These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7910#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1438 fasta sequence [CCATTTCGGACTTCTACCCACTCTCCTCTCTCCCCTTCCCTCCCTCCTCCCTGCTGGGCTTCGGGCGGCGGCGGCGGCGGCGGTGGGGGTGGATGGCCTCCGCGGCATCGGCGCCGGCGTTCGAGAGGCTGGCCGGGATCCGGGCACTGGCGGAGTCCGGCCGCTTCAAGGCGTGGTTCCTCGATCAGTTTGGTGTTCTTCACGATGGGAAGAAGCCTTACCCTGGTGCCGTTCTCGCGTTGGAGAAGCTCGCTGAGAAAGGGGCGAAGATGGTAATCATTAGCAATTCGTCGAGGAGGTCGTCTGTAACCATGGAGAAGCTAGAGAGCCTTGGTTTTGACCCATCCTGTTTCCTCAGGGCCATTACTAGCGGGGAACTCACACATCAGTACCTTCAGAAGAGAGATGATCCTTGGTTTGCAGCTCTTGGAAGAAAGTGCGTCCATCTGACATGGGGCAATCGAGGCGCAATTTCTCTGGAGGGCCTTGGTTTGCAAGTCGTGAGCAATGTCGAAGAGGCAGAGTTTATATTAGCCCATGGTACTGAGGCCCTGGGTCTACCTTCAGGGGATCCACTTCCCAAAAGTCTTGAGGAGCTTGAGCAGGTTCTAATGCTATGCCTAGAAAAGCGACTGCCAATGGTAGTAGCTAACCCTGATTATGTTACTGTTGAAGCACGAGATCTGCGAGTCATGCCTGGCACTCTGGCAGCCAAATACGAGAGTCTTGGTGGTGAGGTGAAATGGATGGGGAAGCCTGATAAGGTGATCTATACATCAGCAATGTCCCTGGCAGGGGTTAATCCTCATGAATGTATCACAGTAGGTGATTCACTGCACCACGACATCAAAGGTGCAAACGCATCTAGAGTCGCTTCTGCATTCATTACTGGAGGGATTCATGCAACTGAACTTGGACTCAATGAGATTGGAGAAATCGCTGGAGAGGACGCCATCGATTCATTGTGCCGCAAGCATGGCTCCTATCCCACCTATGTTTTGCCTTCATTTACATGGTAGAAACACGGTATACCTTTGGGTAAATGCATCATCTGTGTCTCAGAACATGGTGCAGAAACCGTCAATTCCAGCAAGGTCATGCAGTATAATCAGTAATTGTGCTCTTGAGGTACCTGCTACTGTGCTCAACGTTTCCCATTTTCCTGAGTTGTTGGCAAAGGTCAAAACTGAGACCAGCAGAGTTCAGGATGAGAATAGTCTTATTTCCTTGCTGGATATACAAGATGGTGTCAAACTTACATGTGTTTTTTATGATTTGTTTTGCAATGGTTCCTTCTCTGAACCATTTGGATTTCATAGACAGATTACTGAGAATTACTCATGTTAGAGTTAAACACGTTATGCTAATAAGATCACTTATCAGTGACACACCCCTTGTACATCAAATTTCATTGATGAATATTAAACGAGCAAACCAT] [+] EMBL AK058496 [CCATTTCGGACTTCTACCCACTCTCCTCTCTCCCCTTCCCTCCCTCCTCCCTGCTGGGCTTCGGGCGGCGGCGGCGGCGGCGGTGGGGGTGGATGGCCTCCGCGGCATCGGCGCCGGCGTTCGAGAGGCTGGCCGGGATCCGGGCACTGGCGGAGTCCGGCCGCTTCAAGGCGTGGTTCCTCGATCAGTTTGGTGTTCTTCACGATGGGAAGAAGCCTTACCCTGGTGCCGTTCTCGCGTTGGAGAAGCTCGCTGAGAAAGGGGCGAAGATGGTAATCATTAGCAATTCGTCGAGGAGGTCGTCTGTAACCATGGAGAAGCTAGAGAGCCTTGGTTTTGACCCATCCTGTTTCCTCAGGGCCATTACTAGCGGGGAACTCACACATCAGTACCTTCAGAAGAGAGATGATCCTTGGTTTGCAGCTCTTGGAAGAAAGTGCGTCCATCTGACATGGGGCAATCGAGGCGCAATTTCTCTGGAGGGCCTTGGTTTGCAAGTCGTGAGCAATGTCGAAGAGGCAGAGTTTATATTAGCCCATGGTACTGAGGCCCTGGGTCTACCTTCAGGGGATCCACTTCCCAAAAGTCTTGAGGAGCTTGAGCAGGTTCTAATGCTATGCCTAGAAAAGCGACTGCCAATGGTAGTAGCTAACCCTGATTATGTTACTGTTGAAGCACGAGATCTGCGAGTCATGCCTGGCACTCTGGCAGCCAAATACGAGAGTCTTGGTGGTGAGGTGAAATGGATGGGGAAGCCTGATAAGGTGATCTATACATCAGCAATGTCCCTGGCAGGGGTTAATCCTCATGAATGTATCACAGTAGGTGATTCACTGCACCACGACATCAAAGGTGCAAACGCATCTAGAGTCGCTTCTGCATTCATTACTGGAGGGATTCATGCAACTGAACTTGGACTCAATGAGATTGGAGAAATCGCTGGAGAGGACGCCATCGATTCATTGTGCCGCAAGCATGGCTCCTATCCCACCTATGTTTTGCCTTCATTTACATGGTAGAAACACGGTATACCTTTGGGTAAATGCATCATCTGTGTCTCAGAACATGGTGCAGAAACCGTCAATTCCAGCAAGGTCATGCAGTATAATCAGTAATTGTGCTCTTGAGGTACCTGCTACTGTGCTCAACGTTTCCCATTTTCCTGAGTTGTTGGCAAAGGTCAAAACTGAGACCAGCAGAGTTCAGGATGAGAATAGTCTTATTTCCTTGCTGGATATACAAGATGGTGTCAAACTTACATGTGTTTTTTATGATTTGTTTTGCAATGGTTCCTTCTCTGAACCATTTGGATTTCATAGACAGATTACTGAGAATTACTCATGTTAGAGTTAAACACGTTATGCTAATAAGATCACTTATCAGTGACACACCCCTTGTACATCAAATTTCATTGATGAATATTAAACGAGCAAACCAT] [+] EMBL AK121886 [ CGGACTTCTACCCACTCTCCTCTCTCCCCTTCCCTCCCTCCTCCCTGCTGGGCTTCGGGCGGCGGCGGCGGCGGCGGTGGGGGTGGATGGCCTCCGCGGCATCGGCGCCGGCGTTCGAGAGGCTGGCCGGGATCCGGGCACTGGCGGAGTCCGGCCGCTTCAAGGCGTGGTTCCTCGATCAGTTTGGTGTTCTTCACGATGGGAAGAAGCCTTACCCTGGTGCCGTTCTCGCGTTGGAGAAGCTCGCTGAGAAAGGGGCGAAGATGGTAATCATTAGCAATTCGTCGAGGAGGTCGTCTGTAACCATGGAGAAGCTAGAGAGCCTTGGTTTTGACCCATCCTGTTTCCTCAGGGCCATTACTAGCGGGGAACTCACACATCAGTACCTTCAGAAGAGAGATGATCCTTGGTTTGCAGCTCTTGGAAGAAAGTGCGTCCATCTGACATGGGGCAATCGAGGCGCAATTTCTCTGGAGGGCCTTGGTTTGCAAGTCGTGAGCAATGTCGAAGAGGCAGAGTTTATATTAGCCCATGGTACTGAGGCCCTGGGTCTACCTTCAGGGGACCCACTTCCCAAAAGTCTTGAGGAGCTTGAGCAGGTTCTAATGCTATGCCTAGAAAAGCGACTGCCAATGGTAGTAGCTAACCCTGATTATGTTACTGTTGAAGCACGAGATCTGCGAGTCATGCCTGGCACTCTGGCAGCCAAATACGAGAGTCTTGGTGGTGAGGTGAAATGGATGGGGAAGCCTGATAAGGTGATCTATACATCAGCAATGTCCCTGGCAGGGGTTAATCCTCATGAATGTATCACAGTAGGTGATTCACTGCACCACGACATCAAAGGTGCAAACGCATCTAGAGTCGCTTCTGCATTCATTACTGGAGGGATTCATGCAACTGAACTTGGACTCAATGAGATTGGAGAAATCGCTGGAGAGGACGCCATCGATTCATTGTGCCGCAAGCATGGCTCCTATCCCACCTATGTTTTGCCTTCATTTACATGGTAGAAACACGGTATACCTTTGGGTAAATGCATCATCTGTGTCTCAGAACATGGTGCAGAAACCGTCAATTCCAGCAAGGTCATGCAGTATAATCAGTAATTGTGCTCTTGAGGTACCTGCTACTGTGCTCAACGTTTCCCATTTTCCTGAGTTGTTGGCAAAGGTCAAAACTGAGACCAGCAGAGTTCAGGATGAGAATAGTCTTATTTCCTTGCTGGATATACAAGATGGTGTCAAACTTACATGTGTTTTTTATGATTTGTTTTGCAATGGTTCCTTCTCTGAACCATTTGGATTTCATAGACAGATTACTGAGAATTACTCATGTTAGAGTTAAACACGTTATGCTAATAAGATCACTTATCAGTGACACACCCCTTGTACATCAAATTTCATTGATGAATATTAAACGAGCAAACCAT] [+] EMBL CB654630 [ TCCCTCCTGGGCTTCGGGCGGCGGCGGCGGCGGCGGTGGGGGTGGATGGCCTCCGCGGCATCGGCGCCGGCGTTCGAGAGGCTGGCCGGGATCCGGGCACTGGCGGAGTCCGGCCGCTTCAAGGCGTGGTTCCTCGATCAGTTTGGTGTTCTTCACGATGGGAAGAAGCCTTACCCTGGTGCCGTTCTCGCGTTGGAGAAGCTCGCTGAGAAAGGGGCGAAGATGGTAATCATTAGCAATTCGTCGAGGAGGTCGTCTGTAACCATGGAGAAGCTAGAGAGCCTTGGTTTTGACCCATCCTGTTTCCTCAGGGCCATTACTAGCGGGGAACTCACACATCAGTACCTTCAGAAGAGAGATGATCCTTGGTTTGCAGCTCTTGGAAGAAAGTGCGTCCATCTGACATGGGGCAATCGAGGCGCAATTTCTCTGGAGGGCCTTGGTTTGCAAGTCGTGAGCAATGTCGAAGAGGCAGAGTTTATATTAGCCCATGGTACTGAGGCCCTGGGTCTACCTTCAGGGGATCCACTTCCCAAAAGTCTTGAGGAGCTTGAGCAGGTTCTAATGCTATGCCTAGAAAAGCGACTGCCAATGGTAGTAGCTAACCCTGATTATGTTACTGTTGAAGCACGAGATCTGCGAGTCATGCCTGGCACTCTGGCAGCCAAATACGAGAGTCTTGGTGGTGAGGTGAAATGGATGGGGAAGCCTGATAAGGTGATCTATACATCAGCAATGTCCCTGGCAGGGGTTTATCCTCATGA ] [-] EMBL CB654631 [ ATCCTCATGAATGTATCACAGTAGGTGATTCACTGCCCCACGACATCAAAGGGGCAAAGGCATCTAGAGTCGCTTTTGCATTCATTACTGGAGGGATTCATGCAACTGAACTTGGACTCAATGAGATTGGAGAAATCGCTGGAGAGGACGCCATCGATTCATTGTGCCGCAAGCATGGCTCCTATCCCCCCTATGTTTTGCCTTCATTTACATGGTAGAAACCCGGTATCCCTTGGGGTAAATGCATCATCTGTGTTTCAGAACATGGTGCAGAAACCGTCAATTCCAGCAAGGTCATGCAGTATAATCAGTAATTGTGCTCTGGAGGTACCTGTTACTGTGCTCAACGTTTCCCATTTTCCTGAGTTGTTGGCAAAGGTCAAAACTGAGACCAGCAGAGTTCAGGAGGAGAATAGTTTTATTTCCTTGCGGGATATACAAGAGGGTGTCAAACTTACAGGGGTTTTTTATGATTTGTTTTGCAAGGGTTCCTTTTTTGACCCATTTGGATTTCATAGACAGATTACGGAGAATTACTCATGTTAGAGTTAAACCCGTTATGCTAATAAGATCACTg ] consensusID : consensus_7910#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence [GCCAGAGACAAGGGGGTCTTGGTGGTGAGGTGAAATGGATGGGGAAGCCTGATAAGGTGATCTATACATCAGCAATGTCCCTGGCAGGGGTTAATCCTCATGAATGTATCACAGTAGGTGATTCACTGCACCACGACATCAAAGGTGCAAACGCATCTAGAGTCGCTTCTGCATTCATTACTGGAGGGATTCATGCAACTGAACTTGGACTCAATGAGATTGGAGAAATCGCTGTAGAGGACGCCATCGATTCATTGTGCCGCAAGCATGGCTCCTATCCCACCTATGTTTTGCCTTCATTTACATGGTAGAAACACGGTATACCTTTGGGTAAATGCATCATNTGCGTCTCAGAACATGGTGCAGAAACCGTCAATTCCAGCAAGGTCATGCAGTATAATCAGTAATTGTGCTCTTGAGGTACCTGCTACTGTGCTCAACGTTTCCCATTTTCCTGAGTTGTTGGCAAAGGTCAAAACTGAGACCAGCAGAGTTCAGGATGAGAATAGTCTTATTTCCTTGCTGGATATACAAGATGGTGTCAAACTTACATGTGTTTTTTATGATTTGTTTTGCAATGGTTCCTTCTCTGAACCATTTGGATTTCATAGACAGATTACTGAGAATTACTCATGTTAGAGTTAAACACGTTATGCTAATAAGATCACTTATCAGTGNCCCAAAAAAAAAAA] [-] EMBL CA763334 [GCCAGAGACAAGGGGGTCTTGGTGGTGAGGTGAAATGGATGGGGAAGCCTGATAAGGTGATCTATACATCAGCAATGTCCCTGGCAGGGGTTAATCCTCATGAATGTATCACAGTAGGTGATTCACTGCACCACGACATCAAAGGTGCAAACGCATCTAGAGTCGCTTCTGCATTCATTACTGGAGGGATTCATGCAACTGAACTTGGACTCAATGAGATTGGAGAAATCGCTGTAGAGGACGCCATCGATTCATTGTGCCGCAAGCATGGCTCCTATCCCACCTATGTTTTGCCTTCATTTACATGGTAGAAACACGGTATACCTTTGGGTAAATGCATCATNTGCGTCTCAGAACATGGTGCAGAAACCGTCAATTCCAGCAAGGTCATGCAGTATAATCAGTAATTGTGCTCTTGAGGTACCTGCTACTGTGCTCAACGTTTCCCATTTTCCTGAGTTGTTGGCAAAGGTCAAAACTGAGACCAGCAGAGTTCAGGATGAGAATAGTCTTATTTCCTTGCTGGATATACAAGATGGTGTCAAACTTACATGTGTTTTTTATGATTTGTTTTGCAATGGTTCCTTCTCTGAACCATTTGGATTTCATAGACAGATTACTGAGAATTACTCATGTTAGAGTTAAACACGTTATGCTAATAAGATCACTTATCAGTGNCCCAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7910#0 CCATTTCGGACTTCTACCCACTCTCCTCTCTCCCCTTCCCTCCCTCCTCCCTGCTGGGCT 60 consensus_7910#1 ------------------------------------------------------------ consensus_7910#0 TCGGGCGGCGGCGGCGGCGGCGGTGGGGGTGGATGGCCTCCGCGGCATCGGCGCCGGCGT 120 consensus_7910#1 ------------------------------------------------------------ consensus_7910#0 TCGAGAGGCTGGCCGGGATCCGGGCACTGGCGGAGTCCGGCCGCTTCAAGGCGTGGTTCC 180 consensus_7910#1 ------------------------------------------------------------ consensus_7910#0 TCGATCAGTTTGGTGTTCTTCACGATGGGAAGAAGCCTTACCCTGGTGCCGTTCTCGCGT 240 consensus_7910#1 ------------------------------------------------------------ consensus_7910#0 TGGAGAAGCTCGCTGAGAAAGGGGCGAAGATGGTAATCATTAGCAATTCGTCGAGGAGGT 300 consensus_7910#1 ------------------------------------------------------------ consensus_7910#0 CGTCTGTAACCATGGAGAAGCTAGAGAGCCTTGGTTTTGACCCATCCTGTTTCCTCAGGG 360 consensus_7910#1 ------------------------------------------------------------ consensus_7910#0 CCATTACTAGCGGGGAACTCACACATCAGTACCTTCAGAAGAGAGATGATCCTTGGTTTG 420 consensus_7910#1 ------------------------------------------------------------ consensus_7910#0 CAGCTCTTGGAAGAAAGTGCGTCCATCTGACATGGGGCAATCGAGGCGCAATTTCTCTGG 480 consensus_7910#1 ------------------------------------------------------------ consensus_7910#0 AGGGCCTTGGTTTGCAAGTCGTGAGCAATGTCGAAGAGGCAGAGTTTATATTAGCCCATG 540 consensus_7910#1 ------------------------------------------------------------ consensus_7910#0 GTACTGAGGCCCTGGGTCTACCTTCAGGGGATCCACTTCCCAAAAGTCTTGAGGAGCTTG 600 consensus_7910#1 ------------------------------------------------------------ consensus_7910#0 AGCAGGTTCTAATGCTATGCCTAGAAAAGCGACTGCCAATGGTAGTAGCTAACCCTGATT 660 consensus_7910#1 ------------------------------------------------------------ consensus_7910#0 ATGTTACTGTTGAAGCACGAGATCTGCGAGTCATGCCTGGCACTCTGGCAGCCAAATACG 720 consensus_7910#1 ----------------------------------------------GCCAG--AGACAAG 12 * *** * * * * consensus_7910#0 AGAGTCTTGGTGGTGAGGTGAAATGGATGGGGAAGCCTGATAAGGTGATCTATACATCAG 780 consensus_7910#1 GGGGTCTTGGTGGTGAGGTGAAATGGATGGGGAAGCCTGATAAGGTGATCTATACATCAG 72 * ********************************************************* consensus_7910#0 CAATGTCCCTGGCAGGGGTTAATCCTCATGAATGTATCACAGTAGGTGATTCACTGCACC 840 consensus_7910#1 CAATGTCCCTGGCAGGGGTTAATCCTCATGAATGTATCACAGTAGGTGATTCACTGCACC 132 ************************************************************ consensus_7910#0 ACGACATCAAAGGTGCAAACGCATCTAGAGTCGCTTCTGCATTCATTACTGGAGGGATTC 900 consensus_7910#1 ACGACATCAAAGGTGCAAACGCATCTAGAGTCGCTTCTGCATTCATTACTGGAGGGATTC 192 ************************************************************ consensus_7910#0 ATGCAACTGAACTTGGACTCAATGAGATTGGAGAAATCGCTGGAGAGGACGCCATCGATT 960 consensus_7910#1 ATGCAACTGAACTTGGACTCAATGAGATTGGAGAAATCGCTGTAGAGGACGCCATCGATT 252 ****************************************** ***************** consensus_7910#0 CATTGTGCCGCAAGCATGGCTCCTATCCCACCTATGTTTTGCCTTCATTTACATGGTAGA 1020 consensus_7910#1 CATTGTGCCGCAAGCATGGCTCCTATCCCACCTATGTTTTGCCTTCATTTACATGGTAGA 312 ************************************************************ consensus_7910#0 AACACGGTATACCTTTGGGTAAATGCATCATCTGTGTCTCAGAACATGGTGCAGAAACCG 1080 consensus_7910#1 AACACGGTATACCTTTGGGTAAATGCATCATNTGCGTCTCAGAACATGGTGCAGAAACCG 372 ******************************* ** ************************* consensus_7910#0 TCAATTCCAGCAAGGTCATGCAGTATAATCAGTAATTGTGCTCTTGAGGTACCTGCTACT 1140 consensus_7910#1 TCAATTCCAGCAAGGTCATGCAGTATAATCAGTAATTGTGCTCTTGAGGTACCTGCTACT 432 ************************************************************ consensus_7910#0 GTGCTCAACGTTTCCCATTTTCCTGAGTTGTTGGCAAAGGTCAAAACTGAGACCAGCAGA 1200 consensus_7910#1 GTGCTCAACGTTTCCCATTTTCCTGAGTTGTTGGCAAAGGTCAAAACTGAGACCAGCAGA 492 ************************************************************ consensus_7910#0 GTTCAGGATGAGAATAGTCTTATTTCCTTGCTGGATATACAAGATGGTGTCAAACTTACA 1260 consensus_7910#1 GTTCAGGATGAGAATAGTCTTATTTCCTTGCTGGATATACAAGATGGTGTCAAACTTACA 552 ************************************************************ consensus_7910#0 TGTGTTTTTTATGATTTGTTTTGCAATGGTTCCTTCTCTGAACCATTTGGATTTCATAGA 1320 consensus_7910#1 TGTGTTTTTTATGATTTGTTTTGCAATGGTTCCTTCTCTGAACCATTTGGATTTCATAGA 612 ************************************************************ consensus_7910#0 CAGATTACTGAGAATTACTCATGTTAGAGTTAAACACGTTATGCTAATAAGATCACTTAT 1380 consensus_7910#1 CAGATTACTGAGAATTACTCATGTTAGAGTTAAACACGTTATGCTAATAAGATCACTTAT 672 ************************************************************ consensus_7910#0 CAGTGACACACCCCTTGTACATCAAATTTCATTGATGAATATTAAACGAGCAAACCAT 1438 consensus_7910#1 CAGTGNCCCA------AAAAAAAAAA-------------------------------- 692 ***** * ** * * *** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||