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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7910#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1438 fasta sequence
[CCATTTCGGACTTCTACCCACTCTCCTCTCTCCCCTTCCCTCCCTCCTCCCTGCTGGGCTTCGGGCGGCGGCGGCGGCGGCGGTGGGGGTGGATGGCCTCCGCGGCATCGGCGCCGGCGTTCGAGAGGCTGGCCGGGATCCGGGCACTGGCGGAGTCCGGCCGCTTCAAGGCGTGGTTCCTCGATCAGTTTGGTGTTCTTCACGATGGGAAGAAGCCTTACCCTGGTGCCGTTCTCGCGTTGGAGAAGCTCGCTGAGAAAGGGGCGAAGATGGTAATCATTAGCAATTCGTCGAGGAGGTCGTCTGTAACCATGGAGAAGCTAGAGAGCCTTGGTTTTGACCCATCCTGTTTCCTCAGGGCCATTACTAGCGGGGAACTCACACATCAGTACCTTCAGAAGAGAGATGATCCTTGGTTTGCAGCTCTTGGAAGAAAGTGCGTCCATCTGACATGGGGCAATCGAGGCGCAATTTCTCTGGAGGGCCTTGGTTTGCAAGTCGTGAGCAATGTCGAAGAGGCAGAGTTTATATTAGCCCATGGTACTGAGGCCCTGGGTCTACCTTCAGGGGATCCACTTCCCAAAAGTCTTGAGGAGCTTGAGCAGGTTCTAATGCTATGCCTAGAAAAGCGACTGCCAATGGTAGTAGCTAACCCTGATTATGTTACTGTTGAAGCACGAGATCTGCGAGTCATGCCTGGCACTCTGGCAGCCAAATACGAGAGTCTTGGTGGTGAGGTGAAATGGATGGGGAAGCCTGATAAGGTGATCTATACATCAGCAATGTCCCTGGCAGGGGTTAATCCTCATGAATGTATCACAGTAGGTGATTCACTGCACCACGACATCAAAGGTGCAAACGCATCTAGAGTCGCTTCTGCATTCATTACTGGAGGGATTCATGCAACTGAACTTGGACTCAATGAGATTGGAGAAATCGCTGGAGAGGACGCCATCGATTCATTGTGCCGCAAGCATGGCTCCTATCCCACCTATGTTTTGCCTTCATTTACATGGTAGAAACACGGTATACCTTTGGGTAAATGCATCATCTGTGTCTCAGAACATGGTGCAGAAACCGTCAATTCCAGCAAGGTCATGCAGTATAATCAGTAATTGTGCTCTTGAGGTACCTGCTACTGTGCTCAACGTTTCCCATTTTCCTGAGTTGTTGGCAAAGGTCAAAACTGAGACCAGCAGAGTTCAGGATGAGAATAGTCTTATTTCCTTGCTGGATATACAAGATGGTGTCAAACTTACATGTGTTTTTTATGATTTGTTTTGCAATGGTTCCTTCTCTGAACCATTTGGATTTCATAGACAGATTACTGAGAATTACTCATGTTAGAGTTAAACACGTTATGCTAATAAGATCACTTATCAGTGACACACCCCTTGTACATCAAATTTCATTGATGAATATTAAACGAGCAAACCAT]
[+] EMBL AK058496 [CCATTTCGGACTTCTACCCACTCTCCTCTCTCCCCTTCCCTCCCTCCTCCCTGCTGGGCTTCGGGCGGCGGCGGCGGCGGCGGTGGGGGTGGATGGCCTCCGCGGCATCGGCGCCGGCGTTCGAGAGGCTGGCCGGGATCCGGGCACTGGCGGAGTCCGGCCGCTTCAAGGCGTGGTTCCTCGATCAGTTTGGTGTTCTTCACGATGGGAAGAAGCCTTACCCTGGTGCCGTTCTCGCGTTGGAGAAGCTCGCTGAGAAAGGGGCGAAGATGGTAATCATTAGCAATTCGTCGAGGAGGTCGTCTGTAACCATGGAGAAGCTAGAGAGCCTTGGTTTTGACCCATCCTGTTTCCTCAGGGCCATTACTAGCGGGGAACTCACACATCAGTACCTTCAGAAGAGAGATGATCCTTGGTTTGCAGCTCTTGGAAGAAAGTGCGTCCATCTGACATGGGGCAATCGAGGCGCAATTTCTCTGGAGGGCCTTGGTTTGCAAGTCGTGAGCAATGTCGAAGAGGCAGAGTTTATATTAGCCCATGGTACTGAGGCCCTGGGTCTACCTTCAGGGGATCCACTTCCCAAAAGTCTTGAGGAGCTTGAGCAGGTTCTAATGCTATGCCTAGAAAAGCGACTGCCAATGGTAGTAGCTAACCCTGATTATGTTACTGTTGAAGCACGAGATCTGCGAGTCATGCCTGGCACTCTGGCAGCCAAATACGAGAGTCTTGGTGGTGAGGTGAAATGGATGGGGAAGCCTGATAAGGTGATCTATACATCAGCAATGTCCCTGGCAGGGGTTAATCCTCATGAATGTATCACAGTAGGTGATTCACTGCACCACGACATCAAAGGTGCAAACGCATCTAGAGTCGCTTCTGCATTCATTACTGGAGGGATTCATGCAACTGAACTTGGACTCAATGAGATTGGAGAAATCGCTGGAGAGGACGCCATCGATTCATTGTGCCGCAAGCATGGCTCCTATCCCACCTATGTTTTGCCTTCATTTACATGGTAGAAACACGGTATACCTTTGGGTAAATGCATCATCTGTGTCTCAGAACATGGTGCAGAAACCGTCAATTCCAGCAAGGTCATGCAGTATAATCAGTAATTGTGCTCTTGAGGTACCTGCTACTGTGCTCAACGTTTCCCATTTTCCTGAGTTGTTGGCAAAGGTCAAAACTGAGACCAGCAGAGTTCAGGATGAGAATAGTCTTATTTCCTTGCTGGATATACAAGATGGTGTCAAACTTACATGTGTTTTTTATGATTTGTTTTGCAATGGTTCCTTCTCTGAACCATTTGGATTTCATAGACAGATTACTGAGAATTACTCATGTTAGAGTTAAACACGTTATGCTAATAAGATCACTTATCAGTGACACACCCCTTGTACATCAAATTTCATTGATGAATATTAAACGAGCAAACCAT]
[+] EMBL AK121886 [ CGGACTTCTACCCACTCTCCTCTCTCCCCTTCCCTCCCTCCTCCCTGCTGGGCTTCGGGCGGCGGCGGCGGCGGCGGTGGGGGTGGATGGCCTCCGCGGCATCGGCGCCGGCGTTCGAGAGGCTGGCCGGGATCCGGGCACTGGCGGAGTCCGGCCGCTTCAAGGCGTGGTTCCTCGATCAGTTTGGTGTTCTTCACGATGGGAAGAAGCCTTACCCTGGTGCCGTTCTCGCGTTGGAGAAGCTCGCTGAGAAAGGGGCGAAGATGGTAATCATTAGCAATTCGTCGAGGAGGTCGTCTGTAACCATGGAGAAGCTAGAGAGCCTTGGTTTTGACCCATCCTGTTTCCTCAGGGCCATTACTAGCGGGGAACTCACACATCAGTACCTTCAGAAGAGAGATGATCCTTGGTTTGCAGCTCTTGGAAGAAAGTGCGTCCATCTGACATGGGGCAATCGAGGCGCAATTTCTCTGGAGGGCCTTGGTTTGCAAGTCGTGAGCAATGTCGAAGAGGCAGAGTTTATATTAGCCCATGGTACTGAGGCCCTGGGTCTACCTTCAGGGGACCCACTTCCCAAAAGTCTTGAGGAGCTTGAGCAGGTTCTAATGCTATGCCTAGAAAAGCGACTGCCAATGGTAGTAGCTAACCCTGATTATGTTACTGTTGAAGCACGAGATCTGCGAGTCATGCCTGGCACTCTGGCAGCCAAATACGAGAGTCTTGGTGGTGAGGTGAAATGGATGGGGAAGCCTGATAAGGTGATCTATACATCAGCAATGTCCCTGGCAGGGGTTAATCCTCATGAATGTATCACAGTAGGTGATTCACTGCACCACGACATCAAAGGTGCAAACGCATCTAGAGTCGCTTCTGCATTCATTACTGGAGGGATTCATGCAACTGAACTTGGACTCAATGAGATTGGAGAAATCGCTGGAGAGGACGCCATCGATTCATTGTGCCGCAAGCATGGCTCCTATCCCACCTATGTTTTGCCTTCATTTACATGGTAGAAACACGGTATACCTTTGGGTAAATGCATCATCTGTGTCTCAGAACATGGTGCAGAAACCGTCAATTCCAGCAAGGTCATGCAGTATAATCAGTAATTGTGCTCTTGAGGTACCTGCTACTGTGCTCAACGTTTCCCATTTTCCTGAGTTGTTGGCAAAGGTCAAAACTGAGACCAGCAGAGTTCAGGATGAGAATAGTCTTATTTCCTTGCTGGATATACAAGATGGTGTCAAACTTACATGTGTTTTTTATGATTTGTTTTGCAATGGTTCCTTCTCTGAACCATTTGGATTTCATAGACAGATTACTGAGAATTACTCATGTTAGAGTTAAACACGTTATGCTAATAAGATCACTTATCAGTGACACACCCCTTGTACATCAAATTTCATTGATGAATATTAAACGAGCAAACCAT]
[+] EMBL CB654630 [ TCCCTCCTGGGCTTCGGGCGGCGGCGGCGGCGGCGGTGGGGGTGGATGGCCTCCGCGGCATCGGCGCCGGCGTTCGAGAGGCTGGCCGGGATCCGGGCACTGGCGGAGTCCGGCCGCTTCAAGGCGTGGTTCCTCGATCAGTTTGGTGTTCTTCACGATGGGAAGAAGCCTTACCCTGGTGCCGTTCTCGCGTTGGAGAAGCTCGCTGAGAAAGGGGCGAAGATGGTAATCATTAGCAATTCGTCGAGGAGGTCGTCTGTAACCATGGAGAAGCTAGAGAGCCTTGGTTTTGACCCATCCTGTTTCCTCAGGGCCATTACTAGCGGGGAACTCACACATCAGTACCTTCAGAAGAGAGATGATCCTTGGTTTGCAGCTCTTGGAAGAAAGTGCGTCCATCTGACATGGGGCAATCGAGGCGCAATTTCTCTGGAGGGCCTTGGTTTGCAAGTCGTGAGCAATGTCGAAGAGGCAGAGTTTATATTAGCCCATGGTACTGAGGCCCTGGGTCTACCTTCAGGGGATCCACTTCCCAAAAGTCTTGAGGAGCTTGAGCAGGTTCTAATGCTATGCCTAGAAAAGCGACTGCCAATGGTAGTAGCTAACCCTGATTATGTTACTGTTGAAGCACGAGATCTGCGAGTCATGCCTGGCACTCTGGCAGCCAAATACGAGAGTCTTGGTGGTGAGGTGAAATGGATGGGGAAGCCTGATAAGGTGATCTATACATCAGCAATGTCCCTGGCAGGGGTTTATCCTCATGA ]
[-] EMBL CB654631 [ ATCCTCATGAATGTATCACAGTAGGTGATTCACTGCCCCACGACATCAAAGGGGCAAAGGCATCTAGAGTCGCTTTTGCATTCATTACTGGAGGGATTCATGCAACTGAACTTGGACTCAATGAGATTGGAGAAATCGCTGGAGAGGACGCCATCGATTCATTGTGCCGCAAGCATGGCTCCTATCCCCCCTATGTTTTGCCTTCATTTACATGGTAGAAACCCGGTATCCCTTGGGGTAAATGCATCATCTGTGTTTCAGAACATGGTGCAGAAACCGTCAATTCCAGCAAGGTCATGCAGTATAATCAGTAATTGTGCTCTGGAGGTACCTGTTACTGTGCTCAACGTTTCCCATTTTCCTGAGTTGTTGGCAAAGGTCAAAACTGAGACCAGCAGAGTTCAGGAGGAGAATAGTTTTATTTCCTTGCGGGATATACAAGAGGGTGTCAAACTTACAGGGGTTTTTTATGATTTGTTTTGCAAGGGTTCCTTTTTTGACCCATTTGGATTTCATAGACAGATTACGGAGAATTACTCATGTTAGAGTTAAACCCGTTATGCTAATAAGATCACTg ]
consensusID : consensus_7910#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence
[GCCAGAGACAAGGGGGTCTTGGTGGTGAGGTGAAATGGATGGGGAAGCCTGATAAGGTGATCTATACATCAGCAATGTCCCTGGCAGGGGTTAATCCTCATGAATGTATCACAGTAGGTGATTCACTGCACCACGACATCAAAGGTGCAAACGCATCTAGAGTCGCTTCTGCATTCATTACTGGAGGGATTCATGCAACTGAACTTGGACTCAATGAGATTGGAGAAATCGCTGTAGAGGACGCCATCGATTCATTGTGCCGCAAGCATGGCTCCTATCCCACCTATGTTTTGCCTTCATTTACATGGTAGAAACACGGTATACCTTTGGGTAAATGCATCATNTGCGTCTCAGAACATGGTGCAGAAACCGTCAATTCCAGCAAGGTCATGCAGTATAATCAGTAATTGTGCTCTTGAGGTACCTGCTACTGTGCTCAACGTTTCCCATTTTCCTGAGTTGTTGGCAAAGGTCAAAACTGAGACCAGCAGAGTTCAGGATGAGAATAGTCTTATTTCCTTGCTGGATATACAAGATGGTGTCAAACTTACATGTGTTTTTTATGATTTGTTTTGCAATGGTTCCTTCTCTGAACCATTTGGATTTCATAGACAGATTACTGAGAATTACTCATGTTAGAGTTAAACACGTTATGCTAATAAGATCACTTATCAGTGNCCCAAAAAAAAAAA]
[-] EMBL CA763334 [GCCAGAGACAAGGGGGTCTTGGTGGTGAGGTGAAATGGATGGGGAAGCCTGATAAGGTGATCTATACATCAGCAATGTCCCTGGCAGGGGTTAATCCTCATGAATGTATCACAGTAGGTGATTCACTGCACCACGACATCAAAGGTGCAAACGCATCTAGAGTCGCTTCTGCATTCATTACTGGAGGGATTCATGCAACTGAACTTGGACTCAATGAGATTGGAGAAATCGCTGTAGAGGACGCCATCGATTCATTGTGCCGCAAGCATGGCTCCTATCCCACCTATGTTTTGCCTTCATTTACATGGTAGAAACACGGTATACCTTTGGGTAAATGCATCATNTGCGTCTCAGAACATGGTGCAGAAACCGTCAATTCCAGCAAGGTCATGCAGTATAATCAGTAATTGTGCTCTTGAGGTACCTGCTACTGTGCTCAACGTTTCCCATTTTCCTGAGTTGTTGGCAAAGGTCAAAACTGAGACCAGCAGAGTTCAGGATGAGAATAGTCTTATTTCCTTGCTGGATATACAAGATGGTGTCAAACTTACATGTGTTTTTTATGATTTGTTTTGCAATGGTTCCTTCTCTGAACCATTTGGATTTCATAGACAGATTACTGAGAATTACTCATGTTAGAGTTAAACACGTTATGCTAATAAGATCACTTATCAGTGNCCCAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7910#0 CCATTTCGGACTTCTACCCACTCTCCTCTCTCCCCTTCCCTCCCTCCTCCCTGCTGGGCT 60
consensus_7910#1 ------------------------------------------------------------
consensus_7910#0 TCGGGCGGCGGCGGCGGCGGCGGTGGGGGTGGATGGCCTCCGCGGCATCGGCGCCGGCGT 120
consensus_7910#1 ------------------------------------------------------------
consensus_7910#0 TCGAGAGGCTGGCCGGGATCCGGGCACTGGCGGAGTCCGGCCGCTTCAAGGCGTGGTTCC 180
consensus_7910#1 ------------------------------------------------------------
consensus_7910#0 TCGATCAGTTTGGTGTTCTTCACGATGGGAAGAAGCCTTACCCTGGTGCCGTTCTCGCGT 240
consensus_7910#1 ------------------------------------------------------------
consensus_7910#0 TGGAGAAGCTCGCTGAGAAAGGGGCGAAGATGGTAATCATTAGCAATTCGTCGAGGAGGT 300
consensus_7910#1 ------------------------------------------------------------
consensus_7910#0 CGTCTGTAACCATGGAGAAGCTAGAGAGCCTTGGTTTTGACCCATCCTGTTTCCTCAGGG 360
consensus_7910#1 ------------------------------------------------------------
consensus_7910#0 CCATTACTAGCGGGGAACTCACACATCAGTACCTTCAGAAGAGAGATGATCCTTGGTTTG 420
consensus_7910#1 ------------------------------------------------------------
consensus_7910#0 CAGCTCTTGGAAGAAAGTGCGTCCATCTGACATGGGGCAATCGAGGCGCAATTTCTCTGG 480
consensus_7910#1 ------------------------------------------------------------
consensus_7910#0 AGGGCCTTGGTTTGCAAGTCGTGAGCAATGTCGAAGAGGCAGAGTTTATATTAGCCCATG 540
consensus_7910#1 ------------------------------------------------------------
consensus_7910#0 GTACTGAGGCCCTGGGTCTACCTTCAGGGGATCCACTTCCCAAAAGTCTTGAGGAGCTTG 600
consensus_7910#1 ------------------------------------------------------------
consensus_7910#0 AGCAGGTTCTAATGCTATGCCTAGAAAAGCGACTGCCAATGGTAGTAGCTAACCCTGATT 660
consensus_7910#1 ------------------------------------------------------------
consensus_7910#0 ATGTTACTGTTGAAGCACGAGATCTGCGAGTCATGCCTGGCACTCTGGCAGCCAAATACG 720
consensus_7910#1 ----------------------------------------------GCCAG--AGACAAG 12
* *** * * * *
consensus_7910#0 AGAGTCTTGGTGGTGAGGTGAAATGGATGGGGAAGCCTGATAAGGTGATCTATACATCAG 780
consensus_7910#1 GGGGTCTTGGTGGTGAGGTGAAATGGATGGGGAAGCCTGATAAGGTGATCTATACATCAG 72
* *********************************************************
consensus_7910#0 CAATGTCCCTGGCAGGGGTTAATCCTCATGAATGTATCACAGTAGGTGATTCACTGCACC 840
consensus_7910#1 CAATGTCCCTGGCAGGGGTTAATCCTCATGAATGTATCACAGTAGGTGATTCACTGCACC 132
************************************************************
consensus_7910#0 ACGACATCAAAGGTGCAAACGCATCTAGAGTCGCTTCTGCATTCATTACTGGAGGGATTC 900
consensus_7910#1 ACGACATCAAAGGTGCAAACGCATCTAGAGTCGCTTCTGCATTCATTACTGGAGGGATTC 192
************************************************************
consensus_7910#0 ATGCAACTGAACTTGGACTCAATGAGATTGGAGAAATCGCTGGAGAGGACGCCATCGATT 960
consensus_7910#1 ATGCAACTGAACTTGGACTCAATGAGATTGGAGAAATCGCTGTAGAGGACGCCATCGATT 252
****************************************** *****************
consensus_7910#0 CATTGTGCCGCAAGCATGGCTCCTATCCCACCTATGTTTTGCCTTCATTTACATGGTAGA 1020
consensus_7910#1 CATTGTGCCGCAAGCATGGCTCCTATCCCACCTATGTTTTGCCTTCATTTACATGGTAGA 312
************************************************************
consensus_7910#0 AACACGGTATACCTTTGGGTAAATGCATCATCTGTGTCTCAGAACATGGTGCAGAAACCG 1080
consensus_7910#1 AACACGGTATACCTTTGGGTAAATGCATCATNTGCGTCTCAGAACATGGTGCAGAAACCG 372
******************************* ** *************************
consensus_7910#0 TCAATTCCAGCAAGGTCATGCAGTATAATCAGTAATTGTGCTCTTGAGGTACCTGCTACT 1140
consensus_7910#1 TCAATTCCAGCAAGGTCATGCAGTATAATCAGTAATTGTGCTCTTGAGGTACCTGCTACT 432
************************************************************
consensus_7910#0 GTGCTCAACGTTTCCCATTTTCCTGAGTTGTTGGCAAAGGTCAAAACTGAGACCAGCAGA 1200
consensus_7910#1 GTGCTCAACGTTTCCCATTTTCCTGAGTTGTTGGCAAAGGTCAAAACTGAGACCAGCAGA 492
************************************************************
consensus_7910#0 GTTCAGGATGAGAATAGTCTTATTTCCTTGCTGGATATACAAGATGGTGTCAAACTTACA 1260
consensus_7910#1 GTTCAGGATGAGAATAGTCTTATTTCCTTGCTGGATATACAAGATGGTGTCAAACTTACA 552
************************************************************
consensus_7910#0 TGTGTTTTTTATGATTTGTTTTGCAATGGTTCCTTCTCTGAACCATTTGGATTTCATAGA 1320
consensus_7910#1 TGTGTTTTTTATGATTTGTTTTGCAATGGTTCCTTCTCTGAACCATTTGGATTTCATAGA 612
************************************************************
consensus_7910#0 CAGATTACTGAGAATTACTCATGTTAGAGTTAAACACGTTATGCTAATAAGATCACTTAT 1380
consensus_7910#1 CAGATTACTGAGAATTACTCATGTTAGAGTTAAACACGTTATGCTAATAAGATCACTTAT 672
************************************************************
consensus_7910#0 CAGTGACACACCCCTTGTACATCAAATTTCATTGATGAATATTAAACGAGCAAACCAT 1438
consensus_7910#1 CAGTGNCCCA------AAAAAAAAAA-------------------------------- 692
***** * ** * * ***
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||