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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7963#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1992 fasta sequence
[TGTGCGCTCCCATCTGAACTGAAGCCTCTTGCCATCTCCCCCAGCCGAGTGAGTGATCTCTCCTCTCCATCTCTTAGCCGCCAAAGCAGAAGTCGTCGTTGTGAGGCTTACAGCTAGCTGCATGCGCTCGCGTGTGTAGAAGATAGCAGCCACCACCATCACCAGACACCAGCAAAAACAAGAGAAAAATTCCACCGGCGAAACACGGAACAAAACCGAGACGCGCGTTAGAGTCTACCAAGCTTATCTCCCCAACCCCACCCCGCCGCGCAGCCCAGCCTCTCGTTCGTTTCCACAGCTTCTCCCGTCAAACCGCGCACATCCGCCTATATATCGCGCGCGCGTGTGATCTCCCGGTTTTTGTTTGGTTTTGCTCCCCGTTCTCCCGTTGCCGTCCCACGAGGTAAAAACTAAACCAAATACATATATAAAAAAAACGCGGTGCTGCGACGAGGACAACGTAGCGGCTAGCGCCATCACTCGTGGTGTTACTGCTTTACCACTGTACTGTGTACTGTGGTGTGTGTGTGGGGGGTTGTGACTTGTGTGACGCTACCTGCGACAAGAGGACCAAGGGAGACATGGCAGTGACAGTGTTCGAGACCGCCGAGCAGCGACTGCCGTGCCACGCCGCCGCTGCCGAGCTGGGCGCCGACGGCGGGAAGAAGGTGGCGGTGGATGATGATGCGAGCGGCGGCGGGCCCGGGCAGGCCGTGCTGCTGCTGCAGGAGACCGATCACGGCGGCGACGACGACGACCGGCCGGAGAGGGACGACGTGTGGAACATGATCCAGTCGCAGAGGCCGCCGGTGGCGGCGGGGAAGCAGCAGCAGGCGGCGGCGCCGTACGTGCACCCGCTCGTGCGGAGGTCGTCGAGCC-TG-CTCAGCCAGAAGAGCCTGG-AGATTTGCACC-GAGAGCC-TCGGC-TCC-GAGACCGG---CTCCGA-CGG--CTTCTCCGACG-CCGATGGGT--CC-ACCGA-CCGCTCGTGCCCCGCGTCGGACGATGACTCCGACGGGGGCGCGGAGGAGGTGGCCGCGCGCGCCAGCCCGCCACGCGCGTTCCCGCCGCCGCTGCCGTCGCTGGCGCGGCGCACGGTGGGGGCGGTGCAGATGACGCAGGACCGCCGCGACGGCCGCCTCGTCGTCAAGGCCGTCCCCGTGCCGTCC-GCCACGCT-GTTCCGCGCGCAGCGCTGCGGCGGGCGCCTGCTCCTCTCCTTCGCCGACACCGCCGCTCCCTCCTCGGACGAGGACGACGAGAACAATGACCAAGAAGAACCCGAGCAGCAGGCCGACGAGGTCGCGCACGACGAGGAGGAGGAGGAGGACGACGAGGATGACGAGGAGGAGGTCGAGGTCGTGGACAGGGGCACCATCGTCGAGGTCAAGGTCAGCACGCAGCCGCAGGCGCGCAGCAACGGCGGCGGCAGTGTTGGGCCGCGGGTGCACCGCTCCTCGCTCGTCATCAACAAGTTCGTCAACGCCGAGCCGGCCATCGCCGCCTCCGACATCAGCGACACCGCCGCCACCGCACCCAATCCCCCGAGACGCCCGACCGGGTCCACCACCACGGCGGCCGCAGCTCTCGTCGCAGCCTCATCTCTGAGCGCGACCTCGGCTCCGTCGGGCAGTGACAACCCCGGCGGCGAGAGCAAGCTGCTGATGACGACCTGCCGGCGCCGGCGGAGCAAGGAGGAGCTCATGAACCACATGCGCCGATGCGGGCAGCTCAGCGGCAAGCTCTTCATATGGGAGCCACGCATCGCCACCTCCTCCTGAGCCGACGAGCCTCGCCGCCGCCTCCTCTGCTCGCTTGTGCCACGAGTGCTCTGCTCTGCTCTGTTTGTTCGTAGCCGTTGTAACGTAAACGTGCGTAATATTTGTGTTAGTAGCAAGGTGATCGCCACGTGATTGGCTTAGCCCTCTTGTCTGTGTCTCCTTCCGTGAGTGAGAGGGAGGGAGCTAGATTTGCTTTCGTTTATCTCCATCCGTCCCCGTGTCTCGT]
[+] EMBL AK121181 [TGTGCGCTCCCATCTGAACTGAAGCCTCTTGCCATCTCCCCCAGCCGAGTGAGTGATCTCTCCTCTCCATCTCTTAGCCGCCAAAGCAGAAGTCGTCGTTGTGAGGCTTACAGCTAGCTGCATGCGCTCGCGTGTGTAGAAGATAGCAGCCACCACCATCACCAGACACCAGCAAAAACAAGAGAAAAATTCCACCGGCGAAACACGGAACAAAACCGAGACGCGCGTTAGAGTCTACCAAGCTTATCTCCCCAACCCCACCCCGCCGCGCAGCCCAGCCTCTCGTTCGTTTCCACAGCTTCTCCCGTCAAACCGCGCACATCCGCCTATATATCGCGCGCGCGTGTGATCTCCCGGTTTTTGTTTGGTTTTGCTCCCCGTTCTCCCGTTGCCGTCCCACGAGGTAAAAACTAAACCAAATACATATATAAAAAAAACGCGGTGCTGCGACGAGGACAACGTAGCGGCTAGCGCCATCACTCGTGGTGTTACTGCTTTACCACTGTACTGTGTACTGTGGTGTGTGTGTGGGGGGTTGTGACTTGTGTGACGCTACCTGCGACAAGAGGACCAAGGGAGACATGGCAGTGACAGTGTTCGAGACCGCCGAGCAGCGACTGCCGTGCCACGCCGCCGCTGCCGAGCTGGGCGCCGACGGCGGGAAGAAGGTGGCGGTGGATGATGATGCGAGCGGCGGCGGGCCCGGGCAGGCCGTGCTGCTGCTGCAGGAGACCGATCACGGCGGCGACGACGACGACCGGCCGGAGAGGGACGACGTGTGGAACATGATCCAGTCGCAGAGGCCGCCGGTGGCGGCGGGGAAGCAGCAGCAGGCGGCGGCGCCGTACGTGCACCCGCTCGTGCGGAGGTCGTCGAGCC TG CTCAGCCAGAAGAGCCTGG AGATTTGCACC GAGAGCC TCGGC TCC GAGACCGG CTCCGA CGG CTTCTCCGACG CCGATGGGT CC ACCGA CCGCTCGTGCCCCGCGTCGGACGATGACTCCGACGGGGGCGCGGAGGAGGTGGCCGCGCGCGCCAGCCCGCCACGCGCGTTCCCGCCGCCGCTGCCGTCGCTGGCGCGGCGCACGGTGGGGGCGGTGCAGATGACGCAGGACCGCCGCGACGGCCGCCTCGTCGTCAAGGCCGTCCCCGTGCCGTCC GCCACGCT GTTCCGCGCGCAGCGCTGCGGCGGGCGCCTGCTCCTCTCCTTCGCCGACACCGCCGCTCCCTCCTCGGACGAGGACGACGAGAACAATGACCAAGAAGAACCCGAGCAGCAGGCCGACGAGGTCGCGCACGACGAGGAGGAGGAGGAGGACGACGAGGATGACGAGGAGGAGGTCGAGGTCGTGGACAGGGGCACCATCGTCGAGGTCAAGGTCAGCACGCAGCCGCAGGCGCGCAGCAACGGCGGCGGCAGTGTTGGGCCGCGGGTGCACCGCTCCTCGCTCGTCATCAACAAGTTCGTCAACGCCGAGCCGGCCATCGCCGCCTCCGACATCAGCGACACCGCCGCCACCGCACCCAATCCCCCGAGACGCCCGACCGGGTCCACCACCACGGCGGCCGCAGCTCTCGTCGCAGCCTCATCTCTGAGCGCGACCTCGGCTCCGTCGGGCAGTGACAACCCCGGCGGCGAGAGCAAGCTGCTGATGACGACCTGCCGGCGCCGGCGGAGCAAGGAGGAGCTCATGAACCACATGCGCCGATGCGGGCAGCTCAGCGGCAAGCTCTTCATATGGGAGCCACGCATCGCCACCTCCTCCTGAGCCGACGAGCCTCGCCGCCGCCTCCTCTGCTCGCTTGTGCCACGAGTGCTCTGCTCTGCTCTGTTTGTTCGTAGCCGTTGTAACGTAAACGTGCGTAATATTTGTGTTAGTAGCAAGGTGATCGCCACGTGATT ]
[+] EMBL AK060717 [ CGAGCGGCGGCGGGCCCGGGCAGGCCGTGCTGCTGCTGCAGGAGACCGATCACGGCGGCGACGACGACGACCGGCCGGAGAGGGACGACGTGTGGAACATGATCCAGTCGCAGAGGCCGCCGGTGGCGGCGGGGAAGCAGCAGCAGGCGGCGGCGCCGTACGTGCACCCGCTCGTGCGGAGGTCGTCGAGCC TG CTCAGCCAGAAGAGCCTGG AGATTTGCACC GAGAGCC TCGGC TCC GAGACCGG CTCCGA CGG CTTCTCCGACG CCGATGGGT CC ACCGA CCGCTCGTGCCCCGCGTCGGACGATGACTCCGACGGGGGCGCGGAGGAGGTGGCCGCGCGCGCCAGCCCGCCACGCGCGTTCCCGCCGCCGCTGCCGTCGCTGGCGCGGCGCACGGTGGGGGCGGTGCAGATGACGCAGGACCGCCGCGACGGCCGCCTCGTCGTCAAGGCCGTCCCCGTGCCGTCC GCCACGCT GTTCCGCGCGCAGCGCTGCGGCGGGCGCCTGCTCCTCTCCTTCGCCGACACCGCCGCTCCCTCCTCGGACGAGGACGACGAGAACAATGACCAAGAAGAACCCGAGCAGCAGGCCGACGAGGTCGCGCACGACGAGGAGGAGGAGGAGGACGACGAGGATGACGAGGAGGAGGTCGAGGTCGTGGACAGGGGCACCATCGTCGAGGTCAAGGTCAGCACGCAGCCGCAGGCGCGCAGCAACGGCGGCGGCAGTGTTGGGCCGCGGGTGCACCGCTCCTCGCTCGTCATCAACAAGTTCGTCAACGCCGAGCCGGCCATCGCCGCCTCCGACATCAGCGACACCGCCGCCACCGCACCCAATCCCCCGAGACGCCCGACCGGGTCCACCACCACGGCGGCCGCAGCTCTCGTCGCAGCCTCATCTCTGAGCGCGACCTCGGCTCCGTCGGGCAGTGACAACCCCGGCGGCGAGAGCAAGCTGCTGATGACGACCTGCCGGCGCCGGCGGAGCAAGGAGGAGCTCATGAACCACATGCGCCGATGCGGGCAGCTCAGCGGCAAGCTCTTCATATGGGAGCCACGCATCGCCACCTCCTCCTGAGCCGACGAGCCTCGCCGCCGCCTCCTCTGCTCGCTTGTGCCACGAGTGCTCTGCTCTGCTCTGTTTGTTCGTAGCCGTTGTAACGTAAACGTGCGTAATATTTGTGTTAGTAGCAAGGTGATCGCCACGTGATTGGCTTAGCCCTCTTGTCTGTGTCTCCTTCCGTGAGTGAGAGGGAGGGAGCTAGATTTGCTTTCGTTTATCTCCATCCGTCCCCGTGTCTCGT]
[+] EMBL BI806532 [ tTCGAACCTTGTTTCAACCA AANACCTTGGAAAATTTGCACCGGAGAACCTTCGGCTTCCNGAGACCGGGGTTTCCGACCGGNTTTTTTCCGACGCCCGATGGGTTCCCAACCGACCCGCTCGTGCCCCGCGTCGGACGATGACTCCGACGGGGGCGCGGAGGA GT GCCGCGCGCGCCAGCCCGCCACGCGCGTTCCCGCCGCCGCTGCCGTCGCTGGCGCGGCGCACGGTGGGGGCGGTGCAGATGACGCAGGACCGCCGCGACGGCCGCCTCGTCGTCAAGGCCGTCCCCGTGCCGTCC GCCACGCT GTTCCGCGCGCAGCGCTGCGGCGGGCGCCTGCTCCTCTCCTTCGCCGACACCGCCGCTCCCTCCTCGGACGAGGACGACGAGAACAATGACCAAGAAGAACCCGAGCAGCAGGCCGACGAGGTCGCGCACGACGAGGAGGAGGAGGAGGACGACGAGGATGACGAGGAGGAGGTCGAGGTCGTGGACAGGGGCACCATCGTCGAGGTCAAGGTCAGCACGCAGCCGCAGGCGCGCAGCAACGGCGGCGGCAGTGTTGGGCCGCGGGTGCACCGCTCCTCGCTCGTCATCAACAAGTTCGTCAACGCCGAGCCGGCCATCGCCGCCTCCGACATCAGCGACACCGCCGCCACCGCACCCAATCCCCCGAGACGCCCGACCGGGT ]
[+] EMBL BI809726 [ GGCCGTGCAGATGACGCA GACCGCCGCGAC GCCGCCTCGTCGTCAA GCCGTCCCCGTGCCGTCCGGCCACGCTGGTTCCGCGCGCAGCGCTTC GCGGGCGCCTGCTCCTCTCCTTCGCCGACACCGCCGCTCCCTCCTCGGACGAGGACGACGAGAAC ATTACCAAGAAGAACCCGAGCAGCAGGCCGACGAGGTCGCGCACGAGGAGGAGGAGGACGACGACGACGAGGATGACGAGGAGGAGGTCGAGGTCGTGGACAGGGGCACCATCGTCGAGGTCAAGGTCAGCACGCAGCCGCAGGCGCGCAGCAACGGCGGCGGCAGTGTTGGGCCGCGGGTGCACCGCTCCTCGCTCGTCATCAACAAGTTCGTCAACGCCGAGCCGGCCATCGCCGCCTCCGACATCAGCGACACCGCCGCCACCGCACCCAATCCCCCGAGACGCCCGACCGGGT ]
consensusID : consensus_7963#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 331 fasta sequence
[TCTCGTCGCAGCCTCATCTCTGAGCGCGACCTCGGCTCCGTCGGGCAGTGACAACCCCGGCGGCGAGAGCAAGCTGCTGATGACGACCTGCCGGCGCCGGCGGANAAGGAGGAGCTCATGAACCACATGCGCCGATGCGGGCAGCTCAGCGGCAAGCTCTTCATATGGGAGCCACGCATCGCCACCNCCTCCTGAGCCGACGAGCCTCGCCGCCGCCTCCNCNGCTCGCTTGTNCCACGAGTGCTCTGCTCTGCTCTGTTTGTTCGTAGCCGTTGTAACGTAAACGTGCGTAATATTTGTGTTAGTAGCAAAAAAAAAAAAAAAAAAAATA]
[+] EMBL AU076094 [TCTCGTCGCAGCCTCATCTCTGAGCGCGACCTCGGCTCCGTCGGGCAGTGACAACCCCGGCGGCGAGAGCAAGCTGCTGATGACGACCTGCCGGCGCCGGCGGANAAGGAGGAGCTCATGAACCACATGCGCCGATGCGGGCAGCTCAGCGGCAAGCTCTTCATATGGGAGCCACGCATCGCCACCNCCTCCTGAGCCGACGAGCCTCGCCGCCGCCTCCNCNGCTCGCTTGTNCCACGAGTGCTCTGCTCTGCTCTGTTTGTTCGTAGCCGTTGTAACGTAAACGTGCGTAATATTTGTGTTAGTAGCAAAAAAAAAAAAAAAAAAAATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7963#0 TGTGCGCTCCCATCTGAACTGAAGCCTCTTGCCATCTCCCCCAGCCGAGTGAGTGATCTC 60
consensus_7963#1 ------------------------------------------------------------
consensus_7963#0 TCCTCTCCATCTCTTAGCCGCCAAAGCAGAAGTCGTCGTTGTGAGGCTTACAGCTAGCTG 120
consensus_7963#1 ------------------------------------------------------------
consensus_7963#0 CATGCGCTCGCGTGTGTAGAAGATAGCAGCCACCACCATCACCAGACACCAGCAAAAACA 180
consensus_7963#1 ------------------------------------------------------------
consensus_7963#0 AGAGAAAAATTCCACCGGCGAAACACGGAACAAAACCGAGACGCGCGTTAGAGTCTACCA 240
consensus_7963#1 ------------------------------------------------------------
consensus_7963#0 AGCTTATCTCCCCAACCCCACCCCGCCGCGCAGCCCAGCCTCTCGTTCGTTTCCACAGCT 300
consensus_7963#1 ------------------------------------------------------------
consensus_7963#0 TCTCCCGTCAAACCGCGCACATCCGCCTATATATCGCGCGCGCGTGTGATCTCCCGGTTT 360
consensus_7963#1 ------------------------------------------------------------
consensus_7963#0 TTGTTTGGTTTTGCTCCCCGTTCTCCCGTTGCCGTCCCACGAGGTAAAAACTAAACCAAA 420
consensus_7963#1 ------------------------------------------------------------
consensus_7963#0 TACATATATAAAAAAAACGCGGTGCTGCGACGAGGACAACGTAGCGGCTAGCGCCATCAC 480
consensus_7963#1 ------------------------------------------------------------
consensus_7963#0 TCGTGGTGTTACTGCTTTACCACTGTACTGTGTACTGTGGTGTGTGTGTGGGGGGTTGTG 540
consensus_7963#1 ------------------------------------------------------------
consensus_7963#0 ACTTGTGTGACGCTACCTGCGACAAGAGGACCAAGGGAGACATGGCAGTGACAGTGTTCG 600
consensus_7963#1 ------------------------------------------------------------
consensus_7963#0 AGACCGCCGAGCAGCGACTGCCGTGCCACGCCGCCGCTGCCGAGCTGGGCGCCGACGGCG 660
consensus_7963#1 ------------------------------------------------------------
consensus_7963#0 GGAAGAAGGTGGCGGTGGATGATGATGCGAGCGGCGGCGGGCCCGGGCAGGCCGTGCTGC 720
consensus_7963#1 ------------------------------------------------------------
consensus_7963#0 TGCTGCAGGAGACCGATCACGGCGGCGACGACGACGACCGGCCGGAGAGGGACGACGTGT 780
consensus_7963#1 ------------------------------------------------------------
consensus_7963#0 GGAACATGATCCAGTCGCAGAGGCCGCCGGTGGCGGCGGGGAAGCAGCAGCAGGCGGCGG 840
consensus_7963#1 ------------------------------------------------------------
consensus_7963#0 CGCCGTACGTGCACCCGCTCGTGCGGAGGTCGTCGAGCCTGCTCAGCCAGAAGAGCCTGG 900
consensus_7963#1 ------------------------------------------------------------
consensus_7963#0 AGATTTGCACCGAGAGCCTCGGCTCCGAGACCGGCTCCGACGGCTTCTCCGACGCCGATG 960
consensus_7963#1 ------------------------------------------------------------
consensus_7963#0 GGTCCACCGACCGCTCGTGCCCCGCGTCGGACGATGACTCCGACGGGGGCGCGGAGGAGG 1020
consensus_7963#1 ------------------------------------------------------------
consensus_7963#0 TGGCCGCGCGCGCCAGCCCGCCACGCGCGTTCCCGCCGCCGCTGCCGTCGCTGGCGCGGC 1080
consensus_7963#1 ------------------------------------------------------------
consensus_7963#0 GCACGGTGGGGGCGGTGCAGATGACGCAGGACCGCCGCGACGGCCGCCTCGTCGTCAAGG 1140
consensus_7963#1 ------------------------------------------------------------
consensus_7963#0 CCGTCCCCGTGCCGTCCGCCACGCTGTTCCGCGCGCAGCGCTGCGGCGGGCGCCTGCTCC 1200
consensus_7963#1 ------------------------------------------------------------
consensus_7963#0 TCTCCTTCGCCGACACCGCCGCTCCCTCCTCGGACGAGGACGACGAGAACAATGACCAAG 1260
consensus_7963#1 ------------------------------------------------------------
consensus_7963#0 AAGAACCCGAGCAGCAGGCCGACGAGGTCGCGCACGACGAGGAGGAGGAGGAGGACGACG 1320
consensus_7963#1 ------------------------------------------------------------
consensus_7963#0 AGGATGACGAGGAGGAGGTCGAGGTCGTGGACAGGGGCACCATCGTCGAGGTCAAGGTCA 1380
consensus_7963#1 ------------------------------------------------------------
consensus_7963#0 GCACGCAGCCGCAGGCGCGCAGCAACGGCGGCGGCAGTGTTGGGCCGCGGGTGCACCGCT 1440
consensus_7963#1 ------------------------------------------------------------
consensus_7963#0 CCTCGCTCGTCATCAACAAGTTCGTCAACGCCGAGCCGGCCATCGCCGCCTCCGACATCA 1500
consensus_7963#1 ------------------------------------------------------------
consensus_7963#0 GCGACACCGCCGCCACCGCACCCAATCCCCCGAGACGCCCGACCGGGTCCACCACCACGG 1560
consensus_7963#1 ------------------------------------------------------------
consensus_7963#0 CGGCCGCAGCTCTCGTCGCAGCCTCATCTCTGAGCGCGACCTCGGCTCCGTCGGGCAGTG 1620
consensus_7963#1 ----------TCTCGTCGCAGCCTCATCTCTGAGCGCGACCTCGGCTCCGTCGGGCAGTG 50
**************************************************
consensus_7963#0 ACAACCCCGGCGGCGAGAGCAAGCTGCTGATGACGACCTGCCGGCGCCGGCGGAGCAAGG 1680
consensus_7963#1 ACAACCCCGGCGGCGAGAGCAAGCTGCTGATGACGACCTGCCGGCGCCGGCGGAN-AAGG 109
****************************************************** ****
consensus_7963#0 AGGAGCTCATGAACCACATGCGCCGATGCGGGCAGCTCAGCGGCAAGCTCTTCATATGGG 1740
consensus_7963#1 AGGAGCTCATGAACCACATGCGCCGATGCGGGCAGCTCAGCGGCAAGCTCTTCATATGGG 169
************************************************************
consensus_7963#0 AGCCACGCATCGCCACCTCCTCCTGAGCCGACGAGCCTCGCCGCCGCCTCCTCTGCTCGC 1800
consensus_7963#1 AGCCACGCATCGCCACCNCCTCCTGAGCCGACGAGCCTCGCCGCCGCCTCCNCNGCTCGC 229
***************** ********************************* * ******
consensus_7963#0 TTGTGCCACGAGTGCTCTGCTCTGCTCTGTTTGTTCGTAGCCGTTGTAACGTAAACGTGC 1860
consensus_7963#1 TTGTNCCACGAGTGCTCTGCTCTGCTCTGTTTGTTCGTAGCCGTTGTAACGTAAACGTGC 289
**** *******************************************************
consensus_7963#0 GTAATATTTGTGTTAGTAGCAAGGTGATCGCCACGTGATTGGCTTAGCCCTCTTGTCTGT 1920
consensus_7963#1 GTAATATTTGTGTTAGTAGCAAAAAAAAAAAAAAAAAAAATA------------------ 331
********************** * * *
consensus_7963#0 GTCTCCTTCCGTGAGTGAGAGGGAGGGAGCTAGATTTGCTTTCGTTTATCTCCATCCGTC 1980
consensus_7963#1 ------------------------------------------------------------
consensus_7963#0 CCCGTGTCTCGT 1992
consensus_7963#1 ------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||