These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7903#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1424 fasta sequence [CGTCGTCGGCGGCCGCCGGCGAGCCCCCATGGCCTCCTCCCTCCTCTCCTCCGCCGCCTCCGGCCTCCCTCCCAAGCCGCAGCCACCTTCCTCCACCCCTCCCTCCTCCGCCTCCGCGCGGCCGCGGGGCTTCCGTCGCTTCATGCTCGCCCGCGCCGCCGCGGGCCGCGACCCGGAGCCGCCGCCGCTGCCCGAGGGGACCGAGAAGAGGTCGCTCGCGGTGAGGACGGGGGAGGTGTTCCTGGGGCTGGCGGCGCTGCTGGTGCGCGCGGGGAGGGGCGGGGGGGCGGCGGTGGAGGAGGTGGAGGCGAAGGACGGGGTGGTGTGGGAGCAGCGGCCCGAGGACGTGGAGGCGGAGCGGCGGCGGCGGGAGCTGACCGGCCCCGGGTTCAGCTTCTCCGCCGCCGGGCTGCTCTTCCCCTACCACATCGGCGTCGCGCAGTGCCTCATCGACAGGGGCTACCTCACGGAAAGAACTCCGTTAGCTGGTTCATCAGCTGGTGCCATAATCTGTGCAGTGATTGCATCTGGGAACACGATGCGAGATGCTTTGCAAGTGACCAAGGATCTAGCTGATAACTGTCGGAGCAATGGGACAGCCTTTCGCCTTGGGGCTGTACTCAAGGATGTTCTAGACAGGTTTCTCCCAGATGATGTGCACATTAGGTGCAACGGAAGGATCCGTGTTGCTATTACTCAGCTGTCCTGGAGGCCTAGGGGCTTACTGGTTGACCAATTTGACTCAAAAGATGATGTAATCAGTGCAGTTATTACATCCTCTTTTATTCCTGGATATTTAGCTCCCAGGCCTGCAACTTTCTTCCGGAACAGGCTGTGCATTGATGGGGGCCTTACGTTGTTTATGCCACCAACTTCTGCTTCCGAAACAGTTCGAATTTGTGCTTTCCCAGCCAGTCGACTAGGATTGCAAGGGATTGGTATTAGTCCAGACTGCAATCCGGAGAACAGAGCTAGCCCCCGACAGCTGTTTAACTGGGCTCTGGAACCCGCCGAAGACGAGGTTCTAGACAAATTATATGAGCTTGGGTATCTGGATGCAGCTGTATGGGCTGACCAGAATC-AAGTTGAGTTGATTGTGAAGAATGAACAGCCAC-TCCGCGTCACAGATTGAGAAGACACCAACAAGAAGACCCTGAGTTCTTGAACCTAACAGTATTTGGTTTGCTCAAAAGCTAACATCTGAATCTGTTTGCCCCAGCTGTGCTCAGAAGTCTCTCACGTACAACTGCATCAGCTGTATTTCTTTTCCCAAATTTTGCCAGCTCTAGGTTACCAGTTCAATACTACAATGGTTTGTAAAGTGTGACTGCTGCAACCACACGAGAGCTTTACTATGCTACTCGTTGCCTTGATTTTGCAGTAAATATTGTTTTGTCCTCCATTGCAAGGAAGAGTAGAGCGGC] [+] EMBL AK121962 [CGTCGTCGGCGGCCGCCGGCGAGCCCCCATGGCCTCCTCCCTCCTCTCCTCCGCCGCCTCCGGCCTCCCTCCCAAGCCGCAGCCACCTTCCTCCACCCCTCCCTCCTCCGCCTCCGCGCGGCCGCGGGGCTTCCGTCGCTTCATGCTCGCCCGCGCCGCCGCGGGCCGCGACCCGGAGCCGCCGCCGCTGCCCGAGGGGACCGAGAAGAGGTCGCTCGCGGTGAGGACGGGGGAGGTGTTCCTGGGGCTGGCGGCGCTGCTGGTGCGCGCGGGGAGGGGCGGGGGGGCGGCGGTGGAGGAGGTGGAGGCGAAGGACGGGGTGGTGTGGGAGCAGCGGCCCGAGGACGTGGAGGCGGAGCGGCGGCGGCGGGAGCTGACCGGCCCCGGGTTCAGCTTCTCCGCCGCCGGGCTGCTCTTCCCCTACCACATCGGCGTCGCGCAGTGCCTCATCGACAGGGGCTACCTCACGGAAAGAACTCCGTTAGCTGGTTCATCAGCTGGTGCCATAATCTGTGCAGTGATTGCATCTGGGAACACGATGCGAGATGCTTTGCAAGTGACCAAGGATCTAGCTGATAACTGTCGGAGCAATGGGACAGCCTTTCGCCTTGGGGCTGTACTCAAGGATGTTCTAGACAGGTTTCTCCCAGATGATGTGCACATTAGGTGCAACGGAAGGATCCGTGTTGCTATTACTCAGCTGTCCTGGAGGCCTAGGGGCTTACTGGTTGACCAATTTGACTCAAAAGATGATGTAATCAGTGCAGTTATTACATCCTCTTTTATTCCTGGATATTTAGCTCCCAGGCCTGCAACTTTCTTCCGGAACAGGCTGTGCATTGATGGGGGCCTTACGTTGTTTATGCCACCAACTTCTGCTTCCGAAACAGTTCGAATTTGTGCTTTCCCAGCCAGTCGACTAGGATTGCAAGGGATTGGTATTAGTCCAGACTGCAATCCGGAGAACAGAGCTAGCCCCCGACAGCTGTTTAACTGGGCTCTGGAACCCGCCGAAGACGAGGTTCTAGACAAATTATATGAGCTTGGGTATCTGGATGCAGCTGTATGGGCTGACCAGAATC AAGTTGAGTTGATTGTGAAGAATGAACAGCCAC TCCGCGTCACAGATTGAGAAGACACCAACAAGAAGACCCTGAGTTCTTGAACCTAACAGTATTTGGTTTGCTCAAAAGCTAACATCTGAATCTGTTTGCCCCAGCTGTGCTCAGAAGTCTCTCACGTACAACTGCATCAGCTGTATTTCTTTTCCCAAATTTTGCCAGCTCTAGGTTACCAGTTCAATACTACAATGGTTTGTAAAGTGTGACTGCTGCAACCACACGAGAGCTTTACTATGCTACTCGTTGCCTTGATTTTGCAGTAAATATTGT ] [+] EMBL BE230503 [ CAATGGGACAGCCTTTCGCCTTGGGGCTGTACTCAAGGATGTTCTAGACAGGTTTCTCCCAGATGATGTGCACATTAGGTGCAACGGAAGGATCCGTGTTGCTATTACTCAGCTGTCCTGGAGGCCTAGGGGCTTACTGGTTGACCAATTTGACTCAAAAGATGATGTAATCAGTGCAGTTATTACATCCTCTTTTATTCCTGGATATTTAGCTCCCAGGCCTGCAACTTTCTTCCGGAACAGGCTGTGCATTGATGGGGGCCTTACGTTGTTTATGCCACCAACTTCTGCTTCCGAAACAGTTCGAATTTGTGCTTTCCCAGCCAGTCGACTAGGATTGCAAGGGATTGGTATTAGTCCAGACTGCAATCCGGAGAACAGAGCTAGCCCCCGACAGCTGTTTAACTGGGCTCTGGAACCCGCCGAAGACGAGGTTCTAGACAAATTATATGAGCTTGGGTATCTGGATGCAGCTGTATGGGCTGACCAGAATCAAAGTTGAGTTGATTGTGAAGAATGAACAGCCACTTCCGCGTCACAa ] [-] EMBL AU225543 [ TTAACTGGGCTCTGGAACCCGCCGAAGACGAGGTTCTAGACAAATTATATGAGCTTGGGTATCTGGATGCAGCTGTATGGGCTGACCAGAATC AAGTTGAGTTGATTGTGAAGAATGAACAGCCAC TCCGCGTCACAGATTGAGAAGACACCAACAAGAAGACCCTGAGTTCTTGAACCTAACAGTATTTGGTTTGCTCAAAAGCTAACATCTGAATCTGTTTGCCCCAGCTGTGCTCAGAAGTCTCTCACGTACAACTGCATCAGCTGTATTTCTTTTCCCAAATTTTGCCAGCTCTAGGTTACCAGTTCAATACTACAATGGTTTGTAAAGTGTGACTGCTGCAACCACACGAGAGCTTTACTATGCTACTCGTTGCCTTGATTTTGCAGTAAATATTGTTTTGTCCTCCATTGCAAGGAAGAGTAGAGCGGC] consensusID : consensus_7903#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 693 fasta sequence [GAGGAAAAGACTCCGTTAGCTGGTTCATCAGCTGGTGCCATAATCTGTGCAGTGATTGCATCTGGGAACACGATGCGAAGATGCTTTGCAAGTGACCAAGGATCTANCTGATAACTGTCGGAGCAATGGGACAGCCTTTCGCCTTGGGGCTGTNCTCAAGGATGTTCTAAACAGGTTTCTCCCNAATAATNTGCACATTAGGTGCAACGGAAGGATCCGTNTTGCTATTACNCACCTNTCCNGAANGCCNAGGGGCTTACTGGTTGACCNNTTTGACTCNAAAAATNATTTNNTCNNTGCAGTTATTACATCCCCTTTTATNCCNGNATATTTAGCTCCCAGGCCTGCAACTTTCTTCCGGAACAGGCTGTGCNTTNATGGGGGCCTTACCTTNTTTATGCCCCCACTTCTGCNTCCNAAACAATTCNAATTTGTGCTTTCCCCCCTCTCCACTAAGATTGCGGGGATTGGTTTTNTCCACACTGCNNNCCCGAAAAAAACTCCCCCACACTNTTTCTGGCCTGGAACCNCCAAAANAGTCTAACAATATATAACTGGGTTCTGATCCCTTTTGGCGACACACTTTTATTATGTAAAANACNCCCNCCCTCCCATGANAAACCCNCAAAAACCTNTCTNAACCNCATTTTGGTTGCTCAAAACNACATCTAATCTGTTGCCCCNCTNTCCAAA] [+] EMBL BE229699 [GAGGAAAAGACTCCGTTAGCTGGTTCATCAGCTGGTGCCATAATCTGTGCAGTGATTGCATCTGGGAACACGATGCGAAGATGCTTTGCAAGTGACCAAGGATCTANCTGATAACTGTCGGAGCAATGGGACAGCCTTTCGCCTTGGGGCTGTNCTCAAGGATGTTCTAAACAGGTTTCTCCCNAATAATNTGCACATTAGGTGCAACGGAAGGATCCGTNTTGCTATTACNCACCTNTCCNGAANGCCNAGGGGCTTACTGGTTGACCNNTTTGACTCNAAAAATNATTTNNTCNNTGCAGTTATTACATCCCCTTTTATNCCNGNATATTTAGCTCCCAGGCCTGCAACTTTCTTCCGGAACAGGCTGTGCNTTNATGGGGGCCTTACCTTNTTTATGCCCCCACTTCTGCNTCCNAAACAATTCNAATTTGTGCTTTCCCCCCTCTCCACTAAGATTGCGGGGATTGGTTTTNTCCACACTGCNNNCCCGAAAAAAACTCCCCCACACTNTTTCTGGCCTGGAACCNCCAAAANAGTCTAACAATATATAACTGGGTTCTGATCCCTTTTGGCGACACACTTTTATTATGTAAAANACNCCCNCCCTCCCATGANAAACCCNCAAAAACCTNTCTNAACCNCATTTTGGTTGCTCAAAACNACATCTAATCTGTTGCCCCNCTNTCCAAA] consensusID : consensus_7903#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 282 fasta sequence [CATGGACTGAAAGAGTAGAAATTGAACCTAACAGTATTTGGTTTGCTCAAAAGCTAACATCTGAATCTGTTTGCCCCAGCTGTGCTCAGAAGTCTCTCACGTACAACTGCATCAGCTGTATTTCTTTTCCCAAATTTTGCCAGCTCTAGGTTACCAGTTCAATACTACAATGGTTTGTNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF310297 [CATGGACTGAAAGAGTAGAAATTGAACCTAACAGTATTTGGTTTGCTCAAAAGCTAACATCTGAATCTGTTTGCCCCAGCTGTGCTCAGAAGTCTCTCACGTACAACTGCATCAGCTGTATTTCTTTTCCCAAATTTTGCCAGCTCTAGGTTACCAGTTCAATACTACAATGGTTTGTNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7903#0 CGTCGTCGGCGGCCGCCGGCGAGCCCCCATGGCCTCCTCCCTCCTCTCCTCCGCCGCCTC 60 consensus_7903#1 ------------------------------------------------------------ consensus_7903#2 ------------------------------------------------------------ consensus_7903#0 CGGCCTCCCTCCCAAGCCGCAGCCACCTTCCTCCACCCCTCCCTCCTCCGCCTCCGCGCG 120 consensus_7903#1 ------------------------------------------------------------ consensus_7903#2 ------------------------------------------------------------ consensus_7903#0 GCCGCGGGGCTTCCGTCGCTTCATGCTCGCCCGCGCCGCCGCGGGCCGCGACCCGGAGCC 180 consensus_7903#1 ------------------------------------------------------------ consensus_7903#2 ------------------------------------------------------------ consensus_7903#0 GCCGCCGCTGCCCGAGGGGACCGAGAAGAGGTCGCTCGCGGTGAGGACGGGGGAGGTGTT 240 consensus_7903#1 ------------------------------------------------------------ consensus_7903#2 ------------------------------------------------------------ consensus_7903#0 CCTGGGGCTGGCGGCGCTGCTGGTGCGCGCGGGGAGGGGCGGGGGGGCGGCGGTGGAGGA 300 consensus_7903#1 ------------------------------------------------------------ consensus_7903#2 ------------------------------------------------------------ consensus_7903#0 GGTGGAGGCGAAGGACGGGGTGGTGTGGGAGCAGCGGCCCGAGGACGTGGAGGCGGAGCG 360 consensus_7903#1 ------------------------------------------------------------ consensus_7903#2 ------------------------------------------------------------ consensus_7903#0 GCGGCGGCGGGAGCTGACCGGCCCCGGGTTCAGCTTCTCCGCCGCCGGGCTGCTCTTCCC 420 consensus_7903#1 ------------------------------------------------------------ consensus_7903#2 ------------------------------------------------------------ consensus_7903#0 CTACCACATCGGCGTCGCGCAGTGCCTCATCGACAGGGGCTACCTCACGGAAAGAACTCC 480 consensus_7903#1 ----------------------------------------------GAGGAAAAGACTCC 14 consensus_7903#2 ------------------------------------------------------------ consensus_7903#0 GTTAGCTGGTTCATCAGCTGGTGCCATAATCTGTGCAGTGATTGCATCTGGGAACACGAT 540 consensus_7903#1 GTTAGCTGGTTCATCAGCTGGTGCCATAATCTGTGCAGTGATTGCATCTGGGAACACGAT 74 consensus_7903#2 ------------------------------------------------------------ consensus_7903#0 GCGA-GATGCTTTGCAAGTGACCAAGGATCTAGCTGATAACTGTCGGAGCAATGGGACAG 599 consensus_7903#1 GCGAAGATGCTTTGCAAGTGACCAAGGATCTANCTGATAACTGTCGGAGCAATGGGACAG 134 consensus_7903#2 ----------------------CATGGACTGAAAGAGTAGAAATTGAACCTAACAGTATT 38 ** *** * ** * * * * * * consensus_7903#0 CCTTTCGCCTTGGGGCTGTACTCAAGGATGTTCTAGACAGGTTTCTCCCAGATGATGTGC 659 consensus_7903#1 CCTTTCGCCTTGGGGCTGTNCTCAAGGATGTTCTAAACAGGTTTCTCCCNAATAATNTGC 194 consensus_7903#2 TGGTTTGCTCAAAAGCTAACATCTGAATCTGTTTGCCCCAGCTGTGCTCAGAAGTCTCTC 98 ** ** *** ** * * * * * * * * * consensus_7903#0 ACAT-TAGGTGCAACGGAAGGATCCGTGTTGCTATTACTCAGCTGTCCTGGAGGCCTAGG 718 consensus_7903#1 ACAT-TAGGTGCAACGGAAGGATCCGTNTTGCTATTACNCACCTNTCCNGAANGCCNAGG 253 consensus_7903#2 ACGTACAACTGCATCAGCTGTATTTCTTTTCCCAAATTTTGCCAGCTCTAGGTTACCA-- 156 ** * * **** * * * ** * ** * * * * * * consensus_7903#0 GGCTTACTGGTTGACCAATTTGACTCAAAAGATGATGTAATCAGTGCAGTTATTACATCC 778 consensus_7903#1 GGCTTACTGGTTGACCNNTTTGACTCNAAAAATNATTTNNTCNNTGCAGTTATTACATCC 313 consensus_7903#2 -GTTCAATACTACAATGGTTTGTNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 215 * * * * * * **** *** * * * * * * consensus_7903#0 TCTTTTATTCCTGGATATTTAGCTCCCAGGCCTGCAACTTTCTTCCGGAACAGGCTGTGC 838 consensus_7903#1 CCTTTTATNCCNGNATATTTAGCTCCCAGGCCTGCAACTTTCTTCCGGAACAGGCTGTGC 373 consensus_7903#2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 275 * * * * * ** ** * consensus_7903#0 ATTGATGGGGGCCTTACGTTGTTTATGCCACCAACTTCTGCTTCCGAAACAGTTCGAATT 898 consensus_7903#1 NTTNATGGGGGCCTTACCTTNTTTATGCC-CCCACTTCTGCNTCCNAAACAATTCNAATT 432 consensus_7903#2 AAAAAAA----------------------------------------------------- 282 * consensus_7903#0 TGTGCTTTCCCAGCCAGTCGACTAGGATTGCAAGGGATTGGTATTAGTCCAGACTGCAAT 958 consensus_7903#1 TGTGCTTTCCCC-CCTCTCCACTAAGATTGCG-GGGATTGGT-TTTNTCCACACTGCNNN 489 consensus_7903#2 ------------------------------------------------------------ consensus_7903#0 CCGGAGAACAGAGCTAGCCCCCGACAGCTGTTTAACTGGGCTCTGGAACCCGCCGAAGAC 1018 consensus_7903#1 CCCGAAAAAA-----ACTCCCCCACA-CTNTTT--CTGG--CCTGGAACCNCCAAAANAG 539 consensus_7903#2 ------------------------------------------------------------ consensus_7903#0 GAGGTTCTAGACAAATTATATGAGCTTGGGTATCTGGATGCAGCTGTATGGGCTGACCAG 1078 consensus_7903#1 -----TCTA-ACAA--TATATAA--CTGGGT-TCTG-----ATCCCTTTTGGC------- 576 consensus_7903#2 ------------------------------------------------------------ consensus_7903#0 AATCAAGTTGAGTTGATTGTGAAGAATGAACAGCCACTCCGCGTCACAGATTGAGAAGAC 1138 consensus_7903#1 -GACACACT---TTTATTATGTAAAANA------CNCCCNCCCTCCCA---TGANAA--- 620 consensus_7903#2 ------------------------------------------------------------ consensus_7903#0 ACCAACAAGAAGACCCTGAGTTCTTGAACCTAACAGTATTTGGTTTGCTCAAAAGCTAAC 1198 consensus_7903#1 ACCCNCAAAAA---CCTNT---------CTNAACCNCATTTTGGTTGCTCAAAA--CNAC 666 consensus_7903#2 ------------------------------------------------------------ consensus_7903#0 ATCTGAATCTGTTTGCCCCAGCTGTGCTCAGAAGTCTCTCACGTACAACTGCATCAGCTG 1258 consensus_7903#1 ATCT-AATCTGTT-GCCCCN-CTNTCCAAA------------------------------ 693 consensus_7903#2 ------------------------------------------------------------ consensus_7903#0 TATTTCTTTTCCCAAATTTTGCCAGCTCTAGGTTACCAGTTCAATACTACAATGGTTTGT 1318 consensus_7903#1 ------------------------------------------------------------ consensus_7903#2 ------------------------------------------------------------ consensus_7903#0 AAAGTGTGACTGCTGCAACCACACGAGAGCTTTACTATGCTACTCGTTGCCTTGATTTTG 1378 consensus_7903#1 ------------------------------------------------------------ consensus_7903#2 ------------------------------------------------------------ consensus_7903#0 CAGTAAATATTGTTTTGTCCTCCATTGCAAGGAAGAGTAGAGCGGC 1424 consensus_7903#1 ---------------------------------------------- consensus_7903#2 ---------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||