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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7956#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 527 fasta sequence
[ATCTATAGAGAATCCTCGTTCATTTCTTCTTTTTGTCTCATATAATCAAGGAATGGTATATATCTAAATCCATCTAATTTCACCTATAAAAGAAAGATTACTATTCCTTGGTAATCTATAGGAAGGGATTGTCTTTTTCGTTTTTAGTTCGGAATTTCGCCTAAACAAAAGAAATACAAATGATCTTGGGCAATAATATCTGATCATATACGTATTCCCATAAGGAAGGAGGATTTTC-ATGCGGGATATAAAAACATATCTCTCTGTAGCA-CCCGTGCTAAGTACTCTATGGTTTGGGGCTTTAGCAGGTTT-ATTGATAGAAA-TTAATCGTTTATTTCCAGATGCTTTGTCATTCCCCTTTTTTTCATTCTAGTTGTTGCTATGTGAGGAATAGAGTTCTTCGTGACATGATAAAAAATTCCCACTTTTCAATCCCTTTTTAGTATAGGAAAGAAAAAGAAAGAAAAGATAGATTGGGCTTGGACCTTAGAGTCATGAAAAATTTGGTAAATCTCATTTTTGAAAAA]
[+] EMBL BI803851 [ATCTATAGAGAATCCTCGTTCATTTCTTCTTTTTGTCTCATATAATCAAGGAATGGTATATATCTAAATCCATCTAATTTCACCTATAAAAGAAAGATTACTATTCCTTGGTAATCTATAGGAAGGGATTGTCTTTTTCGTTTTTAGTTCGGAATTTCGCCTAAAC AAAGAAATACCAATGATCTTGGGCAATAATATCTGATCATATACGTATT CCATAAGGAAGGAGGATTTTC ATGCGGGATATAAAAACATATCTCTCTGTAGCACCCCGTGCTAAGTACTCTATGGTTTGGGGCTTTAGCAGGTTT ATTGATAGAAA TTAATCGTTTATTTCCAGATGCTTTGTCATTCCCCTTTTTTTCATTCTAGTTGTTGCTATGTGAGGAATAGAGTTCTTCGTGACATGATAAAAAATTCCCACTTTTCAATCCCTTTTTAGTATA AAAAAAA ]
[+] EMBL BI801873 [ TAATCTATAGGAAGGGATTGTCTTTTTCGTTTTTAGTTCGGAATTTCGCCTAAACAAAAGAAATACAAATGATCTTGGGCAATAATATCTGATCATATACGTATTCCCATAAGGAAGGAGGATTTTCAATGCGGGATATAAAAACATATCTCTCTGTAGCA CCCGTGCTAAGTACTCTATGGTTTGGGGCTTTAGCAGGTTTAATTGATAGAAACTTAATCGTTTATTTCCAGATGCTTTGTCATTCCCCTTTTTTTCATTCTAGTTGTTGCTATGTGAGGAATAGAGTTCTTCGTGACATGATAAAAAATTCCCACTTTTCAATCCCTTTTTAGTATAGGAAAGAAAAAGAAAGAAAAGATAGATTGGGCTTGGACCTTAGAGTCATGAAAAATTTGGTAAATCTCATTTTTGAAAAA]
[+] EMBL BI800356 [ TAATCTATAGGAAGGGATTGTCTTTTTCGTTTTTAGTTCGGAATTTCGCCTAAACCAAAGAAATACAAATGATCTTGGGCAATAATATCTGATCATATACGTATTCCCATAAGGAAGGAGGATTTTC ATGCGGGATATAAAAACATATCTCTCTGTAGCA CCCGTGCTAAGTACTCTATGGTTTGGGGCTTTAGCAGGTTT ATTGATAGAAA TTAATCGTTTATTTCCAGATGCTTTGTCATTCCCCTTTTTTTCATTCTAGTTGTTGCTATGTGAGGAATAGAGTTCTTCGTGACATGATAAAAAATTCCCACTTTTC ATCCCTTTTTAGTATAGGAAAGAAAAA ]
[+] EMBL BI800780 [ TCATATACGTATTCCAATAAGGAAGGAGGATTTTCAATGCGGGATATAAAAACATATCTCTCTGTAGCA CCCGTGCTAAGTACTCTATGGTTTGGGGCTTTAGCAGGTTT ATTGATAGAAA TTAATCGTTTATTTCCAGATGCTTTGTCATTCCCCTTTTTTTCATTCTAGTTGTTGCTATGTGAGGAATAGAGTTCTTCGTGACATGATAAAAAATTCCCACTTTTCAATCCCTTTTTAGTATAGGAAAGAAAAA ]
consensusID : consensus_7956#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 499 fasta sequence
[GGACGAATGCCTGCGTGTGCATGTTGCTTTCATTGTTGTGGGTGCTGCGATGATGATGCAAGGAATGGTGATCGATGATGCTAAATGCCCATGCTGAATTTGCACCTGATGAAAAGAACAGATGTACTATTCCTTGGTAATCTATAGGAAGGGATTGTCTTTTTCGTTTTTACGTTCGGAACTTTCGCCTTAACCAAAGAAATACCACATGATCTTGGGCAACTAATATCTGATCACTATACGTATTCCCATAAGGGAAGGAGGATGTTTCAATGCGGGATATGAAAAACATGATCTCCTCTGTAGCACCCGTGCTCCCCCTACTCTATGGTTTCGGGGCTTTAGCAGGTTTATTGATAGAAATTAATGCGTTTATTTGCCAGATGCTTTGTCATTCCCCTTTTTTTCATTCTAGTTGTTGCTATGTGAGGAATAGAGTTCTTCGCTGACATGATAAATTCCCACTTTTCCATCCCTTTTTACTATAGGAAAAAAAAAA]
[+] EMBL BI802126 [GGACGAATGCCTGCGTGTGCATGTTGCTTTCATTGTTGTGGGTGCTGCGATGATGATGCAAGGAATGGTGATCGATGATGCTAAATGCCCATGCTGAATTTGCACCTGATGAAAAGAACAGATGTACTATTCCTTGGTAATCTATAGGAAGGGATTGTCTTTTTCGTTTTTACGTTCGGAACTTTCGCCTTAACCAAAGAAATACCACATGATCTTGGGCAACTAATATCTGATCACTATACGTATTCCCATAAGGGAAGGAGGATGTTTCAATGCGGGATATGAAAAACATGATCTCCTCTGTAGCACCCGTGCTCCCCCTACTCTATGGTTTCGGGGCTTTAGCAGGTTTATTGATAGAAATTAATGCGTTTATTTGCCAGATGCTTTGTCATTCCCCTTTTTTTCATTCTAGTTGTTGCTATGTGAGGAATAGAGTTCTTCGCTGACATGATAAATTCCCACTTTTCCATCCCTTTTTACTATAGGAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7956#0 -----ATCTATAGAGAATCCTCGTTCATTTCTTCTTTTTGTCTCATATAAT-------CA 48
consensus_7956#1 GGACGAATGCCTGCGTGTGCATGTTGCTTTCATTGTTGTGGGTGCTGCGATGATGATGCA 60
* * * * * *** **** * ** ** * * ** **
consensus_7956#0 AGGAATGGT-----ATATATCTAAAT--CCAT-CTAATTT--CACCT-ATAAAAGAAA-- 95
consensus_7956#1 AGGAATGGTGATCGATGATGCTAAATGCCCATGCTGAATTTGCACCTGATGAAAAGAACA 120
********* ** ****** **** ** * ** ***** ** *** **
consensus_7956#0 GAT-TACTATTCCTTGGTAATCTATAGGAAGGGATTGTCTTTTTCGTTTTTA-GTTCGGA 153
consensus_7956#1 GATGTACTATTCCTTGGTAATCTATAGGAAGGGATTGTCTTTTTCGTTTTTACGTTCGGA 180
*** ************************************************ *******
consensus_7956#0 A-TTTCGCCTAAACAAAAGAAATACAA-ATGATCTTGGGCAA-TAATATCTGATCA-TAT 209
consensus_7956#1 ACTTTCGCCTTAACCAAAGAAATACCACATGATCTTGGGCAACTAATATCTGATCACTAT 240
* ******** *** ********** * ************** ************* ***
consensus_7956#0 ACGTATTCCCATAAGG-AAGGAGGATTTTC--ATGCGGGATAT-AAAAACAT-ATCTC-T 263
consensus_7956#1 ACGTATTCCCATAAGGGAAGGAGGATGTTTCAATGCGGGATATGAAAAACATGATCTCCT 300
**************** ********* ** *********** ******** ***** *
consensus_7956#0 CTGTAGCACCCGTGCTAAG--TACTCTATGGTTT-GGGGCTTTAGCAGGTTTATTGATAG 320
consensus_7956#1 CTGTAGCACCCGTGCTCCCCCTACTCTATGGTTTCGGGGCTTTAGCAGGTTTATTGATAG 360
**************** ************* *************************
consensus_7956#0 AAATTAAT-CGTTTATTT-CCAGATGCTTTGTCATTCCCCTTTTTTTCATTCTAGTTGTT 378
consensus_7956#1 AAATTAATGCGTTTATTTGCCAGATGCTTTGTCATTCCCCTTTTTTTCATTCTAGTTGTT 420
******** ********* *****************************************
consensus_7956#0 GCTATGTGAGGAATAGAGTTCTTCG-TGACATGATAAAAAATTCCCACTTTTCAATCCCT 437
consensus_7956#1 GCTATGTGAGGAATAGAGTTCTTCGCTGACATGATAAA---TTCCCACTTTTCCATCCCT 477
************************* ************ ************ ******
consensus_7956#0 TTTTAGTATAGGAAAGAAAAAGAAAGAAAAGATAGATTGGGCTTGGACCTTAGAGTCATG 497
consensus_7956#1 TTTTACTATAGGAAAAAAAAAA-------------------------------------- 499
***** ********* *****
consensus_7956#0 AAAAATTTGGTAAATCTCATTTTTGAAAAA 527
consensus_7956#1 ------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||