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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7920#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 844 fasta sequence
[CTCGTGAGCTCGCCCCTGCGCCGCCTGCGCCGATCTCCATCCCGCGAGCGAGCAGGGGCGCCCGGCGCTGGCGCCGTCGTTCGTCCTGTTGCTTCCGCCCGCATCCTGGTGAGCATCCATCCGTTACCCTACGCGCACCCTCTTCCTCATCTCTCTCTGGTCTCTTCCCACGCACTTCTTCTCGAATTTGCGTTGAACCCTATAGATTCTGTTCTAGAAATTTGCCTTAATCTGAATAACTAGTAACAGTTTGTTTGTTCCCCCAAGTAGTTTGGGGCTTCAATTGAACCCCCTTGTCGGTCCCACGCTAGATCCGCTCCTGCTAGTGTCTGAATTGTTCATCTTGTTTTTAGTACAGAATTACCAGTTCTTACCCCATTTTTTGTGCTAATTTTCGCATCGGAACAGAAACCCTTTCGTTTGTCAAACTCTCTATTGTTGTTTTAATAGATGCCCCTAACTATCAAGGATAATAGTATCTGTGGAATAATGGGATTAATTATTTCTGGCACACCATTTACTCTCTCTCTGTCTCTCTCTAAATTTCACCTGGCATAGCAGCATGCCAGCATAATGCATTTTTTCACCTTTCTCTTGAATACTGTTTTCTCTTTACGGATTAAGGAAAACATTATTGTACAGACAGTGCTCGTTTCAGAATAAATGGGAGATAGGGAAAGACGAACTGTGTTTGTCACAGTAGGGACCACGTGTTTTGATGCTCTTGTCAAGGCAGTAGATTCCCCGCAAGTCAAAGAAGCTCTACTGGAAAAGGTTATACTGATCTAATAATCAAATGGGCCGAGGTACATATGTTCCCATCTAGGTCAATGAATTTTCTCTT]
[+] EMBL CB663437 [CTCGTGAGCTCGCCCCTGCGCCGCCTGCGCCGATCTCCATCCCGCGAGCGAGCAGGGGCGCCCGGCGCTGGCGCCGTCGTTCGTCCTGTTGCTTCCGCCCGCATCCTGGTGAGCATCCATCCGTTACCCTACGCGCACCCTCTTCCTCATCTCTCTCTGGTCTCTTCCCACGCACTTCTTCTCGAATTTGCGTTGAACCCTATAGATTCTGTTCTAGAAATTTGCCTTAATCTGAATAACTAGTAACAGTTTGTTTGTTCCCCCAAGTAGTTTGGGGCTTCAATTGAACCCCCTTGTCGGTCCCACGCTAGATCCGCTCCTGCTAGTGTCTGAATTGTTCATCTTGTTTTTAGTACAGAATTACCAGTTCTTACCCCATTTTTTGTGCTAATTTTCGCATCGGAACAGAAACCCTTTCGTTTGTCAAACTCTCTATTGTTGTTTTAATAGATGCCCCTAACTATCAAGGATAATAGTATCTGTGGAATAATGGGATTAATTATTTCTGGCACACCATTTACTCTCTCTCTGTCTCTCTCTAAATTTCACCTGGCATAGCAGCATGCCAGCATAATGCATTTTTTCACCTTTCTCTTGAATACTGTTTTCTCTTTACGGATTAAGGAAAACATTATTGTACAGACAGTGCTCGTTTCAGAATAAATGGGAGATAGGGAAAGACGAACTGTGTTTGTCACAGTAGGGACCACGTGTTTTGATGCTCTTGTCAAGGCAGTAGATTCCCCGCAAGTCAAAGAAGCTCTACTGGAAAAGGTTATACTGATCTAATAATCAAATGGGCCGAGGTACATATGTTCCCATCTAGGTCAATGAATTTTCTCTT]
consensusID : consensus_7920#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 797 fasta sequence
[CTCCGCTTTTCAAACAATTCAAAGAGTTCTCTCGGATTACAATTGGTGAGTTGGAATCATACCAAAATGGTTGGGTATAGGCTTGCATGTGACATGCCACTATGAAACTTCACTTTTGTCAGCTACCTCTTCCATATGTGACTTCATTTTCTTACAACAGAAAAGGCGGGAATAAGAAAAAAAAAATCAGTCATCTGGGAAGCCAAAAAACTTGTTAATCAGCGATACAACTGGTTTGGCATCCCCTGGCACATAAGGGTTGAGAGTCTCTATGTCCATTTCCTGGATCGTCTCTCCTAGTGTTTGTGGGCTTGCACAGAAGAGGTGTTTCCTTGTAGCCAGTTCCTCTGCTAACTCACTCTGATGATTGTCCATCAAATCCTCATTTACAACAACAATTAGAGGTTTGCCATGTCGCAACGTCTCGAATATGCTTCCTGAACCTGCTAGAGCTCAATCTGGTTAATTGCAATCAGCATTGACAACTACTCCCTCAGTTTCATAATGTAAGAAGTAACAAAGATGCAAAATTGATGATATACTTGCTAAAATTCACAGTATTTATCCAGAGCACATATCAAGGCAGCACAGAATTTATGTAACATTTAATGAAATTTGACCATAACGGCAGGTAGAAATATTACAACTCTACCTAACAATAGCAAGTATGGTCAGCTTACTTAAATATTATGCTTCTTTGTACGCGTCAGATAAATATTGTGAAGCGAAGTAAAAATGGCATGTTTATTAGTTCAAATGAACTCAAATAGCAGTATGATCTAGAGGTGAAAAAACAT]
[+] EMBL CB663438 [CTCCGCTTTTCAAACAATTCAAAGAGTTCTCTCGGATTACAATTGGTGAGTTGGAATCATACCAAAATGGTTGGGTATAGGCTTGCATGTGACATGCCACTATGAAACTTCACTTTTGTCAGCTACCTCTTCCATATGTGACTTCATTTTCTTACAACAGAAAAGGCGGGAATAAGAAAAAAAAAATCAGTCATCTGGGAAGCCAAAAAACTTGTTAATCAGCGATACAACTGGTTTGGCATCCCCTGGCACATAAGGGTTGAGAGTCTCTATGTCCATTTCCTGGATCGTCTCTCCTAGTGTTTGTGGGCTTGCACAGAAGAGGTGTTTCCTTGTAGCCAGTTCCTCTGCTAACTCACTCTGATGATTGTCCATCAAATCCTCATTTACAACAACAATTAGAGGTTTGCCATGTCGCAACGTCTCGAATATGCTTCCTGAACCTGCTAGAGCTCAATCTGGTTAATTGCAATCAGCATTGACAACTACTCCCTCAGTTTCATAATGTAAGAAGTAACAAAGATGCAAAATTGATGATATACTTGCTAAAATTCACAGTATTTATCCAGAGCACATATCAAGGCAGCACAGAATTTATGTAACATTTAATGAAATTTGACCATAACGGCAGGTAGAAATATTACAACTCTACCTAACAATAGCAAGTATGGTCAGCTTACTTAAATATTATGCTTCTTTGTACGCGTCAGATAAATATTGTGAAGCGAAGTAAAAATGGCATGTTTATTAGTTCAAATGAACTCAAATAGCAGTATGATCTAGAGGTGAAAAAACAT]
consensusID : consensus_7920#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 717 fasta sequence
[CTTCCGTCGTCTCCTCCTCGTGAGCTCGCCCCTGCGCCGCCTGCGCCGATCTCCATCCCGCGAGCGAGCAGGGGCGCCCGGCGCTGGCGCCGTCGTTCGTCCTGTTGCTTCCGCCCGCATCCTGAATAAATGGGAGATAGGGAAAGACGAACTGTGTTTGTCACAGTAGGGACCACGTGTTTTGATGCTCTTGTCAAGGCAGTAGATTCCCCGCAAGTCAAAGAAGCTCTACTGGAAAAAGGTTATACTGATCTAATAATTCAAATGGGCCGAGGTCTCAGGAGATGGAACTCTTCAAGTTGATTATTTCACTTTTTCGCCAAGCATTGCTGATTATATAAGGGATGCTTCCCTGGTCATCAGTCATGCAGGTTCAGGAAGCATATTCGAGACGTTGCGACATGGCAAACCTCTAATTGTTGTTGTAAATGAGGATTTGATGGACAATCATCAGAGTGAGTTAGCAGAGGAACTGGCTACAAGGAAACACCTCTTCTGTGCAAGCCCACAAACACTAGGAGAGACGATCCAGGAAATGGACATAGAGACTCTCAACCCTTATGTGCCAGGGGATGCCAAACCAGTTGTATCGCTGATTAACAAGTTTTTTGGCTTCCCAGATGACTGATTTTTTTTTTCTTATTCCCGCCTTTTCTGTTGTAAGAAAATGAA-GTCACATATGGAAGAGGTAGCTGACAAAAGTGAAGTTTCATAGCG]
[+] EMBL AK121672 [CTTCCGTCGTCTCCTCCTCGTGAGCTCGCCCCTGCGCCGCCTGCGCCGATCTCCATCCCGCGAGCGAGCAGGGGCGCCCGGCGCTGGCGCCGTCGTTCGTCCTGTTGCTTCCGCCCGCATCCTGAATAAATGGGAGATAGGGAAAGACGAACTGTGTTTGTCACAGTAGGGACCACGTGTTTTGATGCTCTTGTCAAGGCAGTAGATTCCCCGCAAGTCAAAGAAGCTCTACTGGAAAAAGGTTATACTGATCTAATAATTCAAATGGGCCGAGGTCTCAGGAGATGGAACTCTTCAAGTTGATTATTTCACTTTTTCGCCAAGCATTGCTGATTATATAAGGGATGCTTCCCTGGTCATCAGTCATGCAGGTTCAGGAAGCATATTCGAGACGTTGCGACATGGCAAACCTCTAATTGTTGTTGTAAATGAGGATTTGATGGACAATCATCAGAGTGAGTTAGCAGAGGAACTGGCTACAAGGAAACACCTCTTCTGTGCAAGCCCACAAACACTAGGAGAGACGATCCAGGAAATGGACATAGAGACTCTCAACCCTTATGTGCCAGGGGATGCCAAACCAGTTGTATCGCTGATTAACAAGTTTTTTGGCTTCCCAGATGACTGATTTTTTTTTTCTTATTCCCGCCTTTTCTGTTGTAAGAAAATGAA GTCACATATGGAAGAGGTAGCTGACAAAAGTGAAGTTTCATA ]
[+] EMBL CA757867 [ AGGAAACACCTCTTCTGTGCAAGCCCACAAACACTAGGAGAGACGATCCAGGAAATGGACATAGAGACTCTCAACCCTTATGTGCCAGGGGATGCCAAACCAGTTGTATCNCTGATTAACAAGTTNTNTGGCTTNCCAGATGACTGATTNTTTTTTNCTTATTCCCGCCTTTTCTGTTGNNAGAAAATGAANGT ACATATGGAAGAGGTAGCTGACAANAGNGAAGTNNNATAGCG]
consensusID : consensus_7920#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 693 fasta sequence
[GTTTCATATGCATTTCCCTCCGTTTTCAAACAATTCAAAGAGTTCTCTCGGATTACACTTGGGGAGTTGGAATCATACCAAAATGGTTGGGTATAGGCTTGCATGTGACATGCCACTATGAAACTTCACTTTTGTCAGCTACCTCTTCCATATGGGACTTCATTTTCTTACAACAAAAAAGGCGGGAATAAAAAAAAAAAAAATCTGTCCTCTGGGAAGCCAAAAAACTTGTTAATCAGCGATACAACTGGTTTGGCATCCCCTGGCACATAAGGGTTGAAAGTCTCTATGTCCATTTCCTGGATCGTCTCTCCTAGTGTTTGGGGGCTTGCACAAAAGAGGGGTTTCCTTGAAGCCAGTTCCTCTGCTAACTCACTCTGATGATTGCCCATCAAATCCTCATTTACAACAACAATTAAAGGTTTGCCATGTCCCAACGTCTCGAATATGCTTCCTGAACCTGCATGACTGATGACCAGGGAAGCATCCCTTATATAATCAGCAATGCTTGGCGAAAAAGTGAAATAATCAACTTGAAGAGTTCCATCTCCTGAGACCTGTATTCAAATATATCAAAGTTTCTGGCTGGTTTCACTTCACTTTCACAACCATCAACATGGTGCTTACAAATGTTTCAGGTAGAACAGAGGAATCTCTAGCAGAGTAAAGCAATTATTATCTGCTAATATAACA]
[+] EMBL CB670537 [GTTTCATATGCATTTCCCTCCGTTTTCAAACAATTCAAAGAGTTCTCTCGGATTACACTTGGGGAGTTGGAATCATACCAAAATGGTTGGGTATAGGCTTGCATGTGACATGCCACTATGAAACTTCACTTTTGTCAGCTACCTCTTCCATATGGGACTTCATTTTCTTACAACAAAAAAGGCGGGAATAAAAAAAAAAAAAATCTGTCCTCTGGGAAGCCAAAAAACTTGTTAATCAGCGATACAACTGGTTTGGCATCCCCTGGCACATAAGGGTTGAAAGTCTCTATGTCCATTTCCTGGATCGTCTCTCCTAGTGTTTGGGGGCTTGCACAAAAGAGGGGTTTCCTTGAAGCCAGTTCCTCTGCTAACTCACTCTGATGATTGCCCATCAAATCCTCATTTACAACAACAATTAAAGGTTTGCCATGTCCCAACGTCTCGAATATGCTTCCTGAACCTGCATGACTGATGACCAGGGAAGCATCCCTTATATAATCAGCAATGCTTGGCGAAAAAGTGAAATAATCAACTTGAAGAGTTCCATCTCCTGAGACCTGTATTCAAATATATCAAAGTTTCTGGCTGGTTTCACTTCACTTTCACAACCATCAACATGGTGCTTACAAATGTTTCAGGTAGAACAGAGGAATCTCTAGCAGAGTAAAGCAATTATTATCTGCTAATATAACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7920#1 -----------------CTCCGCTTTTCAAACAATTCAAAGAGTTCTCTCGGATTACAAT 43
consensus_7920#3 GTTTCATATGCATTTCCCTCCG-TTTTCAAACAATTCAAAGAGTTCTCTCGGATTACACT 59
consensus_7920#2 -------CTTCCGTCGTCTCCTCCTCGTGAGCTCGCCCCTGCGCCGCCTGCGC---CGAT 50
consensus_7920#0 -----------------------CTCGTGAGCTCGCCCCTGCGCCGCCTGCGC---CGAT 34
* * * * * * ** * * *
consensus_7920#1 TGGTGAGTTGGAATCATACCAAAATGGTTGGGTATAG-GCTTGCATGTGACATGCCACTA 102
consensus_7920#3 TGGGGAGTTGGAATCATACCAAAATGGTTGGGTATAG-GCTTGCATGTGACATGCCACTA 118
consensus_7920#2 CTCCATCCCGCGAGCGAGCAGGGGCGCCCGGCGCTGGCGCCGTCGTTCGTCCTGTTGCT- 109
consensus_7920#0 CTCCATCCCGCGAGCGAGCAGGGGCGCCCGGCGCTGGCGCCGTCGTTCGTCCTGTTGCT- 93
* * * * * ** * * ** * * * * ** **
consensus_7920#1 TGAAACTTCACTTTT---GTCAGCTACCTCTTCC--ATATGTGACTTCATTTTCTTA--- 154
consensus_7920#3 TGAAACTTCACTTTT---GTCAGCTACCTCTTCC--ATATGGGACTTCATTTTCTTA--- 170
consensus_7920#2 TCCGCCCGCATCCTG---AATAAATGGGAGATAGGGAAAGACGAACTGTGTTTGTCA--- 163
consensus_7920#0 TCCGCCCGCATCCTGGTGAGCATCCATCCGTTACC-CTACGCGCACCCTCTTCCTCATCT 152
* * ** * * * * * ** * *
consensus_7920#1 CAACAGAAAA------GGCGGGAATA-----AGAAAA------AAAAAA-TCAGTCATCT 196
consensus_7920#3 CAACAAAAAA------GGCGGGAATA-----AAAAAA------AAAAAAATCTGTCCTCT 213
consensus_7920#2 CAGTAGGGAC------CACGTGTTTT-----GATGCTCTTGTCAAGGCAGTAGATTCCCC 212
consensus_7920#0 CTCTCTGGTCTCTTCCCACGCACTTCTTCTCGAATTTGCGTTGAACCCTATAGATTCTGT 212
* ** * ** * *
consensus_7920#1 GGGAAGCCAAAAAACT-TGTTAATCAGC-GATACAA-CTGGTTTGGCATCCC-------- 245
consensus_7920#3 GGGAAGCCAAAAAACT-TGTTAATCAGC-GATACAA-CTGGTTTGGCATCCC-------- 262
consensus_7920#2 GCAAGTCAAAGAAGCTCTACTGGAAAAA-GGTTATA-CTGATCTAATAATTCAAATGGGC 270
consensus_7920#0 TCTAGAAATTTGCCTTAATCTGAATAACTAGTAACAGTTTGTTTGTTCCCCCAAGTAGTT 272
* * * * * * * * * *
consensus_7920#1 CTGGCACATAAGGGTTGAGAGTCTCTATGTCCATTTCCTGGATCGTCTCTCCTA-----G 300
consensus_7920#3 CTGGCACATAAGGGTTGAAAGTCTCTATGTCCATTTCCTGGATCGTCTCTCCTA-----G 317
consensus_7920#2 CGAGGTCTCAGGAGATGGAACTCTTCAAGTTGATTATTTC-ACTTTTTCGCCAA-----G 324
consensus_7920#0 TGGGGCTTCAATTGAACCCCCTTGTCGGTCCCACGCTAGATCCGCTCCTGCTAGTGTCTG 332
* * * * * * * *
consensus_7920#1 TGTTTGTGGGCTTGCACAGAAGAGGTGTTTCCTTGT--------AGCCAGTTCCTCTGCT 352
consensus_7920#3 TGTTTGGGGGCTTGCACAAAAGAGGGGTTTCCTTGA--------AGCCAGTTCCTCTGCT 369
consensus_7920#2 CATTGCTGA--TTATATAAGGGATGC-TTCCCTGGT--------CATCAGTCATGCAGGT 373
consensus_7920#0 AATTGTTCATCTTGTTTTTAGTACAGAATTACCAGTTCTTACCCCATTTTTTGTGCTAAT 392
** ** * * * * * * *
consensus_7920#1 ------AACTCACTCTGATGATTGTC-CAT--CAAATCCTCATTTACAACAACAATTAGA 403
consensus_7920#3 ------AACTCACTCTGATGATTGCC-CAT--CAAATCCTCATTTACAACAACAATTAAA 420
consensus_7920#2 TCAGGAAGCATATTCGAGACGTTGCGACATGGCAAACCTCTAATTGTTGTTGTAAATGAG 433
consensus_7920#0 TTTCGCATCGGAACAGAAACCCTTTCGTTTGTCAAACTCTCTATTGTTGTTTTAATAGAT 452
* * * * * **** ** **
consensus_7920#1 G-----GTTTGCCATGTCGCAACGTCTCGAATATGCTTCCTGAACCTGCTAGAGCTCAA- 457
consensus_7920#3 G-----GTTTGCCATGTCCCAACGTCTCGAATATGCTTCCTGAACCTGCATGACTGATG- 474
consensus_7920#2 G-----ATTTG--ATGGACAATCATCA-GAGTGAGTTAGCAGAG---GAACTGGCTACA- 481
consensus_7920#0 GCCCCTAACTATCAAGGATAATAGTATCTGTGGAATAATGGGATTAATTATTTCTGGCAC 512
* * * * * * **
consensus_7920#1 TCTGGTTAATTGCAATCAGCATTGACAACTACTCC-CTCAGTTTCATAATGTAAGAA-GT 515
consensus_7920#3 ACCAGGGAAGCATCCCTTATATAATCAGCAATGC---TTGGCGAAAAAGTG----AA-AT 526
consensus_7920#2 AGGAAACACCTCTTCTGTGCAAGCCCACAAACAC---TAGGAGAGACGATCC---AG-GA 534
consensus_7920#0 ACCATTTACTCTCTCTCTGTCTCTCTCTAAATTTCACCTGGCATAGCAGCATGCCAGCAT 572
* * * *
consensus_7920#1 AACAAA---------------GATGCAAAAT-TGATG-ATATACTTGCTAAAATTCAC-- 556
consensus_7920#3 AATCAA---------------CTTGAAGAGT-TC-------CATCTCCTGAGACCTGT-- 561
consensus_7920#2 AATGGA---------------CATAGAGACTCTCAAC-CCTTATGTGCCAGGGGATGCCA 578
consensus_7920#0 AATGCATTTTTTCACCTTTCTCTTGAATACTGTTTTCTCTTTACGGATTAAGGAAAACAT 632
** * * * * * * *
consensus_7920#1 AGT-ATTTAT-CCA-----GAGCACATATCAAGGCAGCACAGAATTTATGTAACATTTAA 609
consensus_7920#3 ATTCAAATATATCA-----AAGTTTCTGGCT-GGTTTCACTTCACTTTCACAACCATCAA 615
consensus_7920#2 AACCAGTTGTATCGC---TGATTAACAAGTTTTTTGGCTTCCCAGATGACTGATTTTTTT 635
consensus_7920#0 TATTGTACAGACAGTGCTCGTTTCAGAATAAATGGGAGATAGGGAAAGACGAACTGTGTT 692
* *
consensus_7920#1 TGAAAT-TTG----ACCATAACGGCAGGTA-------GAAATATTACAACTCTACCTAAC 657
consensus_7920#3 CATGGTGCTT----ACAAATGTTTCAGGTA-------GAACAGAGGAATCTCTAGCAGAG 664
consensus_7920#2 TTTCTTATTC----CCGCCTTTTCTGTTGT-------AAGAAAATGAAGTCACATATGGA 684
consensus_7920#0 TGTCACAGTAGGGACCACGTGTTTTGATGCTCTTGTCAAGGCAGTAGATTCCCCGCAAGT 752
* * * *
consensus_7920#1 AATAGCAAGTATGGTCAGCTTACTTAAATATTATGCTTCTTTGTACGCGTCAGATAAATA 717
consensus_7920#3 TAAAGCAATTATTATCTGCTAATATAACA------------------------------- 693
consensus_7920#2 AGAGGTAGCTGACAAAAGTGAAGTTTCATAGCG--------------------------- 717
consensus_7920#0 CAAAGAAGCTCTACTGGAAAAGGTTATACTGATCTAATAATCAAATGGGCCGAGGTACAT 812
* * * *
consensus_7920#1 TTGTGAAGCGAAGTAAAAATGGCATGTTTATTAGTTCAAATGAACTCAAATAGCAGTATG 777
consensus_7920#3 ------------------------------------------------------------
consensus_7920#2 ------------------------------------------------------------
consensus_7920#0 ATGTTCCCATCTAGGTCAATGAATTTTCTCTT---------------------------- 844
consensus_7920#1 ATCTAGAGGTGAAAAAACAT 797
consensus_7920#3 --------------------
consensus_7920#2 --------------------
consensus_7920#0 --------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||