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Oryza sativa
cluster # 7950 cluster # 7950       Sequences # 5       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7950#0 length = 1082 sequences # 5  

consensusID : consensus_7950#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1082
fasta sequence
                              [ACGCTACTCCCATCCCCACTCTCGTCGCTCGTCGGTATACCAAACCGAAAAGCTAGTCAATCCGACCCCACCCGATCCGATGGCCGCCACATCGCCGGACTCCGGCGACCTCATCCTGGTCGAGCCGGCCAAGCCGGGGTCCCGGGTCGCCGTCGTCACCATCAACCGGCCCAAAGCGCTGAACGCGCTGACGCGGCCCATGATGGTCTCACTGGCCGCGGCGTTCCGGCGGCTGGACGCCGACGACGGGGTGGCGGCGGTGGTGCTCGCGGGGCGCGGCCGCGCGTTCTGCTCCGGCGTGGACCTGACCGCTGCGGAGGAGGTGTTCAAGGGCGACGTGAAGGATCCCGCCGCCGACCCCGTCGTCCAGATGGAGCGCTGTCGCAAGCCCATCGTCGGCGCCATCGCCGGATTCGCCGTCACCGCCGGATTTGAGATCGCCCTCGCCTGCGACATCCTAGTGGCCGGCCGCTCCGCTAAGTTCATCGACACCCACGCCAAGTTTGGGATATTCCCTTCTTGGGGTCTTTCACAGAAGCTTTCTCGTGTCATTGGACCAAATAGAGCACGGGAAGTGTCGTTAACTTGCATGCCTATCACAGCTGAAATGGCGGAGAA-GTGGGGTCTTGTTAACCACATTGTGGATGATACCCAGGTGCTGAGTAAGGCAATAGAGGTCTGTGAGGCCATTGCAAGGAACAATCGCAACTTGGTTGTGTTGTATAAATCTGTTATAAATGACGGGCTCCAGCTGGACTTGGAACATGCTCGAGCTCTTGAAAAGGAAAGAGCTCA-TGACTATTACAATGGTATGACAAAAGAGCAATTCGCAAGTATGCAGAAATTTATACAGGGCCGGAGTTCGAAGCCACCATCAAAGCTGTGATGATATATGTTCTGTACCACTGTATGTACCGAAAT-ATCAATGTACTGTATACATCCACT-GAAGTGTTCAATGACC-TGAAAGAAAAATAAACACTGCCAATGTTGCATACAAAGAAAGTACCATCTTCACATGTGTTATTGGAAGAGTATCGCAGCCTATGCTGCTGTTTTCCATTCTGATGTTGGGCGCCGCGAGC]

[+] EMBL AK068241             [ACGCTACTCCCATCCCCACTCTCGTCGCTCGTCGGTATACCAAACCGAAAAGCTAGTCAATCCGACCCCACCCGATCCGATGGCCGCCACATCGCCGGACTCCGGCGACCTCATCCTGGTCGAGCCGGCCAAGCCGGGGTCCCGGGTCGCCGTCGTCACCATCAACCGGCCCAAAGCGCTGAACGCGCTGACGCGGCCCATGATGGTCTCACTGGCCGCGGCGTTCCGGCGGCTGGACGCCGACGACGGGGTGGCGGCGGTGGTGCTCGCGGGGCGCGGCCGCGCGTTCTGCTCCGGCGTGGACCTGACCGCTGCGGAGGAGGTGTTCAAGGGCGACGTGAAGGATCCCGCCGCCGACCCCGTCGTCCAGATGGAGCGCTGTCGCAAGCCCATCGTCGGCGCCATCGCCGGATTCGCCGTCACCGCCGGATTTGAGATCGCCCTCGCCTGCGACATCCTAGTGGCCGGCCGCTCCGCTAAGTTCATCGACACCCACGCCAAGTTTGGGATATTCCCTTCTTGGGGTCTTTCACAGAAGCTTTCTCGTGTCATTGGACCAAATAGAGCACGGGAAGTGTCGTTAACTTGCATGCCTATCACAGCTGAAATGGCGGAGAA GTGGGGTCTTGTTAACCACATTGTGGATGATACCCAGGTGCTGAGTAAGGCAATAGAGGTCTGTGAGGCCATTGCAAGGAACAATCGCAACTTGGTTGTGTTGTATAAATCTGTTATAAATGACGGGCTCCAGCTGGACTTGGAACATGCTCGAGCTCTTGAAAAGGAAAGAGCTCA TGACTATTACAATGGTATGACAAAAGAGCAATTCGCAAGTATGCAGAAATTTATACAGGGCCGGAGTTCGAAGCCACCATCAAAGCTGTGATGATATATGTTCTGTACCACTGTATGTACCGAAAT ATCAATGTACTGTATACATCCACT GAAGTGTTCAATGACC TGAAAGAAAAATAAACACTGCCAATGTTGCATACAAAGAAAGTACCATCTTCACAT                                                                 ]
[+] EMBL CA755477             [                                                                                                                                                                                                                                                                                                                                                                           CGTCCAGATGGAGCGCTGTCGCAAGCCCATCGTCGGCGCCATCGCCGGATTCGCCGTCACCGCCGGATTTGAGATCGCCCTCGCCTGCGACATCCTAGTGGCCGGCCGCTCCGCTAAGTTCATCGACACCCACGCCAAGTTTGGGATATTCCCTTCTTGGGGTCTTTCACAGAAGCTTTCTCGTGTCATTGGACCAAATAGAGCACGGGAAGTGTCGTTAACTTGCATGCCTATCACAGCTGAAATGGCGGAGAA GTGGGGTCTTGTTAACCACATTGTGGATGATACCCAGGTGCTGAGTAAGGCAATAGAGGTCTGTGAGGCCATTGCAAGGAACAATCGCAACTTGGTTGTGTTGTATAAATCTGTTATAAATGACGGGCTCCAGCTGGACTTGGAACATGCTCGAGCTCTTGAAAAGGAAAGAGCTCA TGACTATTACAATGGTATGACAAAAGAGCAATTCGCAAGTATGCAGAAATTTATACAGGGCCGGAGTTCGAAGCCACCATCANAGCTGTGATGATATATGTTCTGGACCACTGTATGTACCGAAATNATC ATGTACTGTATACATCCACTGGAAGGGTTCAATGACC cct                                                                                                                      ]
[-] EMBL BI306726             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TCGTTAACTTGCATGCCTATCACAGCTGAAATGGCGGAGAA GTGGGGTCTTGTTAACCACATTGTGGATGATACCCAGGTGCTGAGTAAGGCAATAGAGGTCTGTGAGGCCATTGCAAGGAACAATCGCAACTTGGTTGTGTTGTATAAATCTGTTATAAATGACGGGCTCCAGCTGGACTTGGAACATGCTCGAGCTCTTGAAAAGGAAAGAGCTCA TGACTATTACAATGGTATGACAAAAGAGCAATTCGCAAGTATGCAGAAATTTATACAGGGCCGGAGTTCGAAGCCACCATCAAAGCTGTGATGATATATGTTCTGTACCACTGTATGTACCGAAAT ATCAATGTACTGTATACATCCATT GAAGTGTTCAATGACC TGAAAGAAAAATAAACACTGCCAATGTTGCATACAAAGAAAGTACCATCTTCACATGTGTTATTGGAAGAGTATCGCAGCCTATGCTGCTGTTTTCCATTC                    ]
[-] EMBL CB967164             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TGCATGCCTATCACAGCTGAAATGGCGGAGAACGTGGGGTCTTGTTAACCACATTGTGGATGATACCCAGGTGCTGAGTAAGGCAATAGAGGTCTGTGAGGCCATTGCAAGGAACAATCGCAACTTGGTTGTGTTGTATAAATCTGTTATAAATGACGGGCTCCAGCTGGACTTGGAACATGCTCGAGCTCTTGAAAAGGAAAGAGCTCACTGACTATTACGATGGTATGACAAAAGAGCTATTCGCAAGTATGCAGCAATTTATACCGGGCCGGAGTTCGAACCCACCATCAAAGCTGTGATGATATATGTTCTGTACCCCTGTATGTACCGACAT ATCGATGTACTGTATACATCCATT GAAGTGTTCAATGACG TGGAAGCAACATCCACCCTGCCAATGTCGCATAC AAGTAAGTACCCTCTTCACATGTGTTATTGGAAGAGTATCGCAGCCTATGCTGCTGTTTTCCATTCTGATGTTGGGCGCCGCGAGC]
[-] EMBL CB966462             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AATGACCGTGAAAGAAAAATAAACACTGCCAATGTTGCATACAAAGAAAGTACCATCTTCACATGTGTTATTGGAAGAGTATCGCAGCCTAgc                                    ]


>consensus_7950#0 ACGCTACTCCCATCCCCACTCTCGTCGCTCGTCGGTATACCAAACCGAAAAGCTAGTCAA TCCGACCCCACCCGATCCGATGGCCGCCACATCGCCGGACTCCGGCGACCTCATCCTGGT CGAGCCGGCCAAGCCGGGGTCCCGGGTCGCCGTCGTCACCATCAACCGGCCCAAAGCGCT GAACGCGCTGACGCGGCCCATGATGGTCTCACTGGCCGCGGCGTTCCGGCGGCTGGACGC CGACGACGGGGTGGCGGCGGTGGTGCTCGCGGGGCGCGGCCGCGCGTTCTGCTCCGGCGT GGACCTGACCGCTGCGGAGGAGGTGTTCAAGGGCGACGTGAAGGATCCCGCCGCCGACCC CGTCGTCCAGATGGAGCGCTGTCGCAAGCCCATCGTCGGCGCCATCGCCGGATTCGCCGT CACCGCCGGATTTGAGATCGCCCTCGCCTGCGACATCCTAGTGGCCGGCCGCTCCGCTAA GTTCATCGACACCCACGCCAAGTTTGGGATATTCCCTTCTTGGGGTCTTTCACAGAAGCT TTCTCGTGTCATTGGACCAAATAGAGCACGGGAAGTGTCGTTAACTTGCATGCCTATCAC AGCTGAAATGGCGGAGAAGTGGGGTCTTGTTAACCACATTGTGGATGATACCCAGGTGCT GAGTAAGGCAATAGAGGTCTGTGAGGCCATTGCAAGGAACAATCGCAACTTGGTTGTGTT GTATAAATCTGTTATAAATGACGGGCTCCAGCTGGACTTGGAACATGCTCGAGCTCTTGA AAAGGAAAGAGCTCATGACTATTACAATGGTATGACAAAAGAGCAATTCGCAAGTATGCA GAAATTTATACAGGGCCGGAGTTCGAAGCCACCATCAAAGCTGTGATGATATATGTTCTG TACCACTGTATGTACCGAAATATCAATGTACTGTATACATCCACTGAAGTGTTCAATGAC CTGAAAGAAAAATAAACACTGCCAATGTTGCATACAAAGAAAGTACCATCTTCACATGTG TTATTGGAAGAGTATCGCAGCCTATGCTGCTGTTTTCCATTCTGATGTTGGGCGCCGCGA GC



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)