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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7942#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1701 fasta sequence
[CCATCACACTCCTCCCCCGCCGCGGCCGCCGCTGCGCGGTAGATCTCCTCCTCCTCCACCTCCACCGTCTCCTGCTCTTCCTCTCTCTCTTCTCGGAGGAAACCCCCAATTTATTCCTTCCCCGCAAACCCGCAGCCTTCCTAAAACGAATTAAATCTCCCTCCCTTATCCGCCACTGCAATCCCTCCCCACAAAATCTCGCTGCGCCGCGCGCTGTTTTAGGGTTTGAGCTCATGGCGGTGGAGGAGGCGAGCAGCAGCAGTGGCGGCGGTCGTGGTGGGGGTGGCGGTGGGGGTGGGGAGGAGGGGTTGTCCGGTTGCGGCGGTGGGTGGACGCGCGAGCAGGAGAAGGCGTTCGAGAACGCGCTGGCGACGGTGGGGGATGACGAGGAGGAAGGGGACGGGTTGTGGGAGAAGCTAGCGGAGGCCGTGGAGGGGAAGACGGCCGACGAGGTGAGGCGGCACTACGAGCTGCTGGTGGAGGACGTCGACGGCATCGAGGCCGGGCGGGTGCCGCTCCTGGTGTACGCCGGCGACGGGGGCGTCGAGGAGGGCTCTGCGGGAGGTGGGAAGAAGGGGGGTGGTGGGGGAGGAGGTGGAGGTGGAGGGGGGCATGGGGAGAAGGGGTCGGCTAAGTCCTCTGAGCAGGAGCGCCGGAAGGGGATCGCCTGGACGGAGGACGAGCACAGGCTGTTCCTTCTTGGACTTGAGAAGTACGGCAAAGGCGACTGGAGGAGTATCTCAAGAAACTTTGTGATCTCAAGGACACCCACCCAAGTAGCTAGTCATGCACAGAAGTATTTTATTCGCCTGAACTCAATGAACAGAGAGAGGCGGCGATCAAGTATACATGACATAACCAGCGTGAACAATGGAGATACATCTGCTGCTCAGGGGCCAATCACAGGTCAGCCAAATGGCCCATCAGCAAATCCTGGAAAATCCTCTAAGCAGTCTCTACAGCCAGCAAATGCGCCTCCAGGCGTCGATGCTTATGGTACGACAATTGGACAGCCAGTTGGTGGTCCTCTTGTGTCCGCAGTTGGCACTCCTGTTACACTTCCTGTTCCTGCTGCACCTCATATAGCCTATGGCATGCATGCCCCTGTCCCTGGAGCTGTAGTCCCTGGTGCCCCAGTAAACATGCCTCCAATGCCCTACCCCATGCCGCCACCAACATCTCATGGATGAGGGCTTTGAATACTACAGTTCTTCTAGACAAACTCATAATATCTGTCTTGTTTAGAGTTTCAATGCATGCTGTTATGTCTCAATAAAGCAATATCAATAAACTCTTGTACATTACAAATGGTTATTGAATGTAGCATTTTGGGGACATCCTGGACTGTATTTATCATCTTTGTTACGCCTGCACTTCGTTCCATCTTCAATGTACGCCTGCCACCCTGCCCCAGTCGTAAAATGGTTGGAATGCTGAATCTCCTTCAGCCCAGATGTAGTGGTTTATTATCTGAAAAGTAAATATCGAGTCAATACGTAATCATGAACATATGTAATGGTTCAGTAAGTATCCGACTATCTGATTCGTAATTATGAACAGATGTATTGGTTCACTACCTGATTCGTACTAGTAATGAACCTGGTGCAGGTACAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK068623 [CCATCACACTCCTCCCCCGCCGCGGCCGCCGCTGCGCGGTAGATCTCCTCCTCCTCCACCTCCACCGTCTCCTGCTCTTCCTCTCTCTCTTCTCGGAGGAAACCCCCAATTTATTCCTTCCCCGCAAACCCGCAGCCTTCCTAAAACGAATTAAATCTCCCTCCCTTATCCGCCACTGCAATCCCTCCCCACAAAATCTCGCTGCGCCGCGCGCTGTTTTAGGGTTTGAGCTCATGGCGGTGGAGGAGGCGAGCAGCAGCAGTGGCGGCGGTCGTGGTGGGGGTGGCGGTGGGGGTGGGGAGGAGGGGTTGTCCGGTTGCGGCGGTGGGTGGACGCGCGAGCAGGAGAAGGCGTTCGAGAACGCGCTGGCGACGGTGGGGGATGACGAGGAGGAAGGGGACGGGTTGTGGGAGAAGCTAGCGGAGGCCGTGGAGGGGAAGACGGCCGACGAGGTGAGGCGGCACTACGAGCTGCTGGTGGAGGACGTCGACGGCATCGAGGCCGGGCGGGTGCCGCTCCTGGTGTACGCCGGCGACGGGGGCGTCGAGGAGGGCTCTGCGGGAGGTGGGAAGAAGGGGGGTGGTGGGGGAGGAGGTGGAGGTGGAGGGGGGCATGGGGAGAAGGGGTCGGCTAAGTCCTCTGAGCAGGAGCGCCGGAAGGGGATCGCCTGGACGGAGGACGAGCACAGGCTGTTCCTTCTTGGACTTGAGAAGTACGGCAAAGGCGACTGGAGGAGTATCTCAAGAAACTTTGTGATCTCAAGGACACCCACCCAAGTAGCTAGTCATGCACAGAAGTATTTTATTCGCCTGAACTCAATGAACAGAGAGAGGCGGCGATCAAGTATACATGACATAACCAGCGTGAACAATGGAGATACATCTGCTGCTCAGGGGCCAATCACAGGTCAGCCAAATGGCCCATCAGCAAATCCTGGAAAATCCTCTAAGCAGTCTCTACAGCCAGCAAATGCGCCTCCAGGCGTCGATGCTTATGGTACGACAATTGGACAGCCAGTTGGTGGTCCTCTTGTGTCCGCAGTTGGCACTCCTGTTACACTTCCTGTTCCTGCTGCACCTCATATAGCCTATGGCATGCATGCCCCTGTCCCTGGAGCTGTAGTCCCTGGTGCCCCAGTAAACATGCCTCCAATGCCCTACCCCATGCCGCCACCAACATCTCATGGATGAGGGCTTTGAATACTACAGTTCTTCTAGACAAACTCATAATATCTGTCTTGTTTAGAGTTTCAATGCATGCTGTTATGTCTCAATAAAGCAATATCAATAAACTCTTGTACATTACAAATGGTTATTGAATGTAGCATTTTGGGGACATCCTGGACTGTATTTATCATCTTTGTTACGCCTGCACTTCGTTCCATCTTCAATGTACGCCTGCCACCCTGCCCCAGTCGTAAAATGGTTGGAATGCTGAATCT ]
[+] EMBL AK106166 [ ATCTCCTCCTCCTCCACCTCCACCGTCTCCTGCTCTTCCTCTCTCTCTTCTCGGAGGAAACCCCCAATTTATTCCTTCCCCGCAAACCCGCAGCCTTCCTAAAACGAATTAAATCTCCCTCCCTTATCCGCCGCTGCAATCCCTCCCCACAAAATCTCGCTGCGCCGCGCGCTGTTTTAGGGTTTGAGCTCATGGCGGTGGAGGAGGCGAGCAGCAGCAGTGGCGGCGGTCGTGGTGGGGGTGGCGGTGGGGGTGGGGAGGAGGGGTTGTCCGGTTGCGGCGGTGGGTGGACGCGCGAGCAGGAGAAGGCGTTCGAGAACGCGCTGGCGACGGTGGGGGATGACGAGGAGGAAGGGGACGGGTTGTGGGAGAAGCTAGCGGAGGCCGTGGAGGGGAAGACGGCCGACGAGGTGAGGCGGCACTACGAGCTGCTGGTGGAGGACGTCGACGGCATCGAGGCCGGGCGGGTGCCGCTCCTGGTGTACGCCGGCGACGGGGGCGTCGAGGAGGGCTCTGCGGGAGGTGGGAAGAAGGGGGGTGGTGGGGGAGGAGGTGGAGGTGGAGGGGGGCATGGGGAGAAGGGGTCGGCTAAGTCCTCTGAGCAGGAGCGCCGGAAGGGGATCGCCTGGACGGAGGACGAGCACAGGCTGTTCCTTCTTGGACTTGAGAAGTACGGCAAAGGCGACTGGAGGAGTATCTCAAGAAACTTTGTGATCTCAAGGACACCCACCCAAGTAGCTAGTCATGCACAGAAGTATTTTATTCGCCTGAACTCAATGAACAGAGAGAGGCGGCGATCAAGTATACATGACATAACCAGCGTGAACAATGGAGATACATCTGCTGCTCAGGGGCCAATCACAGGTCAGCCAAATGGCCCATCAGCAAATCCTGGAAAATCCTCTAAGCAGTCTCTACAGCCAGCAAATGCGCCTCCAGGCGTCGATGCTTATGGTACGACAATTGGACAGCCAGTTGGTGGTCCTCTTGTGTCCGCAGTTGGCACTCCTGTTACACTTCCTGTTCCTGCTGCACCTCATATAGCCTATGGCATGCATGCCCCTGTCCCTGGAGCTGTAGTCCCTGGTGCCCCAGTAAACATGCCTCCAATGCCCTACCCCATGCCGCCACCAACATCTCATGGATGAGGGCTTTGAATACTACAGTTCTTCTAGACAAACTCATAATATCTGTCTTGTTTAGAGTTTCAATGCATGCTGTTATGTCTCAATAAAGCAATATCAATAAACTCTTGTACATTACAAATGGTTATTGAATGTAGCATTTTGAGGACATCCTGGACTGTATTTATCATCTTTGTTACGCCTGCACTTCGTTCCATCTTCAATGTACGCCTGCCACCCTGCCCCAGTCGTAAAATGGTTGGAATGCTGAATCTCCTTCAGCCCAGATGTAGTGGTTTATTATCTGAAAAGTAAATATCGA ]
[+] EMBL AU071025 [ GCCTGCACTTCGTTCCATCTTCAATGTACGCCTGCCACCCTGCCCCAGTCGTAAAATGGTTGGAATGCTGAATCTCCTTCAGCCCAGATGTAGTGGTTTATTATCTGAAAAGTAAATATCGAGTCAATACGTAATCATGAACATATGTAATGGTTCAGTAAGTATCCGACTATCTGATTCGTAATTATGAACAGATGTATTGGTTCACTACCTGATTCGTACTAGTAATGAACCTGGTGCAGGTACAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_7942#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 465 fasta sequence
[GGCCCCATCACAGGTCAACACAATGGCCCATTCAGCAAATNCTGGAATCCTCTAAGCAGTCTCCACAGCCAGCAAATGCGCCTCCAGGTTTCGATGCTTATGGTACGACAATTGGACACCCGTTGGTGGTCCTCTTGTGTCCNGCAGTTGGCACTCCTGTTACACTTCCTGTTCACTGCTGCACCTCATATAGCCTATGGCATGCATGCCCCTGTCCCTGGAGCTGTAGTCCCCTGGTGCCCCAGTAAACATGCCTCCAATGCCCTACCCCATGCCGCCACCACATCTCATGGATGAGGGCTTTGAATGCTACAGTTCTTCTAGACAAACTCATAATATCTGTCTTGTTTAGAGTTTCAATGCATGCTGTTATGTCTCAATAAGCAATATCAATAAACTCTTGTACATTACAAATGGTTATTGAATGTAGCATTTTGAGGACATCCTGGACTGTAAAAAAAAAAA]
[+] EMBL BM038664 [GGCCCCATCACAGGTCAACACAATGGCCCATTCAGCAAATNCTGGAATCCTCTAAGCAGTCTCCACAGCCAGCAAATGCGCCTCCAGGTTTCGATGCTTATGGTACGACAATTGGACACCCGTTGGTGGTCCTCTTGTGTCCNGCAGTTGGCACTCCTGTTACACTTCCTGTTCACTGCTGCACCTCATATAGCCTATGGCATGCATGCCCCTGTCCCTGGAGCTGTAGTCCCCTGGTGCCCCAGTAAACATGCCTCCAATGCCCTACCCCATGCCGCCACCACATCTCATGGATGAGGGCTTTGAATGCTACAGTTCTTCTAGACAAACTCATAATATCTGTCTTGTTTAGAGTTTCAATGCATGCTGTTATGTCTCAATAAGCAATATCAATAAACTCTTGTACATTACAAATGGTTATTGAATGTAGCATTTTGAGGACATCCTGGACTGTAAAAAAAAAAA]
consensusID : consensus_7942#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 159 fasta sequence
[CCATCCCCCCCACCCAACATCCTCATGGATGAGGCCCTTTTGAATGCCTTACAGTTCTTCTAGACAAACTCATAATATCGGTCTTGTTTAGAGTTTCAAATGCATCCTGTTATGTCTCAATAACACCAATATCAATAAACTCTGGTCACATTCACAAAA]
[+] EMBL BI802430 [CCATCCCCCCCACCCAACATCCTCATGGATGAGGCCCTTTTGAATGCCTTACAGTTCTTCTAGACAAACTCATAATATCGGTCTTGTTTAGAGTTTCAAATGCATCCTGTTATGTCTCAATAACACCAATATCAATAAACTCTGGTCACATTCACAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7942#0 CCATCACACTCCTCCCCCGCCGCGGCCGCCGCTGCGCGGTAGATCTCCTCCTCCTCCACC 60
consensus_7942#1 ------------------------------------------------------------
consensus_7942#2 ------------------------------------------------------------
consensus_7942#0 TCCACCGTCTCCTGCTCTTCCTCTCTCTCTTCTCGGAGGAAACCCCCAATTTATTCCTTC 120
consensus_7942#1 ------------------------------------------------------------
consensus_7942#2 ------------------------------------------------------------
consensus_7942#0 CCCGCAAACCCGCAGCCTTCCTAAAACGAATTAAATCTCCCTCCCTTATCCGCCACTGCA 180
consensus_7942#1 ------------------------------------------------------------
consensus_7942#2 ------------------------------------------------------------
consensus_7942#0 ATCCCTCCCCACAAAATCTCGCTGCGCCGCGCGCTGTTTTAGGGTTTGAGCTCATGGCGG 240
consensus_7942#1 ------------------------------------------------------------
consensus_7942#2 ------------------------------------------------------------
consensus_7942#0 TGGAGGAGGCGAGCAGCAGCAGTGGCGGCGGTCGTGGTGGGGGTGGCGGTGGGGGTGGGG 300
consensus_7942#1 ------------------------------------------------------------
consensus_7942#2 ------------------------------------------------------------
consensus_7942#0 AGGAGGGGTTGTCCGGTTGCGGCGGTGGGTGGACGCGCGAGCAGGAGAAGGCGTTCGAGA 360
consensus_7942#1 ------------------------------------------------------------
consensus_7942#2 ------------------------------------------------------------
consensus_7942#0 ACGCGCTGGCGACGGTGGGGGATGACGAGGAGGAAGGGGACGGGTTGTGGGAGAAGCTAG 420
consensus_7942#1 ------------------------------------------------------------
consensus_7942#2 ------------------------------------------------------------
consensus_7942#0 CGGAGGCCGTGGAGGGGAAGACGGCCGACGAGGTGAGGCGGCACTACGAGCTGCTGGTGG 480
consensus_7942#1 ------------------------------------------------------------
consensus_7942#2 ------------------------------------------------------------
consensus_7942#0 AGGACGTCGACGGCATCGAGGCCGGGCGGGTGCCGCTCCTGGTGTACGCCGGCGACGGGG 540
consensus_7942#1 ------------------------------------------------------------
consensus_7942#2 ------------------------------------------------------------
consensus_7942#0 GCGTCGAGGAGGGCTCTGCGGGAGGTGGGAAGAAGGGGGGTGGTGGGGGAGGAGGTGGAG 600
consensus_7942#1 ------------------------------------------------------------
consensus_7942#2 ------------------------------------------------------------
consensus_7942#0 GTGGAGGGGGGCATGGGGAGAAGGGGTCGGCTAAGTCCTCTGAGCAGGAGCGCCGGAAGG 660
consensus_7942#1 ------------------------------------------------------------
consensus_7942#2 ------------------------------------------------------------
consensus_7942#0 GGATCGCCTGGACGGAGGACGAGCACAGGCTGTTCCTTCTTGGACTTGAGAAGTACGGCA 720
consensus_7942#1 ------------------------------------------------------------
consensus_7942#2 ------------------------------------------------------------
consensus_7942#0 AAGGCGACTGGAGGAGTATCTCAAGAAACTTTGTGATCTCAAGGACACCCACCCAAGTAG 780
consensus_7942#1 ------------------------------------------------------------
consensus_7942#2 ------------------------------------------------------------
consensus_7942#0 CTAGTCATGCACAGAAGTATTTTATTCGCCTGAACTCAATGAACAGAGAGAGGCGGCGAT 840
consensus_7942#1 ------------------------------------------------------------
consensus_7942#2 ------------------------------------------------------------
consensus_7942#0 CAAGTATACATGACATAACCAGCGTGAACAATGGAGATACATCTGCTGCTCAGGGGCCAA 900
consensus_7942#1 -----------------------------------------------------GGCCCCA 7
consensus_7942#2 ------------------------------------------------------------
consensus_7942#0 TCACAGGTCAGCCAAATGGCCCAT-CAGCAAATCCTGGAAAATCCTCTAAGCAGTCTCTA 959
consensus_7942#1 TCACAGGTCAACACAATGGCCCATTCAGCAAATNCTGGA--ATCCTCTAAGCAGTCTCCA 65
consensus_7942#2 ------------------------------------------------------------
consensus_7942#0 CAGCCAGCAAATGCGCCTCCAGGCGTCGATGCTTATGGTACGACAATTGGACAGCCAGTT 1019
consensus_7942#1 CAGCCAGCAAATGCGCCTCCAGGTTTCGATGCTTATGGTACGACAATTGGACACCC-GTT 124
consensus_7942#2 ------------------------------------------------------------
consensus_7942#0 GGTGGTCCTCTTGTGTCCG-CAGTTGGCACTCCTGTTACACTTCCTGTTC-CTGCTGCAC 1077
consensus_7942#1 GGTGGTCCTCTTGTGTCCNGCAGTTGGCACTCCTGTTACACTTCCTGTTCACTGCTGCAC 184
consensus_7942#2 ------------------------------------------------------------
consensus_7942#0 CTCATATAGCCTATGGCATGCATGCCCCTGTCCCTGGAGCTGTAGTCCC-TGGTGCCCCA 1136
consensus_7942#1 CTCATATAGCCTATGGCATGCATGCCCCTGTCCCTGGAGCTGTAGTCCCCTGGTGCCCCA 244
consensus_7942#2 ------------------------------------------------------------
consensus_7942#0 GTAAACATGCCTCCAATGCCCTACCCCATGCCGCCACCAACATCTCATGGATGAGGGC-- 1194
consensus_7942#1 GTAAACATGCCTCCAATGCCCTACCCCATGCCGCCACCA-CATCTCATGGATGAGGGC-- 301
consensus_7942#2 --------------------CCATCCCCCCCACCCAACA--TCCTCATGGATGAGGCCCT 38
* * *** * *** ** ************* *
consensus_7942#0 TTTGAATAC--TACAGTTCTTCTAGACAAACTCATAATATCTGTCTTGTTTAGAGTTTCA 1252
consensus_7942#1 TTTGAATGC--TACAGTTCTTCTAGACAAACTCATAATATCTGTCTTGTTTAGAGTTTCA 359
consensus_7942#2 TTTGAATGCCTTACAGTTCTTCTAGACAAACTCATAATATCGGTCTTGTTTAGAGTTTCA 98
******* * ****************************** ******************
consensus_7942#0 A-TGCATGCTGTTATGTCTCAATAAAGC-AATATCAATAAACTCTTGT-ACATT-ACAAA 1308
consensus_7942#1 A-TGCATGCTGTTATGTCTCAATAA-GC-AATATCAATAAACTCTTGT-ACATT-ACAAA 414
consensus_7942#2 AATGCATCCTGTTATGTCTCAATAACACCAATATCAATAAACTCTGGTCACATTCACAAA 158
* ***** ***************** * **************** ** ***** *****
consensus_7942#0 TGGTTATTGAATGTAGCATTTTGGGGACATCCTGGACTGTATTTATCATCTTTGTTACGC 1368
consensus_7942#1 TGGTTATTGAATGTAGCATTTTGAGGACATCCTGGACTGTAAAAAAAAAAA--------- 465
consensus_7942#2 A----------------------------------------------------------- 159
consensus_7942#0 CTGCACTTCGTTCCATCTTCAATGTACGCCTGCCACCCTGCCCCAGTCGTAAAATGGTTG 1428
consensus_7942#1 ------------------------------------------------------------
consensus_7942#2 ------------------------------------------------------------
consensus_7942#0 GAATGCTGAATCTCCTTCAGCCCAGATGTAGTGGTTTATTATCTGAAAAGTAAATATCGA 1488
consensus_7942#1 ------------------------------------------------------------
consensus_7942#2 ------------------------------------------------------------
consensus_7942#0 GTCAATACGTAATCATGAACATATGTAATGGTTCAGTAAGTATCCGACTATCTGATTCGT 1548
consensus_7942#1 ------------------------------------------------------------
consensus_7942#2 ------------------------------------------------------------
consensus_7942#0 AATTATGAACAGATGTATTGGTTCACTACCTGATTCGTACTAGTAATGAACCTGGTGCAG 1608
consensus_7942#1 ------------------------------------------------------------
consensus_7942#2 ------------------------------------------------------------
consensus_7942#0 GTACAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1668
consensus_7942#1 ------------------------------------------------------------
consensus_7942#2 ------------------------------------------------------------
consensus_7942#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1701
consensus_7942#1 ---------------------------------
consensus_7942#2 ---------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||