These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7966#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 989 fasta sequence [AGGCAGACAACACAAAAGAACAAGAAAGAGGAGTGGGTTGGCTAAAGGGTGAAGAAACCAAATAAGAAAAAGATAAAAAGGGGAAAAGGTCGCCCAGCGGCTGAAACCGNCCTGCATTGCTCCTCGCTGCTTTGGATTCGCACTTCGCAGCTTGAGACCGGGAGCAGGACGAGCGGCGGAATGGGTTCCGGNTCCGGNTCTTTCCTCAAGGTGGTGGTAAAGAACTTGGATGTTCTTGCGGGGCCTATAGTTTCACTTGCTTATCCACTATATGCATCTNTTTCGAGCGATAGAAACAAAATCTGCTGTAGATGATCAGCAATGGCTCACATACTGGGTGTTGTACTCGTTTTATCACTCTATTTTNAGCTCACTTTTTTCTNCGGTACTTGATTGGCTTCCTTTNATGGTCTTATGCTAAATTGTTTTTCAATTG-CTGGTTGGTCTTGCCCTACTTCAATGGTGCTGCACATGTCTATGAACACTTTGTGAGGCCA-ATGGTTGTCAACCA-GC-AAATAGTTAATATCTGGTACATCCCAAGAAAGGATGAGTCAGATAGACCCGATGATGTGATATCAGCTGCGCAGAGATACA-TTGAACAAAATGGATCAAGAGCGTTTGAAAGTCTGGTTAACAAGTTTAAGGCTTCAAACA-CAAGGCGCTCCATTCTGGAGGAGGTAGAGGCTGAAAGAAGAGCCAAGGCTGAACTAGAAGCAGAAGCAAGGGATGAGAATCCCTTCTTCAATCAAAATTATCGGTACTAGAAGTCAGGGTTCATAGGATCAAATTTATGCTCATGGGGTAT-GTGTTCAAACGATCATGGATTAGTGTAAATAGGTTCTAGGATTCGAGTATTCTTGCTACTCTTGTTGATGCA-GGGTTCTTGCCATGAAGTAATAAATA-CTAGTGAACTAGATTTGGCTTCTATCATATGAAAATGCTAGAATGAACAACAGCATCTGC-AGACAACTGATTTGGGAAAAAAAAAA] [+] EMBL C27438 [AGGCAGACAACACAAAAGAACAAGAAAGAGGAGTGGGTTGGCTAAAGGGTGAAGAAACCAAATAAGAAAAAGATAAAAAGGGGAAAAGGTCGCCCAGCGGCTGAAACCGNCCTGCATTGCTCCTCGCTGCTTTGGATTCGCACTTCGCAGCTTGAGACCGGGAGCAGGACGAGCGGCGGAATGGGTTCCGGNTCCGGNTCTTTCCTCAAGGTGGTGGTAAAGAACTTGGATGTTCTTGCGGGGCCTATAGTTTCACTTGCTTATCCACTATATGCATCTNTTTCGAGCGATAGAAACAAAATCTGCTGTAGATGATCAGCAATGGCTCACATACTGGGTGTTGTACTCGTTTTATCACTCTATTTTNAGCTCACTTTTTTCTNCGGTACTTGATTGGCTTCCTTTNATGGTCTTATGCTAAATTGT ] [+] EMBL AK108482 [ AAGAAACCAAATAAGAAAAAGATAAAAAGGGGAAAAGGTCGCCCAGCGGCTGAAACCGACCTGCATTGCTCCTCGCTGCTTTGGATTCGCACTTCGCAGCTTGAGACCGGGAGCAGGACGAGCGGCGGAATGGGTTCCGGATCCGGATCTTTCCTCAAGGTGGTGGTAAAGAACTTGGATGTTCTTGCGGGGCCTATAGTTTCACTTGCTTATCCACTATATGCATCT GTTCGAGCGATAGAAACAAAATCTGCTGTAGATGATCAGCAATGGCTCACATACTGGGTGTTGTACTCG TTTATCACTCTA TTTGAGCTCAC TTTTTCTCCGGTACTTGAATGGCTTCCTTT ATGGTCTTATGCTAAATTGTTTTTCAATTG CTGGTTGGTCTTGCCCTACTTCAATGGTGCTGCACATGTCTATGAACACTTTGTGAGGCCA ATGGTTGTCAACCA GC AAATAGTTAATATCTGGTACATCCCAAGAAAGGATGAGTCAGATAGACCCGATGATGTGATATCAGCTGCGCAGAGATACA TTGAACAAAATGGATCAAGAGCGTTTGAAAGTCTGGTTAACAAGTTTAAGGCTTCAAACA CAAGGCGCTCCATTCTGGAGGAGGTAGAGGCTGAAAGAAGAGCCAAGGCTGAACTAGAAGCAGAAGCAAGGGATGAGAATCCCTTCTTCAATCAAAATTATCGGTACTAGAAGTCAGGGTTCATAGGATCAAATTTATGCTCATGGGGTAT GTGTTCAAACGATCATGGATTAGTGTAAATAGGTTCTAGGATTCGAGTATTCTTGCTACTCTTGTTGATGCA GGGTTCTTGCCATGAAGTAATAAATA CTAGTGAACTAGATTTGGCTTCTATCATATGAAAATGCTAGAATGAACAACAGCATCTGC AGACAA ] [+] EMBL BI801870 [ cTATGCTAAATTGTTTTTCAATTGCCTTGTTTGTC TGCCCTACTTCAATGGT CTGCACATGTCTATGAACACTTTGTGA GCCACATGGTTGTCAACCACGCAAAATAGTTAATATCTGGTACATCCCAAGAAAGGATGAGTCAGATAGACCCGATGATGTGATATCA CTGCGCAGAGATACACTTGAAC AAATGGATCAAAAGCGTTTGAAAGTCTGGTTAACAAGTTTAAGGCTTCAAACACCAAGGCGCTCCATTCTGGAGGAGGTAGAGGCTGAAAGAAGAGCCAAGGCTGAACTAGAAGCAGAAGCAAGGGATGAGAATCCTTTCTTCAATCAAAATTATCGGTACTAGAAGTCAGGGTTCATAGGATCAAATTTATGCTCATGGGGTATCGTGTTCAAACGATCATGGATTAGTGTAAATAGGTTCAAGGATTCGAGTATTCTTGCTACTCTTGTTGATGCACGGGTTCTTGCCATGAAGTAATAAATACCTAGTGAACTAGATTTGGCTTCTATCATATGAAAATGCTAGAATGAACCACAGCATCTGCAAGACAACTGATTTGGGAAAAAAAAAA] consensusID : consensus_7966#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 836 fasta sequence [CGAGACAAGGGGGGGATTCGCACTTCGCAGCTTGAGACCGGGAGCAGAACGAGCGGCGGAATGGGTTCCGGATCCGGATCTTTCCTCAAGGTGGTGGTAAAGAACTTGGATGTTCTTGCGGGGCCTATAGTTTCACTTGCTTATCCACTATATGCATCTGTTCGAGCGATAGAAACAAAATCTGCTGTAGATGATCAGCAATGGCTCACATACTGGGTGTTGTACTCGTTTATCACTCTATTTGAGCTCACTTTTTCTCCGGTACTTGAATGGCTTCCTTTATGGTCTTATGCTAAATTGTTTTTCAATTGCTGGTTGGTCTTGCCCTACTTCAATGGTGCTGCACATGTCTATGAACACTTTGTGAGGCCAATGGTTGTCAACCAGCAAATAGTTAATATCTGGTACATCCCAAGAAAGGATGAGTCAGATAGACCCGATGATGTGATATCAGCTGCGCAGAGATACATTGAACAAAATGGATCAAAAGCGTTTGAAAGTCTGGTTAACAAGTTTAAGGCTTCAAACACAAGGCGCTCCATTCTGGAGGAGGTAGAGGCTGAAAGAAGAGCCAAGGCTGAACTAGAAGCAGAAGCAAGGGATGAGAATCCTTTCTTCAATCAAAATTATCGGTACTAGAAGTCAGGGTTCATAGGATCAAATTTATGCTCATGGGGTATGTGTTCAAACGATCATGGATTAGTGTAAATAGGTTCAAGGATTCGAGTATTCCTTGCTACTCTTGGTGATGCAGGGTTCTTGNCATGAAGTAATAAATACTAGNGAACTAGATTTGGGCTTCTATCATATGNAAATGCTAGAATGAACAACAGCAT] [+] EMBL CA767402 [CGAGACAAGGGGGGGATTCGCACTTCGCAGCTTGAGACCGGGAGCAGAACGAGCGGCGGAATGGGTTCCGGATCCGGATCTTTCCTCAAGGTGGTGGTAAAGAACTTGGATGTTCTTGCGGGGCCTATAGTTTCACTTGCTTATCCACTATATGCATCTGTTCGAGCGATAGAAACAAAATCTGCTGTAGATGATCAGCAATGGCTCACATACTGGGTGTTGTACTCGTTTATCACTCTATTTGAGCTCACTTTTTCTCCGGTACTTGAATGGCTTCCTTTATGGTCTTATGCTAAATTGTTTTTCAATTGCTGGTTGGTCTTGCCCTACTTCAATGGTGCTGCACATGTCTATGAACACTTTGTGAGGCCAATGGTTGTCAACCAGCAAATAGTTAATATCTGGTACATCCCAAGAAAGGATGAGTCAGATAGACCCGATGATGTGATATCAGCTGCGCAGAGATACATTGAACAAAATGGATCAAAAGCGTTTGAAAGTCTGGTTAACAAGTTTAAGGCTTCAAACACAAGGCGCTCCATTCTGGAGGAGGTAGAGGCTGAAAGAAGAGCCAAGGCTGAACTAGAAGCAGAAGCAAGGGATGAGAATCCTTTCTTCAATCAAAATTATCGGTACTAGAAGTCAGGGTTCATAGGATCAAATTTATGCTCATGGGGTATGTGTTCAAACGATCATGGATTAGTGTAAATAGGTTCAAGGATTCGAGTATTCCTTGCTACTCTTGGTGATGCAGGGTTCTTGNCATGAAGTAATAAATACTAGNGAACTAGATTTGGGCTTCTATCATATGNAAATGCTAGAATGAACAACAGCAT] consensusID : consensus_7966#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 754 fasta sequence [CGAGACNGGGGGGNGCNGAACGAGCGGCGGAATGGGTTCCGGATNCGGATCTTTCCTCAAGGTGGNGGNAAGAACTTGGATGNTCTTGCGGGGCCTACAGTTTACTTGTTTATCCACTATATGCATCNGTTCGAGCGATAGNAACACAATCTGCTGNAGATGATCAGCAATGGCTCACATACTGTGTGGTGNACTCGTTTATCACTCTATTTGAGCTCACTTTTTNTNCGGCACTNGAATGGCTNCCTTTATGGTCTTATGCTAAATTGATTTTCAATTGCTGGTTGGTCTTGCCCTACTTCAATGGTGCTGCACATGTCTATGAACACTTTGTGAGGCCNNTGGTTGTCANCCAGCNNATAGTTAATATCTGGTACATCCCAAGAAAGGATGAGTCAGATAGACCCGATGATGTGATATCANTTGCGCAGAGATNCATTGANCAAAATGGATCAAAAGCGTTTGAAAGTCTGGNGTAACAAGTNTAAGGCCTTCAAACACANCGGCGCTCCATTCTGGANGANGNAGAGGCTGAAAGAACAGCCAAGNGCTGAACTAGAAGCAGAAGCANNGGTNTGAGAATCCTTTCTTCAATCAAAATTATNGGTACTAGAAGTNANGCTTCATAGGATCAAATTTATGCTCATGGGGTNNGTACNTAAACGATCATGGGATTACNGTAAATAGGGCCNCAAAGGATTNGAGTATTCTTGCTNCTCTTGTGATNCNGGGATCTTGCCCTGAAGTTNTAAAN] [+] EMBL CB096580 [CGAGACNGGGGGGNGCNGAACGAGCGGCGGAATGGGTTCCGGATNCGGATCTTTCCTCAAGGTGGNGGNAAGAACTTGGATGNTCTTGCGGGGCCTACAGTTTACTTGTTTATCCACTATATGCATCNGTTCGAGCGATAGNAACACAATCTGCTGNAGATGATCAGCAATGGCTCACATACTGTGTGGTGNACTCGTTTATCACTCTATTTGAGCTCACTTTTTNTNCGGCACTNGAATGGCTNCCTTTATGGTCTTATGCTAAATTGATTTTCAATTGCTGGTTGGTCTTGCCCTACTTCAATGGTGCTGCACATGTCTATGAACACTTTGTGAGGCCNNTGGTTGTCANCCAGCNNATAGTTAATATCTGGTACATCCCAAGAAAGGATGAGTCAGATAGACCCGATGATGTGATATCANTTGCGCAGAGATNCATTGANCAAAATGGATCAAAAGCGTTTGAAAGTCTGGNGTAACAAGTNTAAGGCCTTCAAACACANCGGCGCTCCATTCTGGANGANGNAGAGGCTGAAAGAACAGCCAAGNGCTGAACTAGAAGCAGAAGCANNGGTNTGAGAATCCTTTCTTCAATCAAAATTATNGGTACTAGAAGTNANGCTTCATAGGATCAAATTTATGCTCATGGGGTNNGTACNTAAACGATCATGGGATTACNGTAAATAGGGCCNCAAAGGATTNGAGTATTCTTGCTNCTCTTGTGATNCNGGGATCTTGCCCTGAAGTTNTAAAN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7966#0 AGGCAGACAACACAAAAGAACAAGAAAGAGGAGTGGGTTGGCTAAAGGGTGAAGAAACCA 60 consensus_7966#1 ------------------------------------------------------------ consensus_7966#2 ------------------------------------------------------------ consensus_7966#0 AATAAGAAAAAGATAAAAAGGGGAAAAGGTCGCCCAGCGGCTGAAACCGNCCTGCATTGC 120 consensus_7966#1 ---------------------------------------------------------CGA 3 consensus_7966#2 ------------------------------------------------------------ consensus_7966#0 TCCTCGCTGCTTTGGATTCGCACTTCGCAGCTTGAGACCGGG---AGCAGGACGAGCGGC 177 consensus_7966#1 GACAAGGGGG---GGATTCGCACTTCGCAGCTTGAGACCGGG---AGCAGAACGAGCGGC 57 consensus_7966#2 --------------------------------CGAGACNGGGGGGNGCNGAACGAGCGGC 28 ***** *** ** * ********* consensus_7966#0 GGAATGGGTTCCGGNTCCGGNTCTTTCCTCAAGGTGGTGGTAAAGAACTTGGATGTTCTT 237 consensus_7966#1 GGAATGGGTTCCGGATCCGGATCTTTCCTCAAGGTGGTGGTAAAGAACTTGGATGTTCTT 117 consensus_7966#2 GGAATGGGTTCCGGATNCGGATCTTTCCTCAAGGTGGNGGNAA-GAACTTGGATGNTCTT 87 ************** * *** **************** ** ** *********** **** consensus_7966#0 GCGGGGCCTATAGTTTCACTTGCTTATCCACTATATGCATCTNTTTCGAGCGATAGAAAC 297 consensus_7966#1 GCGGGGCCTATAGTTTCACTTGCTTATCCACTATATGCATCTGTT-CGAGCGATAGAAAC 176 consensus_7966#2 GCGGGGCCTACAGTTT-ACTTGTTTATCCACTATATGCATCNGTT-CGAGCGATAGNAAC 145 ********** ***** ***** ****************** ** ********** *** consensus_7966#0 AAAATCTGCTGTAGATGATCAGCAATGGCTCACATACTGGGTGTTGTACTCGTTTTATCA 357 consensus_7966#1 AAAATCTGCTGTAGATGATCAGCAATGGCTCACATACTGGGTGTTGTACTCGTTT-ATCA 235 consensus_7966#2 ACAATCTGCTGNAGATGATCAGCAATGGCTCACATACTGTGTGGTGNACTCGTTT-ATCA 204 * ********* *************************** *** ** ******** **** consensus_7966#0 CTCTATTTTNAGCTCACTTTTTTCTNCGGTACTTGATTGGCTTCCTTTNATGGTCTTATG 417 consensus_7966#1 CTCTATTT-GAGCTCACTTTTT-CTCCGGTACTTGAATGGCTTCCTTTA-TGGTCTTATG 292 consensus_7966#2 CTCTATTT-GAGCTCACTTTTT-NTNCGGCACTNGAATGGCTNCCTTTA-TGGTCTTATG 261 ******** ************ * *** *** ** ***** ***** ********** consensus_7966#0 CTAAATTGTTTTTCAATTGCTGGTTGGTCTTGCCCTACTTCAATGGTGCTGCACATGTCT 477 consensus_7966#1 CTAAATTGTTTTTCAATTGCTGGTTGGTCTTGCCCTACTTCAATGGTGCTGCACATGTCT 352 consensus_7966#2 CTAAATTGATTTTCAATTGCTGGTTGGTCTTGCCCTACTTCAATGGTGCTGCACATGTCT 321 ******** *************************************************** consensus_7966#0 ATGAACACTTTGTGAGGCCAATGGTTGTCAACCAGCAAATAGTTAATATCTGGTACATCC 537 consensus_7966#1 ATGAACACTTTGTGAGGCCAATGGTTGTCAACCAGCAAATAGTTAATATCTGGTACATCC 412 consensus_7966#2 ATGAACACTTTGTGAGGCCNNTGGTTGTCANCCAGCNNATAGTTAATATCTGGTACATCC 381 ******************* ********* ***** ********************** consensus_7966#0 CAAGAAAGGATGAGTCAGATAGACCCGATGATGTGATATCAGCTGCGCAGAGATACATTG 597 consensus_7966#1 CAAGAAAGGATGAGTCAGATAGACCCGATGATGTGATATCAGCTGCGCAGAGATACATTG 472 consensus_7966#2 CAAGAAAGGATGAGTCAGATAGACCCGATGATGTGATATCANTTGCGCAGAGATNCATTG 441 ***************************************** *********** ***** consensus_7966#0 AACAAAATGGATCAAGAGCGTTTGAAAGTCTGGT-TAACAAGTTTAAGGC-TTCAAACAC 655 consensus_7966#1 AACAAAATGGATCAAAAGCGTTTGAAAGTCTGGT-TAACAAGTTTAAGGC-TTCAAACAC 530 consensus_7966#2 ANCAAAATGGATCAAAAGCGTTTGAAAGTCTGGNGTAACAAGTNTAAGGCCTTCAAACAC 501 * ************* ***************** ******** ****** ********* consensus_7966#0 AA-GGCGCTCCATTCTGGAGGAGGTAGAGGCTGAAAGAAGAGCCAAGG-CTGAACTAGAA 713 consensus_7966#1 AA-GGCGCTCCATTCTGGAGGAGGTAGAGGCTGAAAGAAGAGCCAAGG-CTGAACTAGAA 588 consensus_7966#2 ANCGGCGCTCCATTCTGGANGANGNAGAGGCTGAAAGAACAGCCAAGNGCTGAACTAGAA 561 * **************** ** * ************** ******* *********** consensus_7966#0 GCAGAAGCAAGGG-ATGAGAATCCCTTCTTCAATCAAAATTATCGGTACTAGAAGTCAGG 772 consensus_7966#1 GCAGAAGCAAGGG-ATGAGAATCCTTTCTTCAATCAAAATTATCGGTACTAGAAGTCAGG 647 consensus_7966#2 GCAGAAGCANNGGTNTGAGAATCCTTTCTTCAATCAAAATTATNGGTACTAGAAGTNANG 621 ********* ** ********* ****************** ************ * * consensus_7966#0 GTTCATAGGATCAAATTTATGCTCATGGGGTATGTGTTCAAACGATCATGG-ATTAGTGT 831 consensus_7966#1 GTTCATAGGATCAAATTTATGCTCATGGGGTATGTGTTCAAACGATCATGG-ATTAGTGT 706 consensus_7966#2 CTTCATAGGATCAAATTTATGCTCATGGGGTNNGTACNTAAACGATCATGGGATTACNGT 681 ****************************** ** ************ **** ** consensus_7966#0 AAATAGGTTCT---AGGATTCGAGTATTC-TTGCTACTCTTGTTGATGCAGGGTTCTTGC 887 consensus_7966#1 AAATAGGTTCA---AGGATTCGAGTATTCCTTGCTACTCTTGGTGATGCAGGGTTCTTGN 763 consensus_7966#2 AAATAGGGCCNCAAAGGATTNGAGTATTC-TTGCTNCTCTTG-TGATNCNGGGATCTTGC 739 ******* * ****** ******** ***** ****** **** * *** ***** consensus_7966#0 CATGAAGTAATAAATACTAGTGAACTAGATTTGG-CTTCTATCATATGAAAATGCTAGAA 946 consensus_7966#1 CATGAAGTAATAAATACTAGNGAACTAGATTTGGGCTTCTATCATATGNAAATGCTAGAA 823 consensus_7966#2 CCTGAAGTTNTAAAN--------------------------------------------- 754 * ****** **** consensus_7966#0 TGAACAACAGCATCTGCAGACAACTGATTTGGGAAAAAAAAAA 989 consensus_7966#1 TGAACAACAGCAT------------------------------ 836 consensus_7966#2 ------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||