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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7903#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1424 fasta sequence
[CGTCGTCGGCGGCCGCCGGCGAGCCCCCATGGCCTCCTCCCTCCTCTCCTCCGCCGCCTCCGGCCTCCCTCCCAAGCCGCAGCCACCTTCCTCCACCCCTCCCTCCTCCGCCTCCGCGCGGCCGCGGGGCTTCCGTCGCTTCATGCTCGCCCGCGCCGCCGCGGGCCGCGACCCGGAGCCGCCGCCGCTGCCCGAGGGGACCGAGAAGAGGTCGCTCGCGGTGAGGACGGGGGAGGTGTTCCTGGGGCTGGCGGCGCTGCTGGTGCGCGCGGGGAGGGGCGGGGGGGCGGCGGTGGAGGAGGTGGAGGCGAAGGACGGGGTGGTGTGGGAGCAGCGGCCCGAGGACGTGGAGGCGGAGCGGCGGCGGCGGGAGCTGACCGGCCCCGGGTTCAGCTTCTCCGCCGCCGGGCTGCTCTTCCCCTACCACATCGGCGTCGCGCAGTGCCTCATCGACAGGGGCTACCTCACGGAAAGAACTCCGTTAGCTGGTTCATCAGCTGGTGCCATAATCTGTGCAGTGATTGCATCTGGGAACACGATGCGAGATGCTTTGCAAGTGACCAAGGATCTAGCTGATAACTGTCGGAGCAATGGGACAGCCTTTCGCCTTGGGGCTGTACTCAAGGATGTTCTAGACAGGTTTCTCCCAGATGATGTGCACATTAGGTGCAACGGAAGGATCCGTGTTGCTATTACTCAGCTGTCCTGGAGGCCTAGGGGCTTACTGGTTGACCAATTTGACTCAAAAGATGATGTAATCAGTGCAGTTATTACATCCTCTTTTATTCCTGGATATTTAGCTCCCAGGCCTGCAACTTTCTTCCGGAACAGGCTGTGCATTGATGGGGGCCTTACGTTGTTTATGCCACCAACTTCTGCTTCCGAAACAGTTCGAATTTGTGCTTTCCCAGCCAGTCGACTAGGATTGCAAGGGATTGGTATTAGTCCAGACTGCAATCCGGAGAACAGAGCTAGCCCCCGACAGCTGTTTAACTGGGCTCTGGAACCCGCCGAAGACGAGGTTCTAGACAAATTATATGAGCTTGGGTATCTGGATGCAGCTGTATGGGCTGACCAGAATC-AAGTTGAGTTGATTGTGAAGAATGAACAGCCAC-TCCGCGTCACAGATTGAGAAGACACCAACAAGAAGACCCTGAGTTCTTGAACCTAACAGTATTTGGTTTGCTCAAAAGCTAACATCTGAATCTGTTTGCCCCAGCTGTGCTCAGAAGTCTCTCACGTACAACTGCATCAGCTGTATTTCTTTTCCCAAATTTTGCCAGCTCTAGGTTACCAGTTCAATACTACAATGGTTTGTAAAGTGTGACTGCTGCAACCACACGAGAGCTTTACTATGCTACTCGTTGCCTTGATTTTGCAGTAAATATTGTTTTGTCCTCCATTGCAAGGAAGAGTAGAGCGGC]
[+] EMBL AK121962 [CGTCGTCGGCGGCCGCCGGCGAGCCCCCATGGCCTCCTCCCTCCTCTCCTCCGCCGCCTCCGGCCTCCCTCCCAAGCCGCAGCCACCTTCCTCCACCCCTCCCTCCTCCGCCTCCGCGCGGCCGCGGGGCTTCCGTCGCTTCATGCTCGCCCGCGCCGCCGCGGGCCGCGACCCGGAGCCGCCGCCGCTGCCCGAGGGGACCGAGAAGAGGTCGCTCGCGGTGAGGACGGGGGAGGTGTTCCTGGGGCTGGCGGCGCTGCTGGTGCGCGCGGGGAGGGGCGGGGGGGCGGCGGTGGAGGAGGTGGAGGCGAAGGACGGGGTGGTGTGGGAGCAGCGGCCCGAGGACGTGGAGGCGGAGCGGCGGCGGCGGGAGCTGACCGGCCCCGGGTTCAGCTTCTCCGCCGCCGGGCTGCTCTTCCCCTACCACATCGGCGTCGCGCAGTGCCTCATCGACAGGGGCTACCTCACGGAAAGAACTCCGTTAGCTGGTTCATCAGCTGGTGCCATAATCTGTGCAGTGATTGCATCTGGGAACACGATGCGAGATGCTTTGCAAGTGACCAAGGATCTAGCTGATAACTGTCGGAGCAATGGGACAGCCTTTCGCCTTGGGGCTGTACTCAAGGATGTTCTAGACAGGTTTCTCCCAGATGATGTGCACATTAGGTGCAACGGAAGGATCCGTGTTGCTATTACTCAGCTGTCCTGGAGGCCTAGGGGCTTACTGGTTGACCAATTTGACTCAAAAGATGATGTAATCAGTGCAGTTATTACATCCTCTTTTATTCCTGGATATTTAGCTCCCAGGCCTGCAACTTTCTTCCGGAACAGGCTGTGCATTGATGGGGGCCTTACGTTGTTTATGCCACCAACTTCTGCTTCCGAAACAGTTCGAATTTGTGCTTTCCCAGCCAGTCGACTAGGATTGCAAGGGATTGGTATTAGTCCAGACTGCAATCCGGAGAACAGAGCTAGCCCCCGACAGCTGTTTAACTGGGCTCTGGAACCCGCCGAAGACGAGGTTCTAGACAAATTATATGAGCTTGGGTATCTGGATGCAGCTGTATGGGCTGACCAGAATC AAGTTGAGTTGATTGTGAAGAATGAACAGCCAC TCCGCGTCACAGATTGAGAAGACACCAACAAGAAGACCCTGAGTTCTTGAACCTAACAGTATTTGGTTTGCTCAAAAGCTAACATCTGAATCTGTTTGCCCCAGCTGTGCTCAGAAGTCTCTCACGTACAACTGCATCAGCTGTATTTCTTTTCCCAAATTTTGCCAGCTCTAGGTTACCAGTTCAATACTACAATGGTTTGTAAAGTGTGACTGCTGCAACCACACGAGAGCTTTACTATGCTACTCGTTGCCTTGATTTTGCAGTAAATATTGT ]
[+] EMBL BE230503 [ CAATGGGACAGCCTTTCGCCTTGGGGCTGTACTCAAGGATGTTCTAGACAGGTTTCTCCCAGATGATGTGCACATTAGGTGCAACGGAAGGATCCGTGTTGCTATTACTCAGCTGTCCTGGAGGCCTAGGGGCTTACTGGTTGACCAATTTGACTCAAAAGATGATGTAATCAGTGCAGTTATTACATCCTCTTTTATTCCTGGATATTTAGCTCCCAGGCCTGCAACTTTCTTCCGGAACAGGCTGTGCATTGATGGGGGCCTTACGTTGTTTATGCCACCAACTTCTGCTTCCGAAACAGTTCGAATTTGTGCTTTCCCAGCCAGTCGACTAGGATTGCAAGGGATTGGTATTAGTCCAGACTGCAATCCGGAGAACAGAGCTAGCCCCCGACAGCTGTTTAACTGGGCTCTGGAACCCGCCGAAGACGAGGTTCTAGACAAATTATATGAGCTTGGGTATCTGGATGCAGCTGTATGGGCTGACCAGAATCAAAGTTGAGTTGATTGTGAAGAATGAACAGCCACTTCCGCGTCACAa ]
[-] EMBL AU225543 [ TTAACTGGGCTCTGGAACCCGCCGAAGACGAGGTTCTAGACAAATTATATGAGCTTGGGTATCTGGATGCAGCTGTATGGGCTGACCAGAATC AAGTTGAGTTGATTGTGAAGAATGAACAGCCAC TCCGCGTCACAGATTGAGAAGACACCAACAAGAAGACCCTGAGTTCTTGAACCTAACAGTATTTGGTTTGCTCAAAAGCTAACATCTGAATCTGTTTGCCCCAGCTGTGCTCAGAAGTCTCTCACGTACAACTGCATCAGCTGTATTTCTTTTCCCAAATTTTGCCAGCTCTAGGTTACCAGTTCAATACTACAATGGTTTGTAAAGTGTGACTGCTGCAACCACACGAGAGCTTTACTATGCTACTCGTTGCCTTGATTTTGCAGTAAATATTGTTTTGTCCTCCATTGCAAGGAAGAGTAGAGCGGC]
consensusID : consensus_7903#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 693 fasta sequence
[GAGGAAAAGACTCCGTTAGCTGGTTCATCAGCTGGTGCCATAATCTGTGCAGTGATTGCATCTGGGAACACGATGCGAAGATGCTTTGCAAGTGACCAAGGATCTANCTGATAACTGTCGGAGCAATGGGACAGCCTTTCGCCTTGGGGCTGTNCTCAAGGATGTTCTAAACAGGTTTCTCCCNAATAATNTGCACATTAGGTGCAACGGAAGGATCCGTNTTGCTATTACNCACCTNTCCNGAANGCCNAGGGGCTTACTGGTTGACCNNTTTGACTCNAAAAATNATTTNNTCNNTGCAGTTATTACATCCCCTTTTATNCCNGNATATTTAGCTCCCAGGCCTGCAACTTTCTTCCGGAACAGGCTGTGCNTTNATGGGGGCCTTACCTTNTTTATGCCCCCACTTCTGCNTCCNAAACAATTCNAATTTGTGCTTTCCCCCCTCTCCACTAAGATTGCGGGGATTGGTTTTNTCCACACTGCNNNCCCGAAAAAAACTCCCCCACACTNTTTCTGGCCTGGAACCNCCAAAANAGTCTAACAATATATAACTGGGTTCTGATCCCTTTTGGCGACACACTTTTATTATGTAAAANACNCCCNCCCTCCCATGANAAACCCNCAAAAACCTNTCTNAACCNCATTTTGGTTGCTCAAAACNACATCTAATCTGTTGCCCCNCTNTCCAAA]
[+] EMBL BE229699 [GAGGAAAAGACTCCGTTAGCTGGTTCATCAGCTGGTGCCATAATCTGTGCAGTGATTGCATCTGGGAACACGATGCGAAGATGCTTTGCAAGTGACCAAGGATCTANCTGATAACTGTCGGAGCAATGGGACAGCCTTTCGCCTTGGGGCTGTNCTCAAGGATGTTCTAAACAGGTTTCTCCCNAATAATNTGCACATTAGGTGCAACGGAAGGATCCGTNTTGCTATTACNCACCTNTCCNGAANGCCNAGGGGCTTACTGGTTGACCNNTTTGACTCNAAAAATNATTTNNTCNNTGCAGTTATTACATCCCCTTTTATNCCNGNATATTTAGCTCCCAGGCCTGCAACTTTCTTCCGGAACAGGCTGTGCNTTNATGGGGGCCTTACCTTNTTTATGCCCCCACTTCTGCNTCCNAAACAATTCNAATTTGTGCTTTCCCCCCTCTCCACTAAGATTGCGGGGATTGGTTTTNTCCACACTGCNNNCCCGAAAAAAACTCCCCCACACTNTTTCTGGCCTGGAACCNCCAAAANAGTCTAACAATATATAACTGGGTTCTGATCCCTTTTGGCGACACACTTTTATTATGTAAAANACNCCCNCCCTCCCATGANAAACCCNCAAAAACCTNTCTNAACCNCATTTTGGTTGCTCAAAACNACATCTAATCTGTTGCCCCNCTNTCCAAA]
consensusID : consensus_7903#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 282 fasta sequence
[CATGGACTGAAAGAGTAGAAATTGAACCTAACAGTATTTGGTTTGCTCAAAAGCTAACATCTGAATCTGTTTGCCCCAGCTGTGCTCAGAAGTCTCTCACGTACAACTGCATCAGCTGTATTTCTTTTCCCAAATTTTGCCAGCTCTAGGTTACCAGTTCAATACTACAATGGTTTGTNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF310297 [CATGGACTGAAAGAGTAGAAATTGAACCTAACAGTATTTGGTTTGCTCAAAAGCTAACATCTGAATCTGTTTGCCCCAGCTGTGCTCAGAAGTCTCTCACGTACAACTGCATCAGCTGTATTTCTTTTCCCAAATTTTGCCAGCTCTAGGTTACCAGTTCAATACTACAATGGTTTGTNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7903#0 CGTCGTCGGCGGCCGCCGGCGAGCCCCCATGGCCTCCTCCCTCCTCTCCTCCGCCGCCTC 60
consensus_7903#1 ------------------------------------------------------------
consensus_7903#2 ------------------------------------------------------------
consensus_7903#0 CGGCCTCCCTCCCAAGCCGCAGCCACCTTCCTCCACCCCTCCCTCCTCCGCCTCCGCGCG 120
consensus_7903#1 ------------------------------------------------------------
consensus_7903#2 ------------------------------------------------------------
consensus_7903#0 GCCGCGGGGCTTCCGTCGCTTCATGCTCGCCCGCGCCGCCGCGGGCCGCGACCCGGAGCC 180
consensus_7903#1 ------------------------------------------------------------
consensus_7903#2 ------------------------------------------------------------
consensus_7903#0 GCCGCCGCTGCCCGAGGGGACCGAGAAGAGGTCGCTCGCGGTGAGGACGGGGGAGGTGTT 240
consensus_7903#1 ------------------------------------------------------------
consensus_7903#2 ------------------------------------------------------------
consensus_7903#0 CCTGGGGCTGGCGGCGCTGCTGGTGCGCGCGGGGAGGGGCGGGGGGGCGGCGGTGGAGGA 300
consensus_7903#1 ------------------------------------------------------------
consensus_7903#2 ------------------------------------------------------------
consensus_7903#0 GGTGGAGGCGAAGGACGGGGTGGTGTGGGAGCAGCGGCCCGAGGACGTGGAGGCGGAGCG 360
consensus_7903#1 ------------------------------------------------------------
consensus_7903#2 ------------------------------------------------------------
consensus_7903#0 GCGGCGGCGGGAGCTGACCGGCCCCGGGTTCAGCTTCTCCGCCGCCGGGCTGCTCTTCCC 420
consensus_7903#1 ------------------------------------------------------------
consensus_7903#2 ------------------------------------------------------------
consensus_7903#0 CTACCACATCGGCGTCGCGCAGTGCCTCATCGACAGGGGCTACCTCACGGAAAGAACTCC 480
consensus_7903#1 ----------------------------------------------GAGGAAAAGACTCC 14
consensus_7903#2 ------------------------------------------------------------
consensus_7903#0 GTTAGCTGGTTCATCAGCTGGTGCCATAATCTGTGCAGTGATTGCATCTGGGAACACGAT 540
consensus_7903#1 GTTAGCTGGTTCATCAGCTGGTGCCATAATCTGTGCAGTGATTGCATCTGGGAACACGAT 74
consensus_7903#2 ------------------------------------------------------------
consensus_7903#0 GCGA-GATGCTTTGCAAGTGACCAAGGATCTAGCTGATAACTGTCGGAGCAATGGGACAG 599
consensus_7903#1 GCGAAGATGCTTTGCAAGTGACCAAGGATCTANCTGATAACTGTCGGAGCAATGGGACAG 134
consensus_7903#2 ----------------------CATGGACTGAAAGAGTAGAAATTGAACCTAACAGTATT 38
** *** * ** * * * * * *
consensus_7903#0 CCTTTCGCCTTGGGGCTGTACTCAAGGATGTTCTAGACAGGTTTCTCCCAGATGATGTGC 659
consensus_7903#1 CCTTTCGCCTTGGGGCTGTNCTCAAGGATGTTCTAAACAGGTTTCTCCCNAATAATNTGC 194
consensus_7903#2 TGGTTTGCTCAAAAGCTAACATCTGAATCTGTTTGCCCCAGCTGTGCTCAGAAGTCTCTC 98
** ** *** ** * * * * * * * * *
consensus_7903#0 ACAT-TAGGTGCAACGGAAGGATCCGTGTTGCTATTACTCAGCTGTCCTGGAGGCCTAGG 718
consensus_7903#1 ACAT-TAGGTGCAACGGAAGGATCCGTNTTGCTATTACNCACCTNTCCNGAANGCCNAGG 253
consensus_7903#2 ACGTACAACTGCATCAGCTGTATTTCTTTTCCCAAATTTTGCCAGCTCTAGGTTACCA-- 156
** * * **** * * * ** * ** * * * * * *
consensus_7903#0 GGCTTACTGGTTGACCAATTTGACTCAAAAGATGATGTAATCAGTGCAGTTATTACATCC 778
consensus_7903#1 GGCTTACTGGTTGACCNNTTTGACTCNAAAAATNATTTNNTCNNTGCAGTTATTACATCC 313
consensus_7903#2 -GTTCAATACTACAATGGTTTGTNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 215
* * * * * * **** *** * * * * * *
consensus_7903#0 TCTTTTATTCCTGGATATTTAGCTCCCAGGCCTGCAACTTTCTTCCGGAACAGGCTGTGC 838
consensus_7903#1 CCTTTTATNCCNGNATATTTAGCTCCCAGGCCTGCAACTTTCTTCCGGAACAGGCTGTGC 373
consensus_7903#2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 275
* * * * * ** ** *
consensus_7903#0 ATTGATGGGGGCCTTACGTTGTTTATGCCACCAACTTCTGCTTCCGAAACAGTTCGAATT 898
consensus_7903#1 NTTNATGGGGGCCTTACCTTNTTTATGCC-CCCACTTCTGCNTCCNAAACAATTCNAATT 432
consensus_7903#2 AAAAAAA----------------------------------------------------- 282
*
consensus_7903#0 TGTGCTTTCCCAGCCAGTCGACTAGGATTGCAAGGGATTGGTATTAGTCCAGACTGCAAT 958
consensus_7903#1 TGTGCTTTCCCC-CCTCTCCACTAAGATTGCG-GGGATTGGT-TTTNTCCACACTGCNNN 489
consensus_7903#2 ------------------------------------------------------------
consensus_7903#0 CCGGAGAACAGAGCTAGCCCCCGACAGCTGTTTAACTGGGCTCTGGAACCCGCCGAAGAC 1018
consensus_7903#1 CCCGAAAAAA-----ACTCCCCCACA-CTNTTT--CTGG--CCTGGAACCNCCAAAANAG 539
consensus_7903#2 ------------------------------------------------------------
consensus_7903#0 GAGGTTCTAGACAAATTATATGAGCTTGGGTATCTGGATGCAGCTGTATGGGCTGACCAG 1078
consensus_7903#1 -----TCTA-ACAA--TATATAA--CTGGGT-TCTG-----ATCCCTTTTGGC------- 576
consensus_7903#2 ------------------------------------------------------------
consensus_7903#0 AATCAAGTTGAGTTGATTGTGAAGAATGAACAGCCACTCCGCGTCACAGATTGAGAAGAC 1138
consensus_7903#1 -GACACACT---TTTATTATGTAAAANA------CNCCCNCCCTCCCA---TGANAA--- 620
consensus_7903#2 ------------------------------------------------------------
consensus_7903#0 ACCAACAAGAAGACCCTGAGTTCTTGAACCTAACAGTATTTGGTTTGCTCAAAAGCTAAC 1198
consensus_7903#1 ACCCNCAAAAA---CCTNT---------CTNAACCNCATTTTGGTTGCTCAAAA--CNAC 666
consensus_7903#2 ------------------------------------------------------------
consensus_7903#0 ATCTGAATCTGTTTGCCCCAGCTGTGCTCAGAAGTCTCTCACGTACAACTGCATCAGCTG 1258
consensus_7903#1 ATCT-AATCTGTT-GCCCCN-CTNTCCAAA------------------------------ 693
consensus_7903#2 ------------------------------------------------------------
consensus_7903#0 TATTTCTTTTCCCAAATTTTGCCAGCTCTAGGTTACCAGTTCAATACTACAATGGTTTGT 1318
consensus_7903#1 ------------------------------------------------------------
consensus_7903#2 ------------------------------------------------------------
consensus_7903#0 AAAGTGTGACTGCTGCAACCACACGAGAGCTTTACTATGCTACTCGTTGCCTTGATTTTG 1378
consensus_7903#1 ------------------------------------------------------------
consensus_7903#2 ------------------------------------------------------------
consensus_7903#0 CAGTAAATATTGTTTTGTCCTCCATTGCAAGGAAGAGTAGAGCGGC 1424
consensus_7903#1 ----------------------------------------------
consensus_7903#2 ----------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||