These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7931#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1172 fasta sequence [CCCTGTAGCATGAACCAGCTGGCGCTCACTCCCACCCCCAAGCGGCAGAAGGTGGAGGAGAGCGCGGATGGGAACGGGTGCAAGCATTGCGCCTGCAAGAAGTCGAGATGCTTGAAGCTCTATTGCCCATGCTTTGCTGGTGGAGGTTATTGTTCTGAAAAGTGTGGATGCCAACCATGCTTCAACAAGGCCTTATATGCAGAAACAGTTCAGACCACTCGCAAGGTGCTTCTTTCACGGCAGAAACGGATGTCACTGAAAATTAATCGAAGATCTGAGGCAAATGCGGAAGCTGTGGAAGATGCTCATCATTCTTCTTCTTCAACTCCGCCTAGGCGAGGTTGCAATTGCAAGAAATCAAGTTGCCTAAAGAAATACTGTGATTGCTACCAGGATGGGACTGGTTGCTCTTTGTTTTGCCGATGTGAGGACTGCAGGAATCCTTTCGGGAAAAATGAAGGCATAATGGCAGAAGAAAGTAAGCGCTTTTTATACACTGGCGCAGACCTGGACCACAGTGAGGATGAACAAGACTTTATCGTGGAACGTTCACCTCGCCTGCAGTCACCAATCTCAAAAGAGTCCTCCTTCCAGCAAACTCCCCCGCATATCAGAGCCACGAACAGAGATACACACATGTTCCCGCAGGCGATATCGCAGTGGCAGCCCCGCTCATGGCATTGCTCCAAGAGGCAGAGCAACGACCGGGTGATCGACGACTCAGGGGAGTACAAGAACTCGAATCACGACTGGCAGTTGGCCAAGCCAGAGGACAGCTACAGCATATCGAGATGCGTCCAGATCCTCAACGGCATGGCCGAGCTATCTCAGGTGGAGAAATCGGTTGCCCCCGATGTGTTCCTCCAGGCGGGGAACCGGGAAATATTCATCTCGCTTAACGGTGACGTCCGGGCCCTGTGGCTGAAACGCAAGATCCAGAACCTGACTTAGGGCATGCCATTTGTCACCTTAGTGTTGTTTTGGAGGCTGAGATTGGAGACACCATTGGATCATCAATCCATTTAGGCTATGCATGTCCTGCTGGTCGGTTGAAAATGTGCAGGATCTTAGGCTCTTCTTGTATACTGAGTTGTATCCCAAATTTCCGTCATCTTTTCTTTGTAGAGAGCTAGCAGCAGATGCGAACTTTGGTAACCGGTTATAATAATAAA] [+] EMBL AK108053 [CCCTGTAGCATGAACCAGCTGGCGCTCACTCCCACCCCCAAGCGGCAGAAGGTGGAGGAGAGCGCGGATGGGAACGGGTGCAAGCATTGCGCCTGCAAGAAGTCGAGATGCTTGAAGCTCTATTGCCCATGCTTTGCTGGTGGAGGTTATTGTTCTGAAAAGTGTGGATGCCAACCATGCTTCAACAAGGCCTTATATGCAGAAACAGTTCAGACCACTCGCAAGGTGCTTCTTTCACGGCAGAAACGGATGTCACTGAAAATTAATCGAAGATCTGAGGCAAATGCGGAAGCTGTGGAAGATGCTCATCATTCTTCTTCTTCAACTCCGCCTAGGCGAGGTTGCAATTGCAAGAAATCAAGTTGCCTAAAGAAATACTGTGATTGCTACCAGGATGGGACTGGTTGCTCTTTGTTTTGCCGATGTGAGGACTGCAGGAATCCTTTCGGGAAAAATGAAGGCATAATGGCAGAAGAAAGTAAGCGCTTTTTATACACTGGCGCAGACCTGGACCACAGTGAGGATGAACAAGACTTTATCGTGGAACGTTCACCTCGCCTGCAGTCACCAATCTCAAAAGAGTCCTCCTTCCAGCAAACTCCCCCGCATATCAGAGCCACGAACAGAGATACACACATGTTCCCGCAGGCGATATCGCAGTGGCAGCCCCGCTCATGGCATTGCTCCAAGAGGCAGAGCAACGACCGGGTGATCGACGACTCAGGGGAGTACAAGAACTCGAATCACGACTGGCAGTTGGCCAAGCCAGAGGACAGCTACAGCATATCGAGATGCGTCCAGATCCTCAACGGCATGGCCGAGCTATCTCAGGTGGAGAAATCGGTTGCCCCCGATGTGTTCCTCCAGGCGGGGAACCGGGAAATATTCATCTCGCTTAACGGTGACGTCCGGGCCCTGTGGCTGAAACGCAAGATCCAGAACCTGACTTAGGGCATGCCATTTGTCACCTTAGTGTTGTTTTGGAGGCTGAGATTGGAGACACCATTGGATCATCAATCCATTTAGGCTATGCATGTCCTGCTGGTCGGTTGAAAATGTGCAGGATCTTAGGCTCTTCTTGTATACTGAGTTGTATCCCAAATTTCCGTCATCTTTTCTTTGTAGAGAGCTAGCAGCAGATGCGAACTTTGGTAACCGGTTATAATAATAAA] [+] EMBL D43474 [ TTCTTCTTCAACTCCGCCTAGGCGAGGTTGCAATTGCAAGAAATCAAGTTGCCTAAAGAAATACTGTGATTGCTACCAGGGTGGGACTGGTTGCTCTTTGNTTTGCCGNTGTGAGGACTGCAGGNATCCTTTCGGGGAAAATGAAGGCA ] [+] EMBL CA998386 [ ACGAACAGAGATACACACATGTTCCCGCAGGCGATATCGCAGTGGCAGCCCCGCTCATGGCATTGCTCCAAGAGGCAGAGCAACGACCGGGTGATCGACGACTCAGGGGAGTACAAGAACTCGAATCACGACTGGCAGTTGGCCAAGCCAGAGGACAGCTACACCATATCGAGATGCGTCCAGATCCTCAACGGCATGGCCGAGCTATCTCAGGTGGAGAAATCGGTTGCCCCCGATGTGTTCCTCCAGGCGGGGAACCGGGAAATATTCATCTCGCTTAACGGTGACGTCCGGGCCCTGTGGCTGAAACGCAAGATCCAGAACCTGACTTAGGGCATGCCATTTGTCACCTTAGTGTTGTTTTGGAGGCTGAGATTGGAGACACCATTGGATCATCAATCCATTTAGGCTATGCATGTCCTGCTGGTCGGTTGAAAATGTGCAGGATCTTAGGCTCTTCTTGTATACTGAGTTGTATCCCAAATTTCCGTCATCTTTTCTTTGTAGAGAGCTAGCAGCAGATGCGAACTTTGGTAACCGGCTATAATAATAA ] [+] EMBL CA999380 [ AGATACACACATGTTCCCGCAGGCGATATCGCAGTGGCAGCCCCGCTCATGGCATTGCTCCAAGAGGCAGAGCAACGACCGGGTGATCGACGACTCAGGGGAGTACAAGAACTCGAATCACGACTGGCAGTTGGCCAAGCCAGAGGACAGCTACAGCATATCGAGATGCGTCCAGATCCTCAACGGCATGGCCGAGCTATCTCAGGTGGAGAAATCGGTTGCCCCCGATGTGTTCCTCCAGGCGGGGAACCGGGAAATATTCATCTCGCTTAACGGTGACGTCCG ] consensusID : consensus_7931#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 680 fasta sequence [GGCGCAGACTGGGGCCCCAGTGAGGATGACCAAGACTTTATCGTGGAACGTTCACCTTGCCTGCAGTCACCAATCTCAAAAGAGTCCTCCTTCCAGCAAACTCCCCCGCAGTATTAGAGCCACGAACAGAGATACACACATGTTCCCGCAGGCGATATCGCAGTGGCAGCCCCGCTCATGGCATTGCTCCAAGAGGCAGAGCAACGATCGGGTGATCGACGACTCAGGGGAGTACAAGAACTCGAATCACGACTGGCAGTTGGCCAAGCCAGAGGACAGCTACAGCATATCGAGATGCGTCCAGATCCTCAACGGCATGGCCGAGCTATCTCAGGTGGAGAAATCGGTTGCCCCCCATGTGTTCCTCCCGGCGGGGAACCGGGAAATATTCATCTCGCTTAACGGTGACGTCCGGGCCCTGTGGCTGAAACGCAAGATCCAGAACCTGACTTAGGGCATGCCATCTGTCCCCTTAGTGTTGTTTTGGAGGCTGAGATTGGAGACCCCATTGGATCATCAATCCATTTGGGCTATGCATGTCCTGCTGGTCGGTTGAAAATGTGCAGGATCTTAGGCTCTTCTTGTATACTGAGTTGTATCCCAAATTTCCGTCATCTTTTCTTTGTAGAGAGCTAGCAGCAGATGCGAACTTTGGTAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CA762746 [GGCGCAGACTGGGGCCCCAGTGAGGATGACCAAGACTTTATCGTGGAACGTTCACCTTGCCTGCAGTCACCAATCTCAAAAGAGTCCTCCTTCCAGCAAACTCCCCCGCAGTATTAGAGCCACGAACAGAGATACACACATGTTCCCGCAGGCGATATCGCAGTGGCAGCCCCGCTCATGGCATTGCTCCAAGAGGCAGAGCAACGATCGGGTGATCGACGACTCAGGGGAGTACAAGAACTCGAATCACGACTGGCAGTTGGCCAAGCCAGAGGACAGCTACAGCATATCGAGATGCGTCCAGATCCTCAACGGCATGGCCGAGCTATCTCAGGTGGAGAAATCGGTTGCCCCCCATGTGTTCCTCCCGGCGGGGAACCGGGAAATATTCATCTCGCTTAACGGTGACGTCCGGGCCCTGTGGCTGAAACGCAAGATCCAGAACCTGACTTAGGGCATGCCATCTGTCCCCTTAGTGTTGTTTTGGAGGCTGAGATTGGAGACCCCATTGGATCATCAATCCATTTGGGCTATGCATGTCCTGCTGGTCGGTTGAAAATGTGCAGGATCTTAGGCTCTTCTTGTATACTGAGTTGTATCCCAAATTTCCGTCATCTTTTCTTTGTAGAGAGCTAGCAGCAGATGCGAACTTTGGTAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7931#0 CCCTGTAGCATGAACCAGCTGGCGCTCACTCCCACCCCCAAGCGGCAGAAGGTGGAGGAG 60 consensus_7931#1 ------------------------------------------------------------ consensus_7931#0 AGCGCGGATGGGAACGGGTGCAAGCATTGCGCCTGCAAGAAGTCGAGATGCTTGAAGCTC 120 consensus_7931#1 ------------------------------------------------------------ consensus_7931#0 TATTGCCCATGCTTTGCTGGTGGAGGTTATTGTTCTGAAAAGTGTGGATGCCAACCATGC 180 consensus_7931#1 ------------------------------------------------------------ consensus_7931#0 TTCAACAAGGCCTTATATGCAGAAACAGTTCAGACCACTCGCAAGGTGCTTCTTTCACGG 240 consensus_7931#1 ------------------------------------------------------------ consensus_7931#0 CAGAAACGGATGTCACTGAAAATTAATCGAAGATCTGAGGCAAATGCGGAAGCTGTGGAA 300 consensus_7931#1 ------------------------------------------------------------ consensus_7931#0 GATGCTCATCATTCTTCTTCTTCAACTCCGCCTAGGCGAGGTTGCAATTGCAAGAAATCA 360 consensus_7931#1 ------------------------------------------------------------ consensus_7931#0 AGTTGCCTAAAGAAATACTGTGATTGCTACCAGGATGGGACTGGTTGCTCTTTGTTTTGC 420 consensus_7931#1 ------------------------------------------------------------ consensus_7931#0 CGATGTGAGGACTGCAGGAATCCTTTCGGGAAAAATGAAGGCATAATGGCAGAAGAAAGT 480 consensus_7931#1 ------------------------------------------------------------ consensus_7931#0 AAGCGCTTTTTATACACTGGCGCAGACCTGGACCACAGTGAGGATGAACAAGACTTTATC 540 consensus_7931#1 ------------------GGCGCAGACTGGGGCCCCAGTGAGGATGACCAAGACTTTATC 42 ********* ** ** ************ ************ consensus_7931#0 GTGGAACGTTCACCTCGCCTGCAGTCACCAATCTCAAAAGAGTCCTCCTTCCAGCAAACT 600 consensus_7931#1 GTGGAACGTTCACCTTGCCTGCAGTCACCAATCTCAAAAGAGTCCTCCTTCCAGCAAACT 102 *************** ******************************************** consensus_7931#0 CCCCCGCA-TATCAGAGCCACGAACAGAGATACACACATGTTCCCGCAGGCGATATCGCA 659 consensus_7931#1 CCCCCGCAGTATTAGAGCCACGAACAGAGATACACACATGTTCCCGCAGGCGATATCGCA 162 ******** *** *********************************************** consensus_7931#0 GTGGCAGCCCCGCTCATGGCATTGCTCCAAGAGGCAGAGCAACGACCGGGTGATCGACGA 719 consensus_7931#1 GTGGCAGCCCCGCTCATGGCATTGCTCCAAGAGGCAGAGCAACGATCGGGTGATCGACGA 222 ********************************************* ************** consensus_7931#0 CTCAGGGGAGTACAAGAACTCGAATCACGACTGGCAGTTGGCCAAGCCAGAGGACAGCTA 779 consensus_7931#1 CTCAGGGGAGTACAAGAACTCGAATCACGACTGGCAGTTGGCCAAGCCAGAGGACAGCTA 282 ************************************************************ consensus_7931#0 CAGCATATCGAGATGCGTCCAGATCCTCAACGGCATGGCCGAGCTATCTCAGGTGGAGAA 839 consensus_7931#1 CAGCATATCGAGATGCGTCCAGATCCTCAACGGCATGGCCGAGCTATCTCAGGTGGAGAA 342 ************************************************************ consensus_7931#0 ATCGGTTGCCCCCGATGTGTTCCTCCAGGCGGGGAACCGGGAAATATTCATCTCGCTTAA 899 consensus_7931#1 ATCGGTTGCCCCCCATGTGTTCCTCCCGGCGGGGAACCGGGAAATATTCATCTCGCTTAA 402 ************* ************ ********************************* consensus_7931#0 CGGTGACGTCCGGGCCCTGTGGCTGAAACGCAAGATCCAGAACCTGACTTAGGGCATGCC 959 consensus_7931#1 CGGTGACGTCCGGGCCCTGTGGCTGAAACGCAAGATCCAGAACCTGACTTAGGGCATGCC 462 ************************************************************ consensus_7931#0 ATTTGTCACCTTAGTGTTGTTTTGGAGGCTGAGATTGGAGACACCATTGGATCATCAATC 1019 consensus_7931#1 ATCTGTCCCCTTAGTGTTGTTTTGGAGGCTGAGATTGGAGACCCCATTGGATCATCAATC 522 ** **** ********************************** ***************** consensus_7931#0 CATTTAGGCTATGCATGTCCTGCTGGTCGGTTGAAAATGTGCAGGATCTTAGGCTCTTCT 1079 consensus_7931#1 CATTTGGGCTATGCATGTCCTGCTGGTCGGTTGAAAATGTGCAGGATCTTAGGCTCTTCT 582 ***** ****************************************************** consensus_7931#0 TGTATACTGAGTTGTATCCCAAATTTCCGTCATCTTTTCTTTGTAGAGAGCTAGCAGCAG 1139 consensus_7931#1 TGTATACTGAGTTGTATCCCAAATTTCCGTCATCTTTTCTTTGTAGAGAGCTAGCAGCAG 642 ************************************************************ consensus_7931#0 ATGCGAACTTTGGTAACCGGTTATAATAATAAA----- 1172 consensus_7931#1 ATGCGAACTTTGGTAAAAAAAAAAAAAAAAAAAAAAAA 680 **************** * ** ** *** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||