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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7938#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1529 fasta sequence
[TTGAGGGCTTGAAGCGCTCGGAGTGAAGGGAGAAGAAGAGCGGCGGCGGCGATGGAGGGGTGGGACAAGGGGACGAAGAGCGTGGTGGGCGAGATCCCGCTGCTGTCGACGCGGGCGGGGCCCCGGGACGGCGAGGCGTGGCGGCAGCGTCTCAAGGAGGAGTACCGCGCGCTGATCGCCTACACGTCGGTGAACAAGTCCAAGGACAACGACTGGTTCCGCATCTCCGCCGCCAACCCCGAGGGCACCCGCTGGGAGGGCACCTGCTGGTACGTCCACAACCTCCGCCGCTACGAGTTCCCCCTCCAGTCCGACATCCCCGTCGCCTACCCCCAGGTCGCCCCCGAGATCGAGCTCCCCACCCTCGATGGCAAGACCCACAAGATGTACCGTGGCGGGAAGATCTGCCTCACCGTGCACTTCAAGCCGCTGTGGGCGAAGAACTGCCCAAGGTTCGGGATCGCGCACGCGCTGTGCCTCGGCCTGGCGCCGTGGCTGGCGGCGGAGGTGCCGATTCTAGTCGATTCGGGCATGGTTAAGCACAAGGACGATGAGGCGGCTCCGGCCGATGCAGCGGCTGCTGCGTCTGGATCTGCCGCTGCTTCGTAATTATGCTCCTCCATTATGTTCAGTGGGCTTCATAGAGTTTCTGTATCAGCAGAATCAAACTCCTTATGCATAATCATAGGTATGTTCTTTTTTATTTAGGATGAAACATGTTTCCTATTGATGGTTAACTAAGAATATTGTAAACTACTATAGGTTTCTGACATAACCATAAGAAACTGAAGTTCCATTTGTCTTTTTTTTTCTCCGAGTTCTGACAAGTTACAACTACAATAATCTGACCACACTTTTCTTTTGAAGTCTTTTTTTGTCCGACTAGTACCAAAACCGATGAAGCAAAACAGTGCCATGTCTTACTCTGTTGCATCACCTAATATAGTTTATAGCCTCTTAAATATCCACTATCCTAGACATGCTTAGAATACTACGAATCAACTAAAGCTGAGTAAAGGACTCAAACTTGCATCTTCAGGGCAGGTATCATCTGGTTGTATAGACAAGTCAGCTGGGAGTTTTTCTCTTTTTTCTTTTTTGATCTTTTTTTTGGTTTCCACGTACCATTGTGGCACTTCATGTTGACATTTCTATTTAATGCCCTTAAGTTTTAACATTTTCTCTTGAAATAATTTCTCCCAAGGATAAGCCAGAACAATTTATTTTAGTAGTTTGAGATATGATTTCAGAATTCAGATGCCTCTTCCTTTAAGTTCTGGAGGCTTCATAGAGTTTATGTTTAACAGCACAACCGAATTCCTTATTAATCTCATTCTCCTTTGAATTGGTCTTTACCTTGCTTGCTGCAACATGTTTGTCATCGAAGAAGATATACAAGCTATGATTTCAGTGTTGGTACCTTTTTTTCTCAATGTATTTCAATTTTTAACAGTCAAGTAAGTTGCAACAAATCAAGAAGACAATTAGCTGTTTTGTGAGCAACCACCAATTTCACAATTTTGCATTTC]
[+] EMBL AK108741 [TTGAGGGCTTGAAGCGCTCGGAGTGAAGGGAGAAGAAGAGCGGCGGCGGCGATGGAGGGGTGGGACAAGGGGACGAAGAGCGTGGTGGGCGAGATCCCGCTGCTGTCGACGCGGGCGGGGCCCCGGGACGGCGAGGCGTGGCGGCAGCGTCTCAAGGAGGAGTACCGCGCGCTGATCGCCTACACGTCGGTGAACAAGTCCAAGGACAACGACTGGTTCCGCATCTCCGCCGCCAACCCCGAGGGCACCCGCTGGGAGGGCACCTGCTGGTACGTCCACAACCTCCGCCGCTACGAGTTCCCCCTCCAGTCCGACATCCCCGTCGCCTACCCCCAGGTCGCCCCCGAGATCGAGCTCCCCACCCTCGATGGCAAGACCCACAAGATGTACCGTGGCGGGAAGATCTGCCTCACCGTGCACTTCAAGCCGCTGTGGGCGAAGAACTGCCCAAGGTTCGGGATCGCGCACGCGCTGTGCCTCGGCCTGGCGCCGTGGCTGGCGGCGGAGGTGCCGATTCTAGTCGATTCGGGCATGGTTAAGCACAAGGACGATGAGGCGGCTCCGGCCGATGCAGCGGCTGCTGCGTCTGGATCTGCCGCTGCTTCGTAATTATGCTCCTCCATTATGTTCAGTGGGCTTCATAGAGTTTCTGTATCAGCAGAATCAAACTCCTTATGCATAATCATAGGTATGTTCTTTTTTATTTAGGATGAAACATGTTTCCTATTGATGGTTAACTAAGAATATTGTAAACTACTATAGGTTTCTGACATAACCATAAGAAACTGAAGTTCCATTTGTCTTTTTTTTTCTCCGAGTTCTGACAAGTTACAACTACAATAATCTGACCACACTTTTCTTTTGAAGTCTTTTTTTGTCCGACTAGTACCAAAACCGATGAAGCAAAACAGTGCCATGTCTTACTCTGTTGCATCACCTAATATAGTTTATAGCCTCTTAAATATCCACTATCCTAGACATGCTTAGAATACTACGAATCAACTAAAGCTGAGTAAAGGACTCAAACTTGCATCTTCAGGGCAGGTATCATCTGGTTGTATAGACAAGTCAGCTGGGAGTTTTTCTCTTTTTTCTTTTTTGATCTTTTTTTTGGTTTCCACGTACCATTGTGGCACTTCATGTTGACATTTCTATTTAATGCCCTTAAGTTTTAACATTTTCTCTTGAAATAATTTCTCCCAAGGATAAGCCAGAACAATTTATTTTAGTAGTTTGAGATATGATTTCAGAATTCAGATGCCTCTTCCTTTAAGTTCTGGAGGCTTCATAGAGTTTATGTTTAACAGCACAACCGAATTCCTTATTAATCTCATTCTCCTTTGAATTGGTCTTTACCTTGCTTGCTGCAACATGTTTGTCATCGAAGAAGATATACAAGCTATGATTTCAGTGTTGGTACCTTTTTTTCTCAATGTATTTCAATTTTTAACAGTCAAGTAAGTTGCAACAAATCAAGAAGACAATTAGCTGTTTTGTGAGCAACCACCAATTTCACAATTTTGCATTTC]
consensusID : consensus_7938#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 748 fasta sequence
[TCCACACGAGAATACATACCAGAGTTGAGGGCTTGAAGCGCTCGGAGTGAAGGGAGAAGAAGAGCGGCGGCGGCGATGGAGGGGTGGGACAAGGGGACGAAGAGCGTGGTGGGCGAGATCCCGCTGCTGTCGACGCGGGCGGGGCCCCGGGACGGCGAGGCGTGGCGGCAGCGTCTCAAGGAGGAGTACCGCGCGCTGATCGCCTACACGTCGGTGAACAAGTCCAAGGACAACGACTGGTTCCGCATCTCCGCCGCCAACCCCGAGGGCACCCGCTGGGAGGGCACCTGCTGGTACGTCCACAACCTCCGCCGCTACGAGTTCCCCCTCCAGTTCGACATCCCCGTCGCCTACCCCCAGGTCGCCCCCGAGATCGAGCTCCCCACCCTCGATGGCAAGACCCACAAGATGTACCGTGGCGGGAAGATCTGCCTCACCGTGCACTTCAAGCCGCTGTGGGCGAAGAACTGCCCAAGGTTCGGGATCGCGCACGCGCTGTGCCTCGGCCTGGCGCCGTGGCTGGCGGCGGAGGTGCCGATTCTAGTCGATTCGGGCATGGTTAAGCACAAGGACGATGAGGCGGCTCCGGCCGATGCAGCGGCTGCTGCGTCTGGATCTGCCGCTGCTTCGTAATTGTAAGTCTGTGTCATGTGGCTGTATCAGGGTTGGAAATCCACCCAGTTGTGAACTAATAAGAATAACACCTATACAATGTTGATGCGCTGATTTCTGGTTGAAGATACAGTTA]
[+] EMBL AK059551 [TCCACACGAGAATACATACCAGAGTTGAGGGCTTGAAGCGCTCGGAGTGAAGGGAGAAGAAGAGCGGCGGCGGCGATGGAGGGGTGGGACAAGGGGACGAAGAGCGTGGTGGGCGAGATCCCGCTGCTGTCGACGCGGGCGGGGCCCCGGGACGGCGAGGCGTGGCGGCAGCGTCTCAAGGAGGAGTACCGCGCGCTGATCGCCTACACGTCGGTGAACAAGTCCAAGGACAACGACTGGTTCCGCATCTCCGCCGCCAACCCCGAGGGCACCCGCTGGGAGGGCACCTGCTGGTACGTCCACAACCTCCGCCGCTACGAGTTCCCCCTCCAGTTCGACATCCCCGTCGCCTACCCCCAGGTCGCCCCCGAGATCGAGCTCCCCACCCTCGATGGCAAGACCCACAAGATGTACCGTGGCGGGAAGATCTGCCTCACCGTGCACTTCAAGCCGCTGTGGGCGAAGAACTGCCCAAGGTTCGGGATCGCGCACGCGCTGTGCCTCGGCCTGGCGCCGTGGCTGGCGGCGGAGGTGCCGATTCTAGTCGATTCGGGCATGGTTAAGCACAAGGACGATGAGGCGGCTCCGGCCGATGCAGCGGCTGCTGCGTCTGGATCTGCCGCTGCTTCGTAATTGTAAGTCTGTGTCATGTGGCTGTATCAGGGTTGGAAATCCACCCAGTTGTGAACTAATAAGAATAACACCTATACAATGTTGATGCGCTGATTTCTGGTTGAAGATACAGTTA]
[+] EMBL AU163488 [ AGCGGCGGCGGCGATGGAGGGGTGGGACAAGGGGACGAAGAGCGTGGTGGGCGAGATCCCGCTGCTGTCGACGCGGGCGGGGCCCCGGGACGGCGAGGCGTGGCGGCA CGTCTCAAGGAGGAGTACCGCGCGCTGATCGCCTACACGTCGGTGAACAAGTCCAAGGACAACGACTGGTTCCGCATCTCCGCCGCCAACCCCGAGGGCACCCGCTGGGAGGGCACCTGCTGGTACGTCCACAACCTCCGCCGCTACGAGTTCCCCCTCCAGTTCGACATCCCCGTCGCCTACCCCCAGGTCGCCCCCGAGATCGAGCTCCCCACCCTCGATGGCAAGACCCACAAGATGTACCGTGGCGGGAAGATCTGCCTCACCGTGCACTTCAAGCCGCTGTGGGCGAAGAACTGCCCAAGGTTCGGG ]
[+] EMBL CA763835 [ CGATGCAGCGGCTGCTGCGTCTGGATCTGTCGCTGCTTCGTAATTGTAAGTCTGTGTCATGTGGCTGTATCAGGGTTGGAAATCCACCCAGTTGTGAACTAATAAGAATAACACCTATACAATGTTGATGCGCTGA ]
consensusID : consensus_7938#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 337 fasta sequence
[ATCGCCACCAAATCAGATCCAATTTCCCATAAAAAAAATCAGATCCAATTCCACACGAGAATACATACCAGAGTTGAGGGCTTGAAGCGCTCGGAGTGAAGGGAGAAGAAGAGCGGCGGCGGCGATGGAGGTGCCGATTCTAGTCGATTCGGGCATGGTTAAGCACAAGGACGATGAGGCGGCTCCGGCCGATGCAGCGGCTGCTGCGTCTGAATCTGCCGCTGCTTCGTAATTGTAAGTCTGTGTCATGTGGCTGTATCAGGGTTGGAAATCCACCCAGTTGTGAACTAATAAGAATAACACCTATACAATGTTGATGCGCTGATTTCTGGTTGAA]
[+] EMBL CA764492 [ATCGCCACCAAATCAGATCCAATTTCCCATAAAAAAAATCAGATCCAATTCCACACGAGAATACATACCAGAGTTGAGGGCTTGAAGCGCTCGGAGTGAAGGGAGAAGAAGAGCGGCGGCGGCGATGGAGGTGCCGATTCTAGTCGATTCGGGCATGGTTAAGCACAAGGACGATGAGGCGGCTCCGGCCGATGCAGCGGCTGCTGCGTCTGAATCTGCCGCTGCTTCGTAATTGTAAGTCTGTGTCATGTGGCTGTATCAGGGTTGGAAATCCACCCAGTTGTGAACTAATAAGAATAACACCTATACAATGTTGATGCGCTGATTTCTGGTTGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7938#0 ------------------------TTGAGGGCTTGAAGCGCTCGGAGTGAAGGGAGAAGA 36
consensus_7938#1 TCCACACGAGAATACATACCAGAGTTGAGGGCTTGAAGCGCTCGGAGTGAAGGGAGAAGA 60
consensus_7938#2 ------------------------------------------------------------
consensus_7938#0 AGAGCGGCGGCGGCGATGGAGGGGTGGGACAAGGGGACGAAGAGCGTGGTGGGCGAGATC 96
consensus_7938#1 AGAGCGGCGGCGGCGATGGAGGGGTGGGACAAGGGGACGAAGAGCGTGGTGGGCGAGATC 120
consensus_7938#2 ------------------------------------------------------------
consensus_7938#0 CCGCTGCTGTCGACGCGGGCGGGGCCCCGGGACGGCGAGGCGTGGCGGCAGCGTCTCAAG 156
consensus_7938#1 CCGCTGCTGTCGACGCGGGCGGGGCCCCGGGACGGCGAGGCGTGGCGGCAGCGTCTCAAG 180
consensus_7938#2 ------------------------------------------------------------
consensus_7938#0 GAGGAGTACCGCGCGCTGATCGCCTACACGTCGGTGAACAAGTCCAAGGACAACGACTGG 216
consensus_7938#1 GAGGAGTACCGCGCGCTGATCGCCTACACGTCGGTGAACAAGTCCAAGGACAACGACTGG 240
consensus_7938#2 ------------------------------------------------------------
consensus_7938#0 TTCCGCATCTCCGCCGCCAACCCCGAGGGCACCCGCTGGGAGGGCACCTGCTGGTACGTC 276
consensus_7938#1 TTCCGCATCTCCGCCGCCAACCCCGAGGGCACCCGCTGGGAGGGCACCTGCTGGTACGTC 300
consensus_7938#2 ------------------------------------------------------------
consensus_7938#0 CACAACCTCCGCCGCTACGAGTTCCCCCTCCAGTCCGACATCCCCGTCGCCTACCCCCAG 336
consensus_7938#1 CACAACCTCCGCCGCTACGAGTTCCCCCTCCAGTTCGACATCCCCGTCGCCTACCCCCAG 360
consensus_7938#2 ------------------------------------------------------------
consensus_7938#0 GTCGCCCCCGAGATCGAGCTCCCCACCCTCGATGGCAAGACCCACAAGATGTACCGTGGC 396
consensus_7938#1 GTCGCCCCCGAGATCGAGCTCCCCACCCTCGATGGCAAGACCCACAAGATGTACCGTGGC 420
consensus_7938#2 ---------------------------ATCGCCACCAAATCAGATCCAATTTCCCATAA- 32
*** *** * * ** * ** *
consensus_7938#0 GGGAAGATCTGCCTCACCGTGCACTTCAAGCCGCTGTGGGCGAAGAACTGCCCAAGGTTC 456
consensus_7938#1 GGGAAGATCTGCCTCACCGTGCACTTCAAGCCGCTGTGGGCGAAGAACTGCCCAAGGTTC 480
consensus_7938#2 -AAAAAATCAGATCCA------ATTCCACACGAGAATA--CATACCAGAGTTGAGGGCTT 83
** *** * ** * * ** * * * * * * * ** *
consensus_7938#0 GGGATCGCGCACGCGCTGTGCCTCGGCCTGGCGCCGTGGCTGGCGGCGGAGGTGCCGATT 516
consensus_7938#1 GGGATCGCGCACGCGCTGTGCCTCGGCCTGGCGCCGTGGCTGGCGGCGGAGGTGCCGATT 540
consensus_7938#2 GAA---GCGCTCGGAGTGAAGGGAGAAGAAGAGCGGCGGC-GGCGATGGAGGTGCCGATT 139
* **** ** ** * * ** * *** **** *************
consensus_7938#0 CTAGTCGATTCGGGCATGGTTAAGCACAAGGACGATGAGGCGGCTCCGGCCGATGCAGCG 576
consensus_7938#1 CTAGTCGATTCGGGCATGGTTAAGCACAAGGACGATGAGGCGGCTCCGGCCGATGCAGCG 600
consensus_7938#2 CTAGTCGATTCGGGCATGGTTAAGCACAAGGACGATGAGGCGGCTCCGGCCGATGCAGCG 199
************************************************************
consensus_7938#0 GCTGCTGCGTCTGGATCTGCCGCTGCTTCGTAATTATGCTCCTCCATTATGTTCAGTGGG 636
consensus_7938#1 GCTGCTGCGTCTGGATCTGCCGCTGCTTCGTAATTGTAAGTCTGTGTCATGT------GG 654
consensus_7938#2 GCTGCTGCGTCTGAATCTGCCGCTGCTTCGTAATTGTAAGTCTGTGTCATGT------GG 253
************* ********************* * ** * **** **
consensus_7938#0 CTTCATAGAGTTTCTGTATCAGCAGAATCAAACTCCTTATGCATAATCATAGGTATGTTC 696
consensus_7938#1 CTGTATCAGGGTTG---------GAAATCCACCCAGTTGTGAACTAATAAGAATA-ACAC 704
consensus_7938#2 CTGTATCAGGGTTG---------GAAATCCACCCAGTTGTGAACTAATAAGAATA-ACAC 303
** ** * ** **** * * ** ** * * * ** *
consensus_7938#0 TTTTTTATTTAGGATGAAACATGTTTCCTATTGATGGTTAACTAAGAATATTGTAAACTA 756
consensus_7938#1 CTATACAATGTTGATGCG-CTGATTTCTGGTTGAAGATACAGTTA--------------- 748
consensus_7938#2 CTATACAATGTTGATGCG-CTGATTTCTGGTTGAA------------------------- 337
* * * * **** * **** ****
consensus_7938#0 CTATAGGTTTCTGACATAACCATAAGAAACTGAAGTTCCATTTGTCTTTTTTTTTCTCCG 816
consensus_7938#1 ------------------------------------------------------------
consensus_7938#2 ------------------------------------------------------------
consensus_7938#0 AGTTCTGACAAGTTACAACTACAATAATCTGACCACACTTTTCTTTTGAAGTCTTTTTTT 876
consensus_7938#1 ------------------------------------------------------------
consensus_7938#2 ------------------------------------------------------------
consensus_7938#0 GTCCGACTAGTACCAAAACCGATGAAGCAAAACAGTGCCATGTCTTACTCTGTTGCATCA 936
consensus_7938#1 ------------------------------------------------------------
consensus_7938#2 ------------------------------------------------------------
consensus_7938#0 CCTAATATAGTTTATAGCCTCTTAAATATCCACTATCCTAGACATGCTTAGAATACTACG 996
consensus_7938#1 ------------------------------------------------------------
consensus_7938#2 ------------------------------------------------------------
consensus_7938#0 AATCAACTAAAGCTGAGTAAAGGACTCAAACTTGCATCTTCAGGGCAGGTATCATCTGGT 1056
consensus_7938#1 ------------------------------------------------------------
consensus_7938#2 ------------------------------------------------------------
consensus_7938#0 TGTATAGACAAGTCAGCTGGGAGTTTTTCTCTTTTTTCTTTTTTGATCTTTTTTTTGGTT 1116
consensus_7938#1 ------------------------------------------------------------
consensus_7938#2 ------------------------------------------------------------
consensus_7938#0 TCCACGTACCATTGTGGCACTTCATGTTGACATTTCTATTTAATGCCCTTAAGTTTTAAC 1176
consensus_7938#1 ------------------------------------------------------------
consensus_7938#2 ------------------------------------------------------------
consensus_7938#0 ATTTTCTCTTGAAATAATTTCTCCCAAGGATAAGCCAGAACAATTTATTTTAGTAGTTTG 1236
consensus_7938#1 ------------------------------------------------------------
consensus_7938#2 ------------------------------------------------------------
consensus_7938#0 AGATATGATTTCAGAATTCAGATGCCTCTTCCTTTAAGTTCTGGAGGCTTCATAGAGTTT 1296
consensus_7938#1 ------------------------------------------------------------
consensus_7938#2 ------------------------------------------------------------
consensus_7938#0 ATGTTTAACAGCACAACCGAATTCCTTATTAATCTCATTCTCCTTTGAATTGGTCTTTAC 1356
consensus_7938#1 ------------------------------------------------------------
consensus_7938#2 ------------------------------------------------------------
consensus_7938#0 CTTGCTTGCTGCAACATGTTTGTCATCGAAGAAGATATACAAGCTATGATTTCAGTGTTG 1416
consensus_7938#1 ------------------------------------------------------------
consensus_7938#2 ------------------------------------------------------------
consensus_7938#0 GTACCTTTTTTTCTCAATGTATTTCAATTTTTAACAGTCAAGTAAGTTGCAACAAATCAA 1476
consensus_7938#1 ------------------------------------------------------------
consensus_7938#2 ------------------------------------------------------------
consensus_7938#0 GAAGACAATTAGCTGTTTTGTGAGCAACCACCAATTTCACAATTTTGCATTTC 1529
consensus_7938#1 -----------------------------------------------------
consensus_7938#2 -----------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||