCCCGTCTCCGGGCAGGCGCTGCT
GCTCGTCCACATTGTCTGGCTCTTCGTGCTCGGCGCCGCCGTCCTCCTTGGTTTCCTCTG
ATGTNNGCGCGNCACCCGCTACACCTCCNCCCTTCCCCCTCTGTNGTTGATTTCTCCACA
TCTATCCGTTTCGCGATTATTTNTCTAGGTTGGTATTAGTGCTTTTTTTTTTTATCTGAG
GGATGTCGTTGTNACAATTTGTCGTAAACTTGTAANTTTGGAGGATTTCGTCGAGAGATG
TCACACGATNTCNTCNANAGATGTCNCACAATTCTNTCANANATCTGTTTGATTGGTCTN
GGCTCCATCTCATANCTGAATTGTGCANATNGGTCCTGATCTGTTANCTAGANATCATGT
TTTGACANTCTGTNAATGTTTNCTNACAATTGCNTCNATCNCTNTNCATNGT

consensusID : consensus_788#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 401
fasta sequence

                              [CTCGCTCCTCTTCGCCCAAACCCTAGCCTCGTCCTCCGCGGAGGCCGAGGTCTCCGACCCCTGCGCCGCCCCCGTGTCGGACGGGGGCAGCGAGGCCCAGCTTTGCCCCGTGCGGTGCTTCCGGCCGGACCCGGTCTGCGGCGCCGACGGGGTCACGTACTGGTGCGGGTGCCCCGAGGCCGCCTGCGCCGGCGCGCGCGTGGCGCGGCGCGGGTACTGCGAGGTCGGGGCCGGCTCCGCGCCCGTCTCCGGGCAGGCGCTGCTGCTCGTCCACATCGTCTGGCTCTTCGTGCTCGGGGCCGCCGTCCTCCTTGGCTTCCTCTGATGTGCGCGCGCCACCCGTTACACCTCCTCCCTCCCCCCTCTGTAGTTGATTCTTCACATTTATCCGTTTCGCGATT]

[+] EMBL CA755453             [CTCGCTCCTCTTCGCCCAAACCCTAGCCTCGTCCTCCGCGGAGGCCGAGGTCTCCGACCCCTGCGCCGCCCCCGTGTCGGACGGGGGCAGCGAGGCCCAGCTTTGCCCCGTGCGGTGCTTCCGGCCGGACCCGGTCTGCGGCGCCGACGGGGTCACGTACTGGTGCGGGTGCCCCGAGGCCGCCTGCGCCGGCGCGCGCGTGGCGCGGCGCGGGTACTGCGAGGTCGGGGCCGGCTCCGCGCCCGTCTCCGGGCAGGCGCTGCTGCTCGTCCACATCGTCTGGCTCTTCGTGCTCGGGGCCGCCGTCCTCCTTGGCTTCCTCTGATGTGCGCGCGCCACCCGTTACACCTCCTCCCTCCCCCCTCTGTAGTTGATTCTTCACATTTATCCGTTTCGCGATT]




>consensus_788#1
CTCGCTCCTCTTCGCCCAAACCCTAGCCTCGTCCTCCGCGGAGGCCGAGGTCTCCGACCC
CTGCGCCGCCCCCGTGTCGGACGGGGGCAGCGAGGCCCAGCTTTGCCCCGTGCGGTGCTT
CCGGCCGGACCCGGTCTGCGGCGCCGACGGGGTCACGTACTGGTGCGGGTGCCCCGAGGC
CGCCTGCGCCGGCGCGCGCGTGGCGCGGCGCGGGTACTGCGAGGTCGGGGCCGGCTCCGC
GCCCGTCTCCGGGCAGGCGCTGCTGCTCGTCCACATCGTCTGGCTCTTCGTGCTCGGGGC
CGCCGTCCTCCTTGGCTTCCTCTGATGTGCGCGCGCCACCCGTTACACCTCCTCCCTCCC
CCCTCTGTAGTTGATTCTTCACATTTATCCGTTTCGCGATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_788#0      ------------------------------------------------------------
consensus_788#1      CTCGCTCCTCTTCGCCCAAACCCTAGCCTCGTCCTCCGCGGAGGCCGAGGTCTCCGACCC 60
                                                                                 

consensus_788#0      ------------------------------------------------------------
consensus_788#1      CTGCGCCGCCCCCGTGTCGGACGGGGGCAGCGAGGCCCAGCTTTGCCCCGTGCGGTGCTT 120
                                                                                 

consensus_788#0      ------------------------GAAAGANGTCACGTACTTGCNGCGGGTGACC-GAGG 35
consensus_788#1      CCGGCCGGACCCGGTCTGCGGCGCCGACGGGGTCACGTACT-GGTGCGGGTGCCCCGAGG 179
                                               * *  ********** *  ******* ** ****

consensus_788#0      TCGTCTGCGCCGGCGCGCGCGTGGCGCGGCGCGGGTACTGCGAGGTCGGGGCCGGCTCCG 95
consensus_788#1      CCGCCTGCGCCGGCGCGCGCGTGGCGCGGCGCGGGTACTGCGAGGTCGGGGCCGGCTCCG 239
                      ** ********************************************************

consensus_788#0      CGCCCGTCTCCGGGCAGGCGCTGCTGCTCGTCCACATTGTCTGGCTCTTCGTGCTCGGCG 155
consensus_788#1      CGCCCGTCTCCGGGCAGGCGCTGCTGCTCGTCCACATCGTCTGGCTCTTCGTGCTCGGGG 299
                     ************************************* ******************** *

consensus_788#0      CCGCCGTCCTCCTTGGTTTCCTCTGATGTNNGCGCGNCACCCGCTACACCTCCNCCCTTC 215
consensus_788#1      CCGCCGTCCTCCTTGGCTTCCTCTGATGTGCGCGCGCCACCCGTTACACCTCCTCCCTCC 359
                     **************** ************  ***** ****** ********* **** *

consensus_788#0      CCCCTCTGTNGTTGATTTCTCCACATCTATCCGTTTCGCGATTATTTNTCTAGGTTGGTA 275
consensus_788#1      CCCCTCTGTAGTTGATT-CTTCACATTTATCCGTTTCGCGATT----------------- 401
                     ********* ******* ** ***** ****************                 

consensus_788#0      TTAGTGCTTTTTTTTTTTATCTGAGGGATGTCGTTGTNACAATTTGTCGTAAACTTGTAA 335
consensus_788#1      ------------------------------------------------------------
                                                                                 

consensus_788#0      NTTTGGAGGATTTCGTCGAGAGATGTCACACGATNTCNTCNANAGATGTCNCACAATTCT 395
consensus_788#1      ------------------------------------------------------------
                                                                                 

consensus_788#0      NTCANANATCTGTTTGATTGGTCTNGGCTCCATCTCATANCTGAATTGTGCANATNGGTC 455
consensus_788#1      ------------------------------------------------------------
                                                                                 

consensus_788#0      CTGATCTGTTANCTAGANATCATGTTTTGACANTCTGTNAATGTTTNCTNACAATTGCNT 515
consensus_788#1      ------------------------------------------------------------
                                                                                 

consensus_788#0      CNATCNCTNTNCATNGT 532
consensus_788#1      -----------------