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Oryza sativa
cluster # 7960 cluster # 7960       Sequences # 5       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7960#0 length = 634 sequences # 5  

consensusID : consensus_7960#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 634
fasta sequence
                              [GCTAAAGCAAACCAAGAGACGAGGTATATATCTCGACGACGAGACGAAGCAAAGCAAGCAAGGTGTGATCTGATCCAAGTTTTTGGAGAATGGCGTCCATGATGGGAGGAGACTTCGTGGAGGCGTACGTGCTCAAGAACGCCTACAAGGAGAAGCTCAGGCGCATGGAGGCCGCGGAGGCGGCT-GCGGCGGCGGCGGTGGCCGGGAAGAAGGACGTCGCCGCCGCCGCCGATGGCTCTGCGGGGCAGAAGAAGGCGGCTGCGGGCGGCGGGATGTTTGGGTTCATGAAGAAGAAGGTGCACCCCAGAGCGGCGGAGACGGCGCCGGCGCCGGCCATGGAAACCAGTAGCGCTTGATCGATCAAGAGCTGGCCTTCTTCCTCCCCTCCTCCTGTTGATTCCGCTCTTTTGCTACTAGTTGAGCTTGTTCCTGGGTTTAATTATATTATTACTAGTAGTAATCTCCAGCTGGCTGTTCGATAGGATGATGAAGATTGTGTAGTGTGTTCTTTACTTGTTTCTCTTCTTTTGAA-GAGGTGTGTGTAACTCACTCCATGTAAATGTTGGTTCATTTGTTGCTTTCTTTACTTGAAATGGGAGTAAAAGAAAAGTAATTAAGTAAAAGAGGACTCATC]

[+] EMBL AK121198             [GCTAAAGCAAACCAAGAGACGAGGTATATATCTCGACGACGAGACGAAGCAAAGCAAGCAAGGTGTGATCTGATCCAAGTTTTTGGAGAATGGCGTCCATGATGGGAGGAGACTTCGTGGAGGCGTACGTGCTCAAGAACGCCTACAAGGAGAAGCTCAGGCGCATGGAGGCCGCGGAGGCGGCT GCGGCGGCGGCGGTGGCCGGGAAGAAGGACGTCGCCGCCGCCGCCGATGGCTCTGCGGGGCAGAAGAAGGCGGCTGCGGGCGGCGGGATGTTTGGGTTCATGAAGAAGAAGGTGCACCCCAGAGCGGCGGAGACGGCGCCGGCGCCGGCCATGGAAACCAGTAGCGCTTGATCGATCAAGAGCTGGCCTTCTTCCTCCCCTCCTCCTGTTGATTCCGCTCTTTTGCTACTAGTTGAGCTTGTTCCTGGGTTTAATTATATTATTACTAGTAGTAATCTCCAGCTGGCTGTTCGATAGGATGATGAAGATTGTGTAGTGTGTTCTTTACTTGTTTCTCTTCTTTTGAA GAGGTGTGTGTAACTCACTCCATGTAAATGTTGGTTCATTTGTTGCTTTCTTTACTTGAAATGGGAGTAAAAGAAAA                         ]
[+] EMBL CF325911             [                     AGGTATATATCTCGACGACGAGACGAAGCAAAGCAAGCAAGGTGTGATCTGATCCAAGTTTTTGGAGAATGGCGTCCATGATGGGAGGAGACTTCGTGGAGGCGTACGTGCTCAAGAACGCCTACAAGGAGAATTTCATGCGCATGGAGGCCGCGGAGGCGGCT GCGGCGGCGGCGGTGGCCGGGAAGAAGGACGTCGCCGCCGCCGCCGATGGCTCTGCGGGGCAGAAGAAGGCGGCTGCGGGCGGCGGGATGTTTGGGTTCATGAAGAAGAAGGTGCACCCCAGAGCGGCGGAGACGGCGCCGGCGCCGGCCATGGAAACCAGTAGCGCTTGATCGATCAAGAGCTGGCCTTCTTCCTCCCCTCCTCCTGTTGATTCCGCTCTTTTGCTACTAGTTGAGCTTGTTCCTGGGTTTAATTATATTATTACTAGTAGTAATCTCCAGCTGGCTGTTCGATAGGATGATGAAGATTGTGTAGTGTGTTCTTTACTTGTTTCTCTTCTTTTGAA GAGGTGTGTGTAACTCACTCCATGTAAATGTTGGTTCATTTGTTGCTTTC                                                    ]
[+] EMBL CA756447             [                                TCGACGACGAGACGAAGCAAAGCAAGCAAGGTGTGATCTGATCCAAGTTTTTGGAGAATGGCGTCCATGATGGGAGGAGACTTCGTGGAGGCGTACGTGCTCAAGAACGCCTACCAGGAGAAGCTCAGGCGCATGGAGGCCGCGGAGGCGGCT GCGGCGGCGGCGGTGGCCGGGAAGAAGGACGTCGCCGCCGCCGCCGATGGCTCTGCGGGGCAGAAGAAGGCGGCTGCGGGCGGCGGGATGTTTGGGTTCATGAAGAAGAAGGTGCACCCCAGAGCGGCGGATACGGCGCCGGCGCCGGCCATGGAAACCAGTAGCGCTTGATCGATCAAGAGCTGGCCTTCTTCCTCCCCTCCTCCTGTTGATTCCGCTCTTTTGCTACTAGTTGAGCTTGTTCCTGGGTTTAATTATATTATTACTAGTAGTAATCTCCAGCTGGCTGTTCGATAGGATGATGAAGATTGTGTAGTGTGTTCTTTACTTGTTTCTCTTCTTTTGAAGGAGGTGTGTGGTACTCACTCCATGTAAATGTTGGTTCATTTGTTGCTTTCTTTACTTGAAATGGGAGTAAAAGAAAAGTAATTAAGTAAAAGAGGACTCATC]
[-] EMBL CB966856             [                                                             GGTGTGATCTGATCCAAGTTTTTGGAGAATGGCGTCCATGATGGGAGGAGACTTCGTGGAGGCGTACGTGCTCAAGAACGCCTACAAGGAGAAGCTCAGGCGCATGGAGCCCGCGGAGGCGGCT GCGGCGGCGGCGGTGGCCGGGAAGAAGGACGTCGCCGCCGCCGCCGATGGCTCTGCGGGGCAGAAGAAGGCGGCTGCGGGCGGCGGGATGTTTGGGTTCATGAAGAAGAAGGTGCACCCCAGAGCGGCGGAGACGGCGCCGGCGCCGGCCATGGAAACCAGTAGCGCTTGATCGATCAAGAGCTGGCCTTCTTCCTCCCCTCCTCCTGTTGATTCCGCTCTTTTGCTACTAGTTGAGC   TTCCTGGGTTTAATTATATTATTACTAGTAGTAATCTCCAGCTGGCTGTTCGATAGGATGATGAAGATTGTGTAGTGTGTTCTTTACTTGTTTCTCTTCTTTTGAA GAGGTGTGTGTAACTCACTCCATGTAAATGTTGGTTCATTTGTTGCTTTCTTTACTTGAAATGGGAGTAAAAGAAAA                         ]
[+] EMBL AU069123             [                                                                             AGTTTTTGGAGAATGGCGTCCATGATGGGAGGAGACTTCGTGGAGGCGTACGTGCTCAAGAACGCCTACAAGGAGAAGCTCAGGCGCATGGAGGCCGCGGAGGC GCTNGCGGCGGCGGCGGTGGCCGGGAAGAAGGACGTCGCCGCCGCCGCCGATGGCTCTGCGGGGCAGAAGAAGGCGGCTNCGGGCGGCGGGATGTTTGGGTTCATGAAGAAGAAGGTGCACCCCAGAGCGGCGNAGACGG                                                                                                                                                                                                                                                                                                                          ]


>consensus_7960#0 GCTAAAGCAAACCAAGAGACGAGGTATATATCTCGACGACGAGACGAAGCAAAGCAAGCA AGGTGTGATCTGATCCAAGTTTTTGGAGAATGGCGTCCATGATGGGAGGAGACTTCGTGG AGGCGTACGTGCTCAAGAACGCCTACAAGGAGAAGCTCAGGCGCATGGAGGCCGCGGAGG CGGCTGCGGCGGCGGCGGTGGCCGGGAAGAAGGACGTCGCCGCCGCCGCCGATGGCTCTG CGGGGCAGAAGAAGGCGGCTGCGGGCGGCGGGATGTTTGGGTTCATGAAGAAGAAGGTGC ACCCCAGAGCGGCGGAGACGGCGCCGGCGCCGGCCATGGAAACCAGTAGCGCTTGATCGA TCAAGAGCTGGCCTTCTTCCTCCCCTCCTCCTGTTGATTCCGCTCTTTTGCTACTAGTTG AGCTTGTTCCTGGGTTTAATTATATTATTACTAGTAGTAATCTCCAGCTGGCTGTTCGAT AGGATGATGAAGATTGTGTAGTGTGTTCTTTACTTGTTTCTCTTCTTTTGAAGAGGTGTG TGTAACTCACTCCATGTAAATGTTGGTTCATTTGTTGCTTTCTTTACTTGAAATGGGAGT AAAAGAAAAGTAATTAAGTAAAAGAGGACTCATC



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)