These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7924#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1165 fasta sequence [TAAATGTCCATTTTCTCGTGGGCCACCGGGCTGTGCGAACTCGCTACGTGGAATACTTGGGCCCTTCCCTTCCTTTCCCCAATCCGCCTCATCCGATAATACCCCCCACCCCTCTCTCGTTTCGGCGGCGGCGGCGCGCGGCCGGAGCCCGAGCTGAGACCACCACCACGGCACCACCACGAACACGACGATGATGGCCGCGGCAGCGAGAATGGCGTTCGCCTCATGCGGCCGCCTCCTCGCCCCCTCCTCGTCGTCATCCCTCCCCGCCCTGCCAAGAACCCGGGGCAGCGTCGCCGCAGCGGCAAGCATCCCGTCTCGTTCTTGGCGGCGGCGAGATCCGCCTCCGTCCTCTGCTACTGCTCCGACGCCACCGTCGCGCCGGCCCCGCAGGCGGCGGCCGCGGAGGGGGAAGGGGAGGAGGGGGAGAAGAAGGCGGAGGTTCCCCCCGTGGAGGAG-GTGGCGGCGCTGCTGGACATCCGGG-TGGGG-CGGGTGGTGAAGGCGTGGCGGCACCCGGAGGCGGACACGCTGTACGTGGAGGAGGTCGACGTCGGCGAGGAGCAGCCGCGCACCATCTGCAGCGGCCTCGTCAACTACCTCCCCATCGACCAGCTCCAGGACAGCAATGTGATTGTTCTTGCGAACCTCAAACCGAGGAACATGCGGGGGATAAAGTCAAACGGCATGCTTATGGCTGCATCTGATGCTTCTCATGAAAATGTCGAATTGCTTACCCCTCCTGAAGGATCTGTTCCAGGTGAAAGGGTATGGTTTGGTACTGAAGATGGAAAGGATCGCCAATCAGAAGCTGCTTCACCAAATCAGGTTCAAAAAAAGAAGATTTGGGAATCAGTTCAGCCTCATCTTAGGACATCAGAAAACTGCACAGCATTTCTTGGCGAGCACCCGATGCGTACCTCAGCGGGTGTGGTTTTCTGCAAAACTTTGCAGGGTGCAAGAGTGTCATAAGTCTCTTTCAAGAAGCTTTTTTTTTTTTCTTCTTTGGTATCCATATTGTGTACCTTACTGAAAATAATCATATGGTATGAGTAAA-AATCTTAGAGCAAGATGGTTTCTGAGGCTTTATGGAGGTCGTTCACAATTTTGTAGCTTTCTGATGTCAAAGCTGGAACATTTTACTTCAATTGGAGATTGATTTATAATT] [+] EMBL AK108051 [TAAATGTCCATTTTCTCGTGGGCCACCGGGCTGTGCGAACTCGCTACGTGGAATACTTGGGCCCTTCCCTTCCTTTCCCCAATCCGCCTCATCCGATAATACCCCCCACCCCTCTCTCGTTTCGGCGGCGGCGGCGCGCGGCCGGAGCCCGAGCTGAGACCACCACCACGGCACCACCACGAACACGACGATGATGGCCGCGGCAGCGAGAATGGCGTTCGCCTCATGCGGCCGCCTCCTCGCCCCCTCCTCGTCGTCATCCCTCCCCGCCCTGCCAAGAACCCGGGGCAGCGTCGCCGCAGCGGCAAGCATCCCGTCTCGTTCTTGGCGGCGGCGAGATCCGCCTCCGTCCTCTGCTACTGCTCCGACGCCACCGTCGCGCCGGCCCCGCAGGCGGCGGCCGCGGAGGGGGAAGGGGAGGAGGGGGAGAAGAAGGCGGAGGTTCCCCCCGTGGAGGAG GTGGCGGCGCTGCTGGACATCCGGG TGGGG CGGGTGGTGAAGGCGTGGCGGCACCCGGAGGCGGACACGCTGTACGTGGAGGAGGTCGACGTCGGCGAGGAGCAGCCGCGCACCATCTGCAGCGGCCTCGTCAACTACCTCCCCATCGACCAGCTCCAGGACAGCAATGTGATTGTTCTTGCGAACCTCAAACCGAGGAACATGCGGGGGATAAAGTCAAACGGCATGCTTATGGCTGCATCTGATGCTTCTCATGAAAATGTCGAATTGCTTACCCCTCCTGAAGGATCTGTTCCAGGTGAAAGGGTATGGTTTGGTACTGAAGATGGAAAGGATCGCCAATCAGAAGCTGCTTCACCAAATCAGGTTCAAAAAAAGAAGATTTGGGAATCAGTTCAGCCTCATCTTAGGACATCAGAAAACTGCACAGCATTTCTTGGCGAGCACCCGATGCGTACCTCAGCGGGTGTGGTTTTCTGCAAAACTTTGCAGGGTGCAAGAGTGTCATAAGTCTCTTTCAAGAAGCTTTTTTTTTTTTCTTCTTTGGTATCCATATTGTGTACCTTACTGAAAATAATCATATGGTATGAGTAAA AATCTTAGAGCAAGATGGTTTCTGAGGCTTTATGGAGGTCGTTCACAATTTTGTAGCTTTCTGATGTCAAAGCTGGAACATTTTACTTCAATTGGAGATTGATTTATAATT] [+] EMBL CB964866 [ GGAGGGGGAAGGGGAGGAGGGGGAGAAGAAGG GGAGGTTCCCCCCGTGGAGGAGTGTGGCGGCGCTGCTGGACATCCGGG TGGGG CGGGTGGTGAAGGCGTGGCGGCACCCGGAGGCGGACACGCTGTACGTGGAGGAGGTCGACGTCGGCGAGGAGCGGCCGCGCACCATCTGCAGCGGCCTCGTCAACTACCTCCCCATCGACCAGCTCCAGGACAGCAATGTGATTGTTCTTGCGAACCTCAAACCGAGGAACATGCGGGGGATAAAGTCAAACGGCATGCTTATGGCTGCATCTGATGCTTCTCATGAAAATGTCGAATTGCTTACCCCTCCTGAAGGATCTGTTCCAGGTGAAAGGGTATGGTTTGGTACTGAAGATGGAAAGGATCGCCAATCAGAAGCTGCTTCACCAAATCAGGTTCAAAAAAAGAAGATTTGGGAATCAGTTCAGCCTCATCTTAGGACATCAGAAAACTGCACAGCATTTCTTGGCGAGCACCCGATGCGTACCTCAGCGGGTGTGGTTTTCTGCAAAACTTTGCAGGGTGCAAGAGTGTCATAAGTCTCTTTCAAGAAGCTTAATATTAAT ATCTTTGGTATCCATATTGTGTACCTTACTGAAAATAATCATATGGTATGAGTAAAGAATCTT ] [-] EMBL AU163314 [ ngnGAGGAGGGGGAGAAGAAGGCGGAGGTTCCCCCCGTGGAGGAG GTGGCGGCGCTGCTGGACANCCGGG TGGGG CGGGTGGTGAAGGCGTGGCGGCACCCGGAGGCGGACACGCTGTACGTGGAGGAGGTCGACGTCGGCGAGGAGCAGCCGCGCACCATCTGCAGCGGCCTCGTCAACTACCTCCCCATCGACCAGCTCCAGGACAGCAATGTGATTGTTCTTGCGAACCTCAAACCGAGGAACATGCGGGGGATAAAGTCAAACGGCATGCTTATGGCTGCATCTGATGCTTCTCATGAAAATGTCGAATTGCTTACCCCTCCTGAAGGATCTGTTCCAGGTGAAAGGGTATGGTTTGGTACTGAAGATGGAAAGGATCGCCAATCAGAAGCTGCTTCACCAAACCAtacccc ] [-] EMBL AU163313 [ GTTCCCCCCGTGGAAGAA GTTGCCGCCCTGCTGAACATCCGGGTTGGGGCCGGTTGTTAAAGCCTTGGCGGCACCCGGAGGCGGACACGCTGTACGTGGAGGAGGTCGACGTCGGCGAGGAGCAGCCGCGCACCATCTGCAGCGGCCTCGTCAACTACCTCCCCATCGACCAGCTCCAGGACAGCAATGTGATTGTTCTTGCGAACCTCAAACCGAGGAACATGCGGGGGATAAAGTCAAACGGCATGCTTATGGCTGCATCTGATGCTTCTCATGAAAATGTCGAATTGCTTACCCCTCCTGAAGGATCTGTTCCAGGTGAAAGGGTATGGTTTGGTACTGAAGATGGAAAGGATCGCCAATCAGAAGCTGCTTC ] consensusID : consensus_7924#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 330 fasta sequence [NTGGCGGCAACCCGGAAGCGGGACACGCTGTACGTGGAGGAGGTCGACGTCGGCGAGGAGCAGCCGCGCACCATCTGCAGCGGCCTCGTCAACTACCTCCCCATCGACCAGCTCCAGGACAGCAATGTGATTGTTCTTGCGAACCTCAAACCGAGGAACATGCGGGGGATAAANTCAAACGGCATGCTTATGGCTGCATNTGATGCTTCTCATGAAAATGTCGAATTGCTTACCCCTCCTGAAGGATCTGTTCCAGGTGAAAGGGTATGGTTTGGTACTGAAGATGGAAAGGATCGCCAATNAGAAGCTGCTTCACCAAANCCATTCATN] [-] EMBL C28689 [NTGGCGGCAACCCGGAAGCGGGACACGCTGTACGTGGAGGAGGTCGACGTCGGCGAGGAGCAGCCGCGCACCATCTGCAGCGGCCTCGTCAACTACCTCCCCATCGACCAGCTCCAGGACAGCAATGTGATTGTTCTTGCGAACCTCAAACCGAGGAACATGCGGGGGATAAANTCAAACGGCATGCTTATGGCTGCATNTGATGCTTCTCATGAAAATGTCGAATTGCTTACCCCTCCTGAAGGATCTGTTCCAGGTGAAAGGGTATGGTTTGGTACTGAAGATGGAAAGGATCGCCAATNAGAAGCTGCTTCACCAAANCCATTCATN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7924#0 TAAATGTCCATTTTCTCGTGGGCCACCGGGCTGTGCGAACTCGCTACGTGGAATACTTGG 60 consensus_7924#1 ------------------------------------------------------------ consensus_7924#0 GCCCTTCCCTTCCTTTCCCCAATCCGCCTCATCCGATAATACCCCCCACCCCTCTCTCGT 120 consensus_7924#1 ------------------------------------------------------------ consensus_7924#0 TTCGGCGGCGGCGGCGCGCGGCCGGAGCCCGAGCTGAGACCACCACCACGGCACCACCAC 180 consensus_7924#1 ------------------------------------------------------------ consensus_7924#0 GAACACGACGATGATGGCCGCGGCAGCGAGAATGGCGTTCGCCTCATGCGGCCGCCTCCT 240 consensus_7924#1 ------------------------------------------------------------ consensus_7924#0 CGCCCCCTCCTCGTCGTCATCCCTCCCCGCCCTGCCAAGAACCCGGGGCAGCGTCGCCGC 300 consensus_7924#1 ------------------------------------------------------------ consensus_7924#0 AGCGGCAAGCATCCCGTCTCGTTCTTGGCGGCGGCGAGATCCGCCTCCGTCCTCTGCTAC 360 consensus_7924#1 ------------------------------------------------------------ consensus_7924#0 TGCTCCGACGCCACCGTCGCGCCGGCCCCGCAGGCGGCGGCCGCGGAGGGGGAAGGGGAG 420 consensus_7924#1 ------------------------------------------------------------ consensus_7924#0 GAGGGGGAGAAGAAGGCGGAGGTTCCCCCCGTGGAGGAGGTGGCGGCGCTGCTGGACATC 480 consensus_7924#1 ------------------------------------------------------------ consensus_7924#0 CGGGTGGGGCGGGTGGTGAAGGCGTGGCGGCA-CCCGGAGGCGG-ACACGCTGTACGTGG 538 consensus_7924#1 -----------------------NTGGCGGCAACCCGGAAGCGGGACACGCTGTACGTGG 37 ******** ****** **** *************** consensus_7924#0 AGGAGGTCGACGTCGGCGAGGAGCAGCCGCGCACCATCTGCAGCGGCCTCGTCAACTACC 598 consensus_7924#1 AGGAGGTCGACGTCGGCGAGGAGCAGCCGCGCACCATCTGCAGCGGCCTCGTCAACTACC 97 ************************************************************ consensus_7924#0 TCCCCATCGACCAGCTCCAGGACAGCAATGTGATTGTTCTTGCGAACCTCAAACCGAGGA 658 consensus_7924#1 TCCCCATCGACCAGCTCCAGGACAGCAATGTGATTGTTCTTGCGAACCTCAAACCGAGGA 157 ************************************************************ consensus_7924#0 ACATGCGGGGGATAAAGTCAAACGGCATGCTTATGGCTGCATCTGATGCTTCTCATGAAA 718 consensus_7924#1 ACATGCGGGGGATAAANTCAAACGGCATGCTTATGGCTGCATNTGATGCTTCTCATGAAA 217 **************** ************************* ***************** consensus_7924#0 ATGTCGAATTGCTTACCCCTCCTGAAGGATCTGTTCCAGGTGAAAGGGTATGGTTTGGTA 778 consensus_7924#1 ATGTCGAATTGCTTACCCCTCCTGAAGGATCTGTTCCAGGTGAAAGGGTATGGTTTGGTA 277 ************************************************************ consensus_7924#0 CTGAAGATGGAAAGGATCGCCAATCAGAAGCTGCTTCACCAAATCAGGTTCAAAAAAAGA 838 consensus_7924#1 CTGAAGATGGAAAGGATCGCCAATNAGAAGCTGCTTCACCAAANCCA-TTCATN------ 330 ************************ ****************** * **** consensus_7924#0 AGATTTGGGAATCAGTTCAGCCTCATCTTAGGACATCAGAAAACTGCACAGCATTTCTTG 898 consensus_7924#1 ------------------------------------------------------------ consensus_7924#0 GCGAGCACCCGATGCGTACCTCAGCGGGTGTGGTTTTCTGCAAAACTTTGCAGGGTGCAA 958 consensus_7924#1 ------------------------------------------------------------ consensus_7924#0 GAGTGTCATAAGTCTCTTTCAAGAAGCTTTTTTTTTTTTCTTCTTTGGTATCCATATTGT 1018 consensus_7924#1 ------------------------------------------------------------ consensus_7924#0 GTACCTTACTGAAAATAATCATATGGTATGAGTAAAAATCTTAGAGCAAGATGGTTTCTG 1078 consensus_7924#1 ------------------------------------------------------------ consensus_7924#0 AGGCTTTATGGAGGTCGTTCACAATTTTGTAGCTTTCTGATGTCAAAGCTGGAACATTTT 1138 consensus_7924#1 ------------------------------------------------------------ consensus_7924#0 ACTTCAATTGGAGATTGATTTATAATT 1165 consensus_7924#1 --------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||