cluster # 7880

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 7880 cluster # 7880 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7880#0 length = 853 sequences # 2

consensus_7880#1 length = 814 sequences # 3

consensusID : consensus_7880#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 853
fasta sequence

                              [GGAGAATCCGCCTGCCATGGATTATTACTACCCCATGGAGGAGGAGGAGGAGGTGCACGAGCGCCCAAGATTCCGGCGCCCGGTCCACCCGTGGCAGTGGCACCATTGGCAGAATCTCCTCGGCCTCCTCTCGTCGTCGTCTCCGTCTCCGGCGACGGCGGCGGCGGCGCAGAGGTGCAGCCATGTCAGCTGGGAGGAGACCGCCGCCGCGCACCTCTACTCCGCCAGCCTCCCCGGTAATCAATCAAAAACATCATCTCATCGAATCTTTTGGTGCTTTGATTTCCTTGATTGATACGAAGAGAGGAATGGTGGGGTTAGGTGTGAGGAAGGAGGAGATCAGGGTGGAGGTGGAGGACGCGATGTACCTCGTCATCCGCACCGAGCTTGATGACGGTGGCGATGGCGACGGCGGAGGCGGCGGTGGCCGGAGGAGCTTCGCGAGGAAGTTCCGGCTGCCGGCGATGGTGGACGCCGACGGCATCTCGGCGGAGTACACCCACGGCGTGCTCAGGGTAACCGTCCCGAGGCTGCATACGCGGGCTCGCCCCGTCGTCAACCTCGCCGGCGGCGGCGGCGGTGGCGGTGGCCCGGCCTGCGACCCCGTCGCCCGAGCAGCCTGATTAGTGATTCGATATCAATCAAGAAAATTACTTAATTACTTATTTAAGTTGCACTGTGAGCTTAGGATTGGGGAAGTAATAGCAGTATAGTGAACTGTACAATTCTCAGGCATTTCAGAATTTCAGAAAATTGCCAAATTGGCAGTGCCTGTTCGTTATCTTGTAGTATCAGTTGTTTTTTGTGCTATAGTACTCTATTTCTGTTCTGTCGCAGTAAAACGTGAAGGATT]

[+] EMBL AK063798             [GGAGAATCCGCCTGCCATGGATTATTACTACCCCATGGAGGAGGAGGAGGAGGTGCACGAGCGCCCAAGATTCCGGCGCCCGGTCCACCCGTGGCAGTGGCACCATTGGCAGAATCTCCTCGGCCTCCTCTCGTCGTCGTCTCCGTCTCCGGCGACGGCGGCGGCGGCGCAGAGGTGCAGCCATGTCAGCTGGGAGGAGACCGCCGCCGCGCACCTCTACTCCGCCAGCCTCCCCGGTAATCAATCAAAAACATCATCTCATCGAATCTTTTGGTGCTTTGATTTCCTTGATTGATACGAAGAGAGGAATGGTGGGGTTAGGTGTGAGGAAGGAGGAGATCAGGGTGGAGGTGGAGGACGCGATGTACCTCGTCATCCGCACCGAGCTTGATGACGGTGGCGATGGCGACGGCGGAGGCGGCGGTGGCCGGAGGAGCTTCGCGAGGAAGTTCCGGCTGCCGGCGATGGTGGACGCCGACGGCATCTCGGCGGAGTACACCCACGGCGTGCTCAGGGTAACCGTCCCGAGGCTGCATACGCGGGCTCGCCCCGTCGTCAACCTCGCCGGCGGCGGCGGCGGTGGCGGTGGCCCGGCCTGCGACCCCGTCGCCCGAGCAGCCTGATTAGTGATTCGATATCAATCAAGAAAATTACTTAATTACTTATTTAAGTTGCACTGTGAGCTTAGGATTGGGGAAGTAATAGCAGTATAGTGAACTGTACAATTCTCAGGCATTTCAGAATTTCAGAAAATTGCCAAATTGGCAGTGCCTGTTCGTTATCTTGTAGTATCAGTTGTTTTTTGTGCTATAGTACTCTATTTCTGTTCTGTCGCAGTAAAACGTGAAGGATT]
[+] EMBL OSR24651A            [                                                                                                                                                                                                                                                                                                                                                      GGGTGGAGGTGGAGGACGCGATGTACCTCGTCATCCGCACCGAGCTTGATGACGGTGGCGATGGCGACGGCGGAGGCGGCGGTGGCCGGAGGAGCTTCGCGAGGAAGTTCCGGCTGCCGGCGATGGTGGACGCCGACGGCATCTCGGCGGAGTACACCCACGGCGTGCTCAGGGTAACCGTCCCGAGGNTGCATACGCGGGCTCGCCCCNTCGTCAACCTCGCCGGCGG NGCGGCGGTGGCGGTGGCCCGGCCTACNACCCCGTCGNCCGAGCAGCCTNATTAGTGATTCGATATCAATCAAGAAAATTACTTAATTACTTATTTAAGTTGCACTGTGAG                                                                                                                                                                          ]




>consensus_7880#0
GGAGAATCCGCCTGCCATGGATTATTACTACCCCATGGAGGAGGAGGAGGAGGTGCACGA
GCGCCCAAGATTCCGGCGCCCGGTCCACCCGTGGCAGTGGCACCATTGGCAGAATCTCCT
CGGCCTCCTCTCGTCGTCGTCTCCGTCTCCGGCGACGGCGGCGGCGGCGCAGAGGTGCAG
CCATGTCAGCTGGGAGGAGACCGCCGCCGCGCACCTCTACTCCGCCAGCCTCCCCGGTAA
TCAATCAAAAACATCATCTCATCGAATCTTTTGGTGCTTTGATTTCCTTGATTGATACGA
AGAGAGGAATGGTGGGGTTAGGTGTGAGGAAGGAGGAGATCAGGGTGGAGGTGGAGGACG
CGATGTACCTCGTCATCCGCACCGAGCTTGATGACGGTGGCGATGGCGACGGCGGAGGCG
GCGGTGGCCGGAGGAGCTTCGCGAGGAAGTTCCGGCTGCCGGCGATGGTGGACGCCGACG
GCATCTCGGCGGAGTACACCCACGGCGTGCTCAGGGTAACCGTCCCGAGGCTGCATACGC
GGGCTCGCCCCGTCGTCAACCTCGCCGGCGGCGGCGGCGGTGGCGGTGGCCCGGCCTGCG
ACCCCGTCGCCCGAGCAGCCTGATTAGTGATTCGATATCAATCAAGAAAATTACTTAATT
ACTTATTTAAGTTGCACTGTGAGCTTAGGATTGGGGAAGTAATAGCAGTATAGTGAACTG
TACAATTCTCAGGCATTTCAGAATTTCAGAAAATTGCCAAATTGGCAGTGCCTGTTCGTT
ATCTTGTAGTATCAGTTGTTTTTTGTGCTATAGTACTCTATTTCTGTTCTGTCGCAGTAA
AACGTGAAGGATT

consensusID : consensus_7880#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 814
fasta sequence

                              [TCTCCGGCTATTTATGCAGCCGGAGAGTGACCGGGATGCGGACGCCGGCCGGAGAATCCGCCTGCCATGGATTATTACTACCCCATGGAGGAGGAGGAGGAGGTGCACGAGCGCCCAAGATTCCGGCGCCCGGTCCACCCGTGGCAGTGGCACCATTGGCAGAATCTCCTCGGCCTCCTCTCGTCGTCGTCTCCGTCTCCGGCGACGGCGGCGGCGGCGCAGAGGTGCAGCCATGTCAGCTGGGAGGAGACCGCCGCCGCGCACCTCTACTCCGCCAGCCTCCCCGGTGTGAGGAAGGAGGAGATCAGGGTGGAGGTGGAGGACGCGATGTACCTCGTCATCCGCACCGAGCTTGATGACGGTGGCGATGGCGACGGCGGAGGCGGCGGTGGCCGGAGGAGCTTCGCGAGGAAGTTCCGGCTGCCGGCGATGGTGGACGCCGACGGCATCTCGGCGGAGTACA-CCACGGCGTGCTCAGGGTAACCGTCCCGAGGCTGCATACGCGGGCTCGCCCCGTCGTCAACCTCGCCGGCGGCGGC-GGCGGTGGCGGTGGCCC-GGCCTGCGACCCCGTCGCCCGAGCAGCCTGATTAGTGATTCGATATCAATCAAGA-AAATTACTTAATT-ACTTATTT-AAGTTGCACTGTGAGCTTAGGATTGGGGAAGTAATAGCAGTATAGTGAACTGTACAATTCTCAGGCATTTCAGAATTTCAGAAAATTGCCAAATTGGCAGTGCCTGTTCGTTATCTTGTAGTATCAGTTGTTTTTTGTGCTATAGTACTCTATTTCTGTTCTGTCGCAGTAAAACGTGAAGG]

[+] EMBL AK071773             [TCTCCGGCTATTTATGCAGCCGGAGAGTGACCGGGATGCGGACGCCGGCCGGAGAATCCGCCTGCCATGGATTATTACTACCCCATGGAGGAGGAGGAGGAGGTGCACGAGCGCCCAAGATTCCGGCGCCCGGTCCACCCGTGGCAGTGGCACCATTGGCAGAATCTCCTCGGCCTCCTCTCGTCGTCGTCTCCGTCTCCGGCGACGGCGGCGGCGGCGCAGAGGTGCAGCCATGTCAGCTGGGAGGAGACCGCCGCCGCGCACCTCTACTCCGCCAGCCTCCCCGGTGTGAGGAAGGAGGAGATCAGGGTGGAGGTGGAGGACGCGATGTACCTCGTCATCCGCACCGAGCTTGATGACGGTGGCGATGGCGACGGCGGAGGCGGCGGTGGCCGGAGGAGCTTCGCGAGGAAGTTCCGGCTGCCGGCGATGGTGGACGCCGACGGCATCTCGGCGGAGTACA CCACGGCGTGCTCAGGGTAACCGTCCCGAGGCTGCATACGCGGGCTCGCCCCGTCGTCAACCTCGCCGGCGGCGGC GGCGGTGGCGGTGGCCC GGCCTGCGACCCCGTCGCCCGAGCAGCCTGATTAGTGATTCGATATCAATCAAGA AAATTACTTAATT ACTTATTT AAGTTGCACTGTGAGCTTAGGATTGGGGAAGTAATAGCAGTATAGTGAACTGTACAATTCTCAGGCATTTCAGAATTTCAGAAAATTGCCAAATTGGCAGTGCCTGTTCGTTATCTTGTAGTATCAGTTGTTTTTTGTGCTATAGTACT                                 ]
[+] EMBL AK099296             [                                               GCCGGAGAATCCGCCTGCCATGGATTATTACTACCCCATGGAGGAGGAGGAGGAGGTGCACGAGCGCCCAAGATTCCGGCGCCCGGTCCACCCGTGGCAGTGGCACCATTGGCAGAATCTCCTCGGCCTCCTCTCGTCGTCGTCTCCGTCTCCGGCGACGGCGGCGGCGGCGCAGAGGTGCAGCCATGTCAGCTGGGAGGAGACCGCCGCCGCGCACCTCTACTCCGCCAGCCTCCCCGGTGTGAGGAAGGAGGAGATCAGGGTGGAGGTGGAGGACGCGATGTACCTCGTCATCCGCACCGAGCTTGATGACGGTGGCGATGGCGACGGCGGAGGCGGCGGTGGCCGGAGGAGCTTCGCGAGGAAGTTCCGGCTGCCGGCGATGGTGGACGCCGACGGCATCTCGGCGGAGTACACCCACGGCGTGCTCAGGGTAACCGTCCCGAGGCTGCATACGCGGGCTCGCCCCGTCGTCAACCTCGCCGGCGGCGGC GGCGGTGGCGGTGGCCC GGCCTGCGACCCCGTCGCCAGAGCAGCCTGATTAGTGATTCGATATCAATCAAGA AAATTACTTAATT ACTTATTT AAGTTGCACTGTGAGCTTAGGATTGGGGAAGTAATAGCAGTATAGTGAACTGTACAATTCTCAGGCATTTCAGAATTTCAGAAAATTGCCAAATTGGCAGTGCCTGTTCGTTATCTTGTAGTATCAGTTGTTTTTTGTGCTATAGTACTCTATTTCTGTTCTGTCGCAGTAAAACGTGAAGG]
[+] EMBL AU162438             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GGCGGCTGGCGGTGGCGGTGGCCCTGGCCTGCGNCCCCGTCGCCCGAGCAGCCTGATTAGTGATTCGATNTCATTCAAGAGNAATTACTTAATTNACTTATTTGAAGTTGCACTGTGAGCTTAGGATTGGGGAAGTAATAGCAGTATAGTGAACTGTACAATTCTCAGGCATTTCAGAATTTCAGAAAATTGCCAAATTGGCAGTGCCTGTTCGaaaaa                                                                   ]




>consensus_7880#1
TCTCCGGCTATTTATGCAGCCGGAGAGTGACCGGGATGCGGACGCCGGCCGGAGAATCCG
CCTGCCATGGATTATTACTACCCCATGGAGGAGGAGGAGGAGGTGCACGAGCGCCCAAGA
TTCCGGCGCCCGGTCCACCCGTGGCAGTGGCACCATTGGCAGAATCTCCTCGGCCTCCTC
TCGTCGTCGTCTCCGTCTCCGGCGACGGCGGCGGCGGCGCAGAGGTGCAGCCATGTCAGC
TGGGAGGAGACCGCCGCCGCGCACCTCTACTCCGCCAGCCTCCCCGGTGTGAGGAAGGAG
GAGATCAGGGTGGAGGTGGAGGACGCGATGTACCTCGTCATCCGCACCGAGCTTGATGAC
GGTGGCGATGGCGACGGCGGAGGCGGCGGTGGCCGGAGGAGCTTCGCGAGGAAGTTCCGG
CTGCCGGCGATGGTGGACGCCGACGGCATCTCGGCGGAGTACACCACGGCGTGCTCAGGG
TAACCGTCCCGAGGCTGCATACGCGGGCTCGCCCCGTCGTCAACCTCGCCGGCGGCGGCG
GCGGTGGCGGTGGCCCGGCCTGCGACCCCGTCGCCCGAGCAGCCTGATTAGTGATTCGAT
ATCAATCAAGAAAATTACTTAATTACTTATTTAAGTTGCACTGTGAGCTTAGGATTGGGG
AAGTAATAGCAGTATAGTGAACTGTACAATTCTCAGGCATTTCAGAATTTCAGAAAATTG
CCAAATTGGCAGTGCCTGTTCGTTATCTTGTAGTATCAGTTGTTTTTTGTGCTATAGTAC
TCTATTTCTGTTCTGTCGCAGTAAAACGTGAAGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7880#0      --------------------------------------------------GGAGAATCCG 10
consensus_7880#1      TCTCCGGCTATTTATGCAGCCGGAGAGTGACCGGGATGCGGACGCCGGCCGGAGAATCCG 60
                                                                        **********

consensus_7880#0      CCTGCCATGGATTATTACTACCCCATGGAGGAGGAGGAGGAGGTGCACGAGCGCCCAAGA 70
consensus_7880#1      CCTGCCATGGATTATTACTACCCCATGGAGGAGGAGGAGGAGGTGCACGAGCGCCCAAGA 120
                      ************************************************************

consensus_7880#0      TTCCGGCGCCCGGTCCACCCGTGGCAGTGGCACCATTGGCAGAATCTCCTCGGCCTCCTC 130
consensus_7880#1      TTCCGGCGCCCGGTCCACCCGTGGCAGTGGCACCATTGGCAGAATCTCCTCGGCCTCCTC 180
                      ************************************************************

consensus_7880#0      TCGTCGTCGTCTCCGTCTCCGGCGACGGCGGCGGCGGCGCAGAGGTGCAGCCATGTCAGC 190
consensus_7880#1      TCGTCGTCGTCTCCGTCTCCGGCGACGGCGGCGGCGGCGCAGAGGTGCAGCCATGTCAGC 240
                      ************************************************************

consensus_7880#0      TGGGAGGAGACCGCCGCCGCGCACCTCTACTCCGCCAGCCTCCCCGGTAATCAATCAAAA 250
consensus_7880#1      TGGGAGGAGACCGCCGCCGCGCACCTCTACTCCGCCAGCCTCCCCGGT------------ 288
                      ************************************************            

consensus_7880#0      ACATCATCTCATCGAATCTTTTGGTGCTTTGATTTCCTTGATTGATACGAAGAGAGGAAT 310
consensus_7880#1      ------------------------------------------------------------
                                                                                  

consensus_7880#0      GGTGGGGTTAGGTGTGAGGAAGGAGGAGATCAGGGTGGAGGTGGAGGACGCGATGTACCT 370
consensus_7880#1      -------------GTGAGGAAGGAGGAGATCAGGGTGGAGGTGGAGGACGCGATGTACCT 335
                                   ***********************************************

consensus_7880#0      CGTCATCCGCACCGAGCTTGATGACGGTGGCGATGGCGACGGCGGAGGCGGCGGTGGCCG 430
consensus_7880#1      CGTCATCCGCACCGAGCTTGATGACGGTGGCGATGGCGACGGCGGAGGCGGCGGTGGCCG 395
                      ************************************************************

consensus_7880#0      GAGGAGCTTCGCGAGGAAGTTCCGGCTGCCGGCGATGGTGGACGCCGACGGCATCTCGGC 490
consensus_7880#1      GAGGAGCTTCGCGAGGAAGTTCCGGCTGCCGGCGATGGTGGACGCCGACGGCATCTCGGC 455
                      ************************************************************

consensus_7880#0      GGAGTACACCCACGGCGTGCTCAGGGTAACCGTCCCGAGGCTGCATACGCGGGCTCGCCC 550
consensus_7880#1      GGAGTACACC-ACGGCGTGCTCAGGGTAACCGTCCCGAGGCTGCATACGCGGGCTCGCCC 514
                      ********** *************************************************

consensus_7880#0      CGTCGTCAACCTCGCCGGCGGCGGCGGCGGTGGCGGTGGCCCGGCCTGCGACCCCGTCGC 610
consensus_7880#1      CGTCGTCAACCTCGCCGGCGGCGGCGGCGGTGGCGGTGGCCCGGCCTGCGACCCCGTCGC 574
                      ************************************************************

consensus_7880#0      CCGAGCAGCCTGATTAGTGATTCGATATCAATCAAGAAAATTACTTAATTACTTATTTAA 670
consensus_7880#1      CCGAGCAGCCTGATTAGTGATTCGATATCAATCAAGAAAATTACTTAATTACTTATTTAA 634
                      ************************************************************

consensus_7880#0      GTTGCACTGTGAGCTTAGGATTGGGGAAGTAATAGCAGTATAGTGAACTGTACAATTCTC 730
consensus_7880#1      GTTGCACTGTGAGCTTAGGATTGGGGAAGTAATAGCAGTATAGTGAACTGTACAATTCTC 694
                      ************************************************************

consensus_7880#0      AGGCATTTCAGAATTTCAGAAAATTGCCAAATTGGCAGTGCCTGTTCGTTATCTTGTAGT 790
consensus_7880#1      AGGCATTTCAGAATTTCAGAAAATTGCCAAATTGGCAGTGCCTGTTCGTTATCTTGTAGT 754
                      ************************************************************

consensus_7880#0      ATCAGTTGTTTTTTGTGCTATAGTACTCTATTTCTGTTCTGTCGCAGTAAAACGTGAAGG 850
consensus_7880#1      ATCAGTTGTTTTTTGTGCTATAGTACTCTATTTCTGTTCTGTCGCAGTAAAACGTGAAGG 814
                      ************************************************************

consensus_7880#0      ATT 853
consensus_7880#1      ---