These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7921#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1035 fasta sequence [TGTGATGGAGTGGATTAGATCAGAGATCAAGAAGGAGCGCCCCAAGAATGACTGGATTGCAGGGGCAGCTATTACCAATCCAGCTGCAGACAGGAAGAAGCCAAAGAGGAGGGCACGAGAATGGTGGCGAGAAGAATATGCTGATGAGCTTGCGAAAAAGCAGAAACGACGTGCACTTGCTAAATCAAAGAGCGAGCAGGCAGGGTTGCAATGGTGGGAGCGGGATATTGACGATGACTTGGATGCAAAGGGACGATCCAAATGGAGTATGATGAAGAGCTGGAGTCGGAGAAGCAATGGCAGCACTGGCAATGGCAATGGCAACGGCAATGGCAGTATTAACTGGTGGGTCAATGGTGCAAGAAGCACCCGTGATTGGGCAAGTGGGGAATTCGTTCCCAAGAGTAGTGGCGCGGTGAGCAGCACACCGAGCATGCGCGGCACGGTGTGCTATGTGGCTCCTGAATACGGTGGTGGTGGTCCTTTGTCTGAGAGATGCGATATCTATAGCTACGGTGTCTTGCTACTGGTACTTATCTCAGGACGCCGGCCGTTGCAAGTGACGGCCTCACCCATGTCTGAGTTTGAGAAGGCAAGCCTCATATCGTGGGCGAAACATCTTGCGCGCGTGAGCCGCTTGATTGATCTTGTTGATCCAGCCCTACAGGATGTGAACCGTGATGAGGTTTTACTCTGCATTACAGTCGCACTCCTTTGCATCCAAAGGTCTCCAGCTCGTCGACCATCAAGTGAGGAGGTACTCCGAATGCTGTCTGGCGAGGGAGAACCTCCGCACCTCCCATTGGAGTTCTCACCGTCTCCACCTGGTGGGTTCCCTTTCAAGTCCCGAAAGAAAGTTCGGTGAGTTTGTTTAGCTCTTACCTAGATGCAAAAGGTAGCTTTAACTTTGTCCCTTAATGTATGTCTCTTTTGGTTCAAGTTCCTATTTTATGTATTCTTTTACTCACTA-CTGTATAAAGTTCCCTAGGGAAAAAGGTAATGCCGACCTGAACTCAAAATTGACAACAACATTGC] [+] EMBL AK061320 [TGTGATGGAGTGGATTAGATCAGAGATCAAGAAGGAGCGCCCCAAGAATGACTGGATTGCAGGGGCAGCTATTACCAATCCAGCTGCAGACAGGAAGAAGCCAAAGAGGAGGGCACGAGAATGGTGGCGAGAAGAATATGCTGATGAGCTTGCGAAAAAGCAGAAACGACGTGCACTTGCTAAATCAAAGAGCGAGCAGGTAGGGTTGCAATGGTGGGAGCGGGATATTGACGATGACTTGGATGCAAAGGGACGATCCAAATGGAGTATGATGAAGAGCTGGAGTCGGAGAAGCAATGGCAGCACTGGCAATGGCAATGGCAACGGCAATGGCAGTATTAACTGGTGGGTCAATGGTGCAAGAAGCACCCGTGATTGGGCAAGTGGGGAATTCGTTCCCAAGAGTAGTGGCGCGGTGAGCAGCACACCGAGCATGCGCGGCACGGTGTGCTATGTGGCTCCTGAATACGGTGGTGGTGGTCCTTTGTCTGAGAGATGCGATATCTATAGCTACGGTGTCTTGCTACTGGTACTTATCTCAGGACGCCGGCCGTTGCAAGTGACGGCCTCACCCATGTCTGAGTTTGAGAAGGCAAGCCTCATATCGTGGGCGAAACATCTTGCGCGCGTGAGCCGCTTGATTGATCTTGTTGATCCAGCCCTACAGGATGTGAACCGTGATGAGGTTTTACTCTGCATTACAGTCGCACTCCTTTGCATCCAAAGGTCTCCAGCTCGTCGACCATCAAGTGAGGAGGTACTCCGAATGCTGTCTGGCGAGGGAGAACCTCCGCACCTCCCATTGGAGTTCTCACCGTCTCCACCTGGTGGGTTCCCTTTCAAGTCCCGAAAGAAAGTTCGGTGAGTTTGTTTAGCTCTTACCTAGATGCAAAAGGTAGCTTTAACTTTGTCCCTTAATGTATGTCTCTTTTGGTTCAAGTTCCTATTTTATGTATTCTTTTACTCACTA CTGTATAAAGTTCCCTAGGGAAAAAGGTAATGCCGACCTGAACTCAA ] [+] EMBL AK065691 [ GTGGCGAGAAGAATATGCTGATGAGCTTGCGAAAAAGCAGAAACGACGTGCACTTGCTAAATCAAAGAGCGAGCAGGCAGGGTTGCAATGGTGGGAGCGGGATATTGACGATGACTTGGATGCAAAGGGACGATCCAAATGGAGTATGATGAAGAGCTGGAGTCGGAGAAGCAATGGCAGCACTGGCAATGGCAATGGCAACGGCAATGGCAGTATTAACTGGTGGGTCAATGGTGCAAGAAGCACCCGTGATTGGGCAAGTGGGGAATTCGTTCCCAAGAGTAGTGGCGCGGTGAGCAGCACACCGAGCATGCGCGGCACGGTGTGCTATGTGGCTCCTGAATACGGTGGTGGTGGTCCTTTGTCTGAGAGATGCGATATCTATAGCTACGGTGTCTTGCTACTGGTACTTATCTCAGGACGCCGGCCGTTGCAAGTGACGGCCTCACCCATGTCTGAGTTTGAGAAGGCAAGCCTCATATCGTGGGCGAAACATCTTGCGCGCGTGAGCCGCTTGATTGATCTTGTTGATCCAGCCCTACAGGATGTGAACCGTGATGAGGTTTTACTCTGCATTACAGTCGCACTCCTTTGCATCCAAAGGTCTCCAGCTCGTCGACCATCAAGTGAGGAGGTACTCCGAATGCTGTCTGGCGAGGGAGAACCTCCGCACCTCCCATTGGAGTTCTCACCGTCTCCACCTGGTGGGTTCCCTTTCAAGTCCCGAAAGAAAGTTCGGTGAGTTTGTTTAGCTCTTACCTAGATGCAAAAGGTAGCTTTAACTTTGTCCCTTAATGTATGTCTCTTTTGGTTCAAGTTCCTATTTTATGTATTCTTTTACTCACTA CTGTATAAAGTTCCCTAGGGAAAAAGGTAATGCCGACCTGAACTCAAAATTGACAACAACATTGC] [-] EMBL CB679159 [ GAGCAGGCAGGGTTGCAATGGTGGGAGCGGGATATTGACGATGACTTGGATGCAAAGGGACGATCCAAATGGAGTATGATGAAGAGCTGGAGTCGGAGAAGCAATGGCAGCACTGGCAATGGCAATGGCAACGGCAATGGCAGTATTAACTGGTGGGTCAATGGTGCAAGAAGCACCCGTGATTGGGCAAGTGGGGAATTCGTTCCCAAGAGTAGTGGCGCGGTGAGCAGCACACCGAGCATGCGCGGCACGGTGTGCTATGTGGCTCCTGAATACGGTGGTGGTGGTCCTTTGTCTGAGAGATGCGATATCTATAGCTACGGTGTCTTGCTACTGGTACTTATCTCAGGACGCCGGCCGTTGCAAGTGACGGCCTCACCCATGTCTGAGTTTGAGAAGGCAAGCCTCATATCGTGGGCGAAACATCTTGCGCGCGTGAGCCGCTTGATTGATCTTGTTGATCCAGCCCTACAGGATGTGAACCGTGATGAGGTTTTACTCTGCATTACAGTCGCACTCCTTTGCATCCAAAGGTCTCCAGCTCGTCGACCATCAAGTGAGGAGGTACTCCGAATGCTGTCTGGCGAGGGAGAACCTCCGCACCTCCCATTGGAGTTCTCACCGTCTCCACCTGGTGGGTTCCCTTTCAAGTCCCGAAAGAAAGTTCGGTGAGTTTGTTTAGCTCTTACCTAGATGCAAAAGGTAGCTTTAACTTTGTCCCTTAATGTATGTCTCTTTTGGTTCAAGTTCCTATTTTATGTATTCTTTTACTCGGTA CTGTATAAAGTTCCCTAGGGAAAAAGGTAAaaaaaagga ] [-] EMBL CB657091 [ GCACTGGCAATGGCAATGGCAACGGCAATGGCAGTATTAACTGGTGGGTCAATGGTGCAAGAAGCACCCGTGATTGGGCAAGTGGGGAATTCGTTCCCAAGAGTAGTGGCGCGGTGAGCAGCACACCGAGCATGCGCGGCACGGTGTGCTATGTGGCTCCTGAATACGGTGGTGGTGGTCCTTTGTCTGAGAGATGCGATATCTATAGCTACGGTGTCTTGCTATTGGTACTTATCTCAGAACGCCGGCCGTTGCAAGTGACGGCCTCACCCATGTGTGAGTTTGAGAAGGCAAGCCTCATATCGTGGGCGAAACATCTTGCGCGCGTGAGCCGCTTGATTGATCTTGTCGATCCAGCCCTACAGGATGTGAACCGTGATGAGGTTTTACTCTGCATTACAGTCGCACTCCTTTGCATCCAAAGGTCTCCAGATCGTCGACCATCAAGTGAGGAGGTACTCCGAATGCTGTCTGGCGAGGGAGAACCTCCGCACCTCCCATTGGAGTTCTCACCGTCTCCACCTGGTGGGTTCCCTTTCAAGTCCCGAAAGAAAGTTCGGTGAGTTTGTTTAGCTCTTACCTAGATGCAAAAGGTAGCTTTAACTTTGTCCCTTAATGTATGTCTCTTTTGGTTCAAGTTCCTATTTTATGTATTCTTTTACTCATTATCTGTA ] consensusID : consensus_7921#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 884 fasta sequence [GTGGGGGCAGCAATGGTGTAAAAGATTATGTGATGGAGTGGATTAGATCAGAGATCAAGAAGGAGCGCCCCAAGAATGACTGGATTGCAGGGGCAGCTATTACCAACCCAGCTGCAGAAAGGAAGAAGCCAAAGAGGAGGGCACGAGAATGGTGGCGAGAAGAATATGCTGATGAGCTTGCGAAAAAGCAGAAACGACGTGCACTTGCTAAATCAAGGAGCGAGCAGGCAGGGTTGCAATGGTGGGAGCGGGATATTGGCGATGACTTGGATGCAAAGGGACGATCCAAATGGAGTATGATGAAGAGCTGGAGTCGGAGAAGCAATGGCAGCACTGGCAATGGCAGTGGCAACGGCAATGGCAGTATTAACTGGTGGGTCAATGGTGCAAGAAGCACCCATGATTGGGCAAGTGGGGAATTCGTTCCCAAGAGTAGTGGCGCGGTGAGCAGCACACCGAGCATGCGCGGCACGGTGTGCTATGTGGCTCCTGAATACGGTGGTGGTGGTCCTTTGTCTGAGAGATGCGATATCTATAGCTACGGTGTCCTGCTACTGGTACTTATCTCAGGACGCCGGCCGTTGCAAGTGACGGCCTCACCCATGTCTGAGTTTGAGAAGTCGCACTCCTTTGCATCCAAAGGTCTNCAGCCCGTCGGCCATCAAGTGANGAGGTACTNCGAATGCTGTCTGGCGAGGGAGAACCTNCGCACCTTCCATTGGAGNTCTCACCGTCTNCACCTGGTGGGNTTCCTTTTCAAGTCCCGAAAGAAAGNTCGGTGAGNTTGNTTAGCTCTTACCTANATGCAAAAGGTAGCTTTAACTTTGGCCCTNANGGATGGCTCTTTTGGGTCAAGTCCTATTTTATGGATTCTTTTACTCACT] [+] EMBL CB096413 [GTGGGGGCAGCAATGGTGTAAAAGATTATGTGATGGAGTGGATTAGATCAGAGATCAAGAAGGAGCGCCCCAAGAATGACTGGATTGCAGGGGCAGCTATTACCAACCCAGCTGCAGAAAGGAAGAAGCCAAAGAGGAGGGCACGAGAATGGTGGCGAGAAGAATATGCTGATGAGCTTGCGAAAAAGCAGAAACGACGTGCACTTGCTAAATCAAGGAGCGAGCAGGCAGGGTTGCAATGGTGGGAGCGGGATATTGGCGATGACTTGGATGCAAAGGGACGATCCAAATGGAGTATGATGAAGAGCTGGAGTCGGAGAAGCAATGGCAGCACTGGCAATGGCAGTGGCAACGGCAATGGCAGTATTAACTGGTGGGTCAATGGTGCAAGAAGCACCCATGATTGGGCAAGTGGGGAATTCGTTCCCAAGAGTAGTGGCGCGGTGAGCAGCACACCGAGCATGCGCGGCACGGTGTGCTATGTGGCTCCTGAATACGGTGGTGGTGGTCCTTTGTCTGAGAGATGCGATATCTATAGCTACGGTGTCCTGCTACTGGTACTTATCTCAGGACGCCGGCCGTTGCAAGTGACGGCCTCACCCATGTCTGAGTTTGAGAAGTCGCACTCCTTTGCATCCAAAGGTCTNCAGCCCGTCGGCCATCAAGTGANGAGGTACTNCGAATGCTGTCTGGCGAGGGAGAACCTNCGCACCTTCCATTGGAGNTCTCACCGTCTNCACCTGGTGGGNTTCCTTTTCAAGTCCCGAAAGAAAGNTCGGTGAGNTTGNTTAGCTCTTACCTANATGCAAAAGGTAGCTTTAACTTTGGCCCTNANGGATGGCTCTTTTGGGTCAAGTCCTATTTTATGGATTCTTTTACTCACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7921#0 ----------------------------TGTGATGGAGTGGATTAGATCAGAGATCAAGA 32 consensus_7921#1 GTGGGGGCAGCAATGGTGTAAAAGATTATGTGATGGAGTGGATTAGATCAGAGATCAAGA 60 ******************************** consensus_7921#0 AGGAGCGCCCCAAGAATGACTGGATTGCAGGGGCAGCTATTACCAATCCAGCTGCAGACA 92 consensus_7921#1 AGGAGCGCCCCAAGAATGACTGGATTGCAGGGGCAGCTATTACCAACCCAGCTGCAGAAA 120 ********************************************** *********** * consensus_7921#0 GGAAGAAGCCAAAGAGGAGGGCACGAGAATGGTGGCGAGAAGAATATGCTGATGAGCTTG 152 consensus_7921#1 GGAAGAAGCCAAAGAGGAGGGCACGAGAATGGTGGCGAGAAGAATATGCTGATGAGCTTG 180 ************************************************************ consensus_7921#0 CGAAAAAGCAGAAACGACGTGCACTTGCTAAATCAAAGAGCGAGCAGGCAGGGTTGCAAT 212 consensus_7921#1 CGAAAAAGCAGAAACGACGTGCACTTGCTAAATCAAGGAGCGAGCAGGCAGGGTTGCAAT 240 ************************************ *********************** consensus_7921#0 GGTGGGAGCGGGATATTGACGATGACTTGGATGCAAAGGGACGATCCAAATGGAGTATGA 272 consensus_7921#1 GGTGGGAGCGGGATATTGGCGATGACTTGGATGCAAAGGGACGATCCAAATGGAGTATGA 300 ****************** ***************************************** consensus_7921#0 TGAAGAGCTGGAGTCGGAGAAGCAATGGCAGCACTGGCAATGGCAATGGCAACGGCAATG 332 consensus_7921#1 TGAAGAGCTGGAGTCGGAGAAGCAATGGCAGCACTGGCAATGGCAGTGGCAACGGCAATG 360 ********************************************* ************** consensus_7921#0 GCAGTATTAACTGGTGGGTCAATGGTGCAAGAAGCACCCGTGATTGGGCAAGTGGGGAAT 392 consensus_7921#1 GCAGTATTAACTGGTGGGTCAATGGTGCAAGAAGCACCCATGATTGGGCAAGTGGGGAAT 420 *************************************** ******************** consensus_7921#0 TCGTTCCCAAGAGTAGTGGCGCGGTGAGCAGCACACCGAGCATGCGCGGCACGGTGTGCT 452 consensus_7921#1 TCGTTCCCAAGAGTAGTGGCGCGGTGAGCAGCACACCGAGCATGCGCGGCACGGTGTGCT 480 ************************************************************ consensus_7921#0 ATGTGGCTCCTGAATACGGTGGTGGTGGTCCTTTGTCTGAGAGATGCGATATCTATAGCT 512 consensus_7921#1 ATGTGGCTCCTGAATACGGTGGTGGTGGTCCTTTGTCTGAGAGATGCGATATCTATAGCT 540 ************************************************************ consensus_7921#0 ACGGTGTCTTGCTACTGGTACTTATCTCAGGACGCCGGCCGTTGCAAGTGACGGCCTCAC 572 consensus_7921#1 ACGGTGTCCTGCTACTGGTACTTATCTCAGGACGCCGGCCGTTGCAAGTGACGGCCTCAC 600 ******** *************************************************** consensus_7921#0 CCATGTCTGAGTTTGAGAAGGCAAGCCTCATATCGTGGGCGAAACATCTTGCGCGCGTGA 632 consensus_7921#1 CCATGTCTGAGTTTGAGAAG---------------------------------------- 620 ******************** consensus_7921#0 GCCGCTTGATTGATCTTGTTGATCCAGCCCTACAGGATGTGAACCGTGATGAGGTTTTAC 692 consensus_7921#1 ------------------------------------------------------------ consensus_7921#0 TCTGCATTACAGTCGCACTCCTTTGCATCCAAAGGTCTCCAGCTCGTCGACCATCAAGTG 752 consensus_7921#1 ------------TCGCACTCCTTTGCATCCAAAGGTCTNCAGCCCGTCGGCCATCAAGTG 668 ************************** **** ***** ********** consensus_7921#0 AGGAGGTACTCCGAATGCTGTCTGGCGAGGGAGAACCTCCGCACCTCCCATTGGAGTTCT 812 consensus_7921#1 ANGAGGTACTNCGAATGCTGTCTGGCGAGGGAGAACCTNCGCACCTTCCATTGGAGNTCT 728 * ******** *************************** ******* ********* *** consensus_7921#0 CACCGTCTCCACCTGGTGGGTTCCCTTT-CAAGTCCCGAAAGAAAGTTCGGTGAGTTTGT 871 consensus_7921#1 CACCGTCTNCACCTGGTGGGNTTCCTTTTCAAGTCCCGAAAGAAAGNTCGGTGAGNTTGN 788 ******** *********** * ***** ***************** ******** *** consensus_7921#0 TTAGCTCTTACCTAGATGCAAAAGGTAGCTTTAACTTTGTCCCTTAATGTATGTCTCTTT 931 consensus_7921#1 TTAGCTCTTACCTANATGCAAAAGGTAGCTTTAACTTTGGCCCTNAN-GGATGGCTCTTT 847 ************** ************************ **** * * *** ****** consensus_7921#0 TGGTTCAAGTTCCTATTTTATGTATTCTTTTACTCACTACTGTATAAAGTTCCCTAGGGA 991 consensus_7921#1 TGGGTCAAGT-CCTATTTTATGGATTCTTTTACTCACT---------------------- 884 *** ****** *********** *************** consensus_7921#0 AAAAGGTAATGCCGACCTGAACTCAAAATTGACAACAACATTGC 1035 consensus_7921#1 -------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||